Dataset Overview
RBPRPS19
Knock-MethodshRNA
RBP FamilyRibosomal_S19e
Biosample NameHepG2
Tissue TypeLiver
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR486AIO
PlatformHiSeq
Pubmed ID32252787

RPS19 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of RPS19
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of RPS19


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr226617209AG5.06124E-05EPT1+FALSEAluSzSINE,Alu
chr116112795AG0.00106FBLIM1+FALSE
chr110517485TC0.00260.FALSEAluSx1SINE,Alu
chr579923843TC0.00363DHFR-TRUEAluSpSINE,Alu
chr1150281011AG0.00016MRPS21+TRUEAluSzSINE,Alu
chr1121134204GT0.00557SRGAP2-AS1,SRGAP2B,SRGAP2C+,-FALSE(TTTCCT)nSINE,Alu
chr12125512507AG0.00276.FALSEAluYSINE,Alu
chr11118888992CG0.00222RPS25-FALSE
chr1183155546GA0.00103LAMC2+FALSE
chr541917695CT0.00019C5orf51+FALSE
chr175377119AT0.00043DERL2-FALSEFLAM_CSINE,Alu
chr1203277243GT1.60795E-05BTG2+FALSE
chr13730400TC0.00584CEP104-TRUEAluSx3SINE,Alu
chr167874696TC0.00420SERBP1-TRUEAluSx3SINE,Alu
chr2043706946AG0.00434STK4+TRUEAluSx4SINE,Alu
chr237506939AG0.00119PRKD3-FALSE
chr4177252238AG3.85736E-09SPCS3+TRUE
chr1762109CT0.00026LINC00115-FALSE
chr45743512TC0.00045EVC+FALSE
chr1619513719TA0.00730GDE1-FALSEAluJrSINE,Alu
chr286252136TC0.00015POLR1A-TRUEAluSq2SINE,Alu
chr110517672TC0.00070.FALSEAluSx1SINE,Alu
chr2208620129AG0.00061CCNYL1+TRUEEutTc1-N1SINE,Alu
chr11593828GC0.00348CDK11B,SLC35E2B-FALSE
chr9125609939AT0.00693.FALSE
chr1352602919AC0.00117ALG11,UTP14C+FALSE
chr653363497AG0.00106GCLC-FALSE
chr4177252327AG3.52508E-05SPCS3+TRUE
chr119653870TC0.00477PQLC2+FALSE
chr13110407579TG0.00751IRS2-FALSE(T)nSINE,Alu
chr311596302TC0.00110ATG7+FALSE
chr3197612370AG0.00157.FALSEAluSpSINE,Alu
chr1156692054AT0.00471ISG20L2-FALSEAluYSINE,Alu
chrX123047170AG0.00855XIAP+FALSEAluSxSINE,Alu
chr345722491AG0.00734LIMD1,LIMD1-AS1+,-FALSEAluSzSINE,Alu
chr19325676CT9.85088E-06H6PD+FALSE
chr187012123AG0.00065LAMA1-FALSE
chr634231301GC0.00772.FALSE
chr5149823795AT0.00722RPS14-FALSE
chr483406544CT0.00328TMEM150C-FALSE
chr116889596TC0.00905NBPF1-TRUE
chr116933631GA0.00442NBPF1-FALSEGA-richSINE,Alu
chr2224622277TC0.00138AP1S3-TRUEAluSx1SINE,Alu
chr842043493GA0.00045PLAT-FALSEMLT2C1SINE,Alu
chr189237556CT0.00840PKN2+FALSE
chr577655392TC0.00080SCAMP1-AS1-TRUEAluSx4SINE,Alu
chr11152310CT0.00133SDF4-FALSE
chr5180682610TC0.00014CTC-338M12.4+FALSE
chr2114513901CT0.00655SLC35F5-FALSE
chr1153533586TC0.00358S100A2-FALSECharlie18aSINE,Alu
chr1143189486AG0.00122LOC102723769-FALSE
chr1119683390GA0.00283LOC101929147+FALSE
chr1156613632GA0.00187BCAN+FALSE
chr5178224547AG0.00064AACSP1-FALSE
chr1150704486TC0.00947CTSS-TRUEAluJoSINE,Alu
chr199761591TC0.00516ZNF562-TRUEAluSpSINE,Alu
chr4184238324GA0.00870WWC2+FALSE
chr2206987731TC0.00731.FALSEAluJbSINE,Alu
chr1583659319AT0.00130FAM103A1,C15orf40+,-FALSE
chr2128601464TC0.00161.FALSEAluJrSINE,Alu
chr19330479CT0.00027H6PD+FALSE
chr194930345GA0.00223ABCD3+FALSE
chr1541597437TA0.00217.FALSEAluSz6SINE,Alu
chr1954627915CT0.00015PRPF31+FALSE
chr11118620064AG0.00192DDX6-FALSE(A)nSINE,Alu
chr2112874290AT0.00455TMEM87B+FALSE
chr1226171400TC0.00359SDE2-TRUEBC200SINE,Alu
chr159004766GT0.00213OMA1-FALSE
chr119542250TC0.00859LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr744917351TC0.00338PURB-TRUEAluSzSINE,Alu
chr439552070TC0.00068UGDH-AS1,SMIM14+,-FALSEAluSxSINE,Alu
chr272403405AC0.00227EXOC6B-FALSEGA-richSINE,Alu
chr1569874CT0.00072.FALSE
chr1109474776AG0.00149GPSM2,CLCC1+,-FALSEAluSzSINE,Alu
chr178414329GA0.00785FUBP1-FALSEA-richSINE,Alu
chr47761286TC8.48634E-10AFAP1,AFAP1-AS1+,-FALSE
chr35258985TC1.48069E-09EDEM1+FALSE
chr11686040GT0.00543NADK-FALSE
chr2220416942GC0.00100OBSL1-FALSE
chr1590819619AG5.14004E-06.FALSEAluSxSINE,Alu
chr1115249239GA1.76451E-06NRAS-FALSE
chr589820984TC0.00921LYSMD3-FALSE
chr117345245CT0.00701SDHB-FALSE
chr2113334178AT0.00654POLR1B+FALSEL1MA10SINE,Alu
chr117298138AT0.00465CROCC+FALSE
chr135648842GA0.00015SFPQ-FALSEAluSx3SINE,Alu
chr1179044212AG7.62870E-06FAM20B+TRUEAluSxSINE,Alu
chr9125609943AG0.00247.FALSE
chr642857067AG0.00310RPL7L1+TRUEAluSpSINE,Alu
chr190496244CT0.00595ZNF326+FALSEAluJrSINE,Alu
chr111298093CT7.93954E-12MTOR-FALSE
chr679595097AG0.00712IRAK1BP1+FALSE
chr856985608AT0.00077RPS20-FALSE
chr1774561213AG0.00241SNHG16+FALSE
chr4106767318AG1.71247E-06GSTCD+TRUEAluJbSINE,Alu
chr1145281633CA0.00059NBPF20,NOTCH2NL+FALSE
chr237328097TC3.71887E-07.FALSE
chr1165877666TC0.00189UCK2+FALSE(T)nSINE,Alu
chr135648714AT0.00841SFPQ-FALSE
chr2242384368GA0.00096FARP2+FALSEAluJrSINE,Alu
chr1681064560AG0.00014CENPN+TRUEAluSgSINE,Alu
chr11769883TC0.00631PDDC1-TRUEAluYSINE,Alu
chr2128601556TC3.22117E-06.FALSEAluJrSINE,Alu
chr126161129AC0.00607AUNIP-FALSE
chr11417974CT0.00677ATAD3B+FALSE
chr131905886CA0.00226SERINC2+FALSE
chr410076658TC6.66134E-16WDR1-FALSE
chr227838058CA0.00063ZNF512+FALSE
chr128836900AG0.00311SNHG3,RCC1+TRUEAluScSINE,Alu
chr165330637CT0.00251JAK1-FALSE
chr123636016TG0.00796HNRNPR-FALSE
chr1674698535TC0.00607RFWD3-TRUEAluSx3SINE,Alu
chr417804279GA0.00606DCAF16-FALSE(A)nSINE,Alu
chr7100860467CG0.00267PLOD3-FALSE
chr333909611CT0.00598PDCD6IP+FALSE
chr9128001436CT0.00052HSPA5-FALSE
chr344791536TC4.11776E-05KIAA1143-TRUEAluJrSINE,Alu
chr123636277AT0.00632HNRNPR-FALSE
chr116919961CT0.00133NBPF1-FALSE
chr3196079691TC0.00507.FALSEAluScSINE,Alu
chr7129963777TG0.00874CPA4+FALSE(TG)nSINE,Alu
chr119543352TC0.00279LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr399517483CT0.00070MIR548G-FALSE(TG)nSINE,Alu
chr2151326173AC0.00143RND3-FALSE
chr643738977CT0.00088VEGFA+FALSE
chr19161011TC3.85416E-05.FALSEAluJbSINE,Alu
chr1145511968AG0.00411NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr1109746745AG0.00073KIAA1324+TRUEAluJbSINE,Alu
chr345722253AG0.00670LIMD1,LIMD1-AS1+,-FALSEAluSzSINE,Alu
chr136067752TC9.44020E-05PSMB2-TRUEAluSzSINE,Alu
chr3179506721GC0.00018USP13+FALSE
chr126606589CG0.00420SH3BGRL3+FALSE
chr1118166096CT0.00861FAM46C+FALSE
chr272968439TC0.00148EXOC6B-FALSE
chr1545366812AG0.00446SORD+FALSE
chr2217498311TC0.00977IGFBP2+FALSE(CCG)nSINE,Alu
chr1490509564CT0.00552TDP1+FALSE
chr1269237057AG0.00259MDM2+TRUE
chr127992825GA0.00192IFI6-FALSE
chr1114306372AG0.00243RSBN1-FALSE
chr127205224TC0.00353.FALSEAluScSINE,Alu
chr1100550370TA0.00731SASS6-FALSE
chr1148023637CT0.00014NBPF8-FALSE
chr1256215097AT0.00051DNAJC14-FALSE
chr1226333556CA0.00250ACBD3-FALSE(CAAAA)nSINE,Alu
chr473957426GT0.00434ANKRD17-FALSE
chr133148196AG0.00303SYNC,RBBP4+,-FALSEAluSgSINE,Alu
chr121602602AG8.31525E-05ERC1+FALSEAluSxSINE,Alu
chr2217366919AG0.00197.FALSEAluSz6SINE,Alu
chr674134869TC0.00024MB21D1-TRUEAluSzSINE,Alu
chr1101541172AG6.48917E-05LOC102606465+TRUEMLT1KSINE,Alu
chr352028445CT0.00934RPL29-FALSE
chr1227574427AG7.32829E-06ARNTL2,ARNTL2-AS1+,-FALSEAluSzSINE,Alu
chr261277776AG0.00178PEX13+TRUEAluYSINE,Alu
chr116918734GC0.00600NBPF1-FALSE
chr616305357CT0.00559ATXN1-FALSE
chr1150281090AG3.10555E-05MRPS21+TRUEAluSzSINE,Alu
chr417803616TC0.00046DCAF16-TRUEAluYSINE,Alu
chr2217366821AG0.00510.FALSEAluSz6SINE,Alu
chr1114438951AG0.00012AP4B1-AS1,AP4B1+,-FALSE
chr861693942GA0.00350CHD7+FALSE
chr2172178588TC0.00248METTL8-TRUEAluSx3SINE,Alu
chr110520649TC0.00629DFFA-TRUEAluSc8SINE,Alu
chr147746678GC0.00374STIL-FALSE
chr626095642AG0.00332.FALSEAluYSINE,Alu
chr568858545CG0.00034GTF2H2C,GTF2H2C_2+FALSEAluSzSINE,Alu
chr8145159713GC0.00137MAF1+FALSE
chr1182353198AT0.00473GLUL-FALSE
chr1146650363TA0.00982PDIA3P1+FALSE
chr717384395AG0.00856AHR+TRUEAluSxSINE,Alu
chrX9863112AG0.00498SHROOM2+FALSE
chr11255412CA0.00751CPSF3L-FALSE(GCAGG)nSINE,Alu
chr136068184TC0.00150PSMB2-TRUEAluScSINE,Alu
chr2202030311TA0.00732CFLAR+FALSESVA_ASINE,Alu
chr128859264TG0.00030RCC1+FALSE
chr299813003AG2.46688E-05MRPL30+TRUEAluJbSINE,Alu
chr119586458AG1.61978E-09MRTO4+TRUEAluSzSINE,Alu
chr720178434TC0.00178MACC1,LOC101927668-TRUEAluYSINE,Alu
chr7131188652GC0.00684PODXL-FALSEMIR3SINE,Alu
chr5118175182TC0.00205DTWD2-TRUEAluJrSINE,Alu
chr2180810264AT1.24157E-05CWC22-FALSE
chr347628808AT0.00792SMARCC1-FALSE
chr3196557357GT0.00615PAK2+FALSE
chr1788795TG0.00333LINC01128+FALSECharlie19aSINE,Alu
chr1155106227AT0.00214EFNA1+FALSE
chr2110373919GA0.00669SOWAHC+FALSE
chr11252468TC0.00182CPSF3L-TRUEAluJrSINE,Alu
chr3105294534AG1.10929E-06ALCAM+FALSE
chr116918502AG0.00098NBPF1-FALSE
chr1675479474TC2.06057E-06TMEM170A-TRUEAluJbSINE,Alu
chr138280010CT0.00393MTF1-FALSE
chr153289790CT0.00281ZYG11B+FALSEAluSzSINE,Alu
chr239010088AG0.00192.FALSEAluSpSINE,Alu
chr126138325GA0.00027SEPN1+FALSE
chr133149373AG0.00264SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr346007823GT6.71801E-06FYCO1-FALSE
chr1169101273TG0.00522ATP1B1+FALSE(T)nSINE,Alu
chr144447004GA0.00768B4GALT2+FALSE(CAG)nSINE,Alu
chr2105881071CA0.00851TGFBRAP1-FALSE
chr1145689611CA0.00104NBPF20,NBPF10+FALSEAluSgSINE,Alu
chr362189465CT2.69664E-05PTPRG+FALSE
chr224223142AG0.00524UBXN2A+TRUEAluScSINE,Alu
chr1143399181TG0.00832.FALSE
chr128920925AG0.00294RAB42+TRUEAluSxSINE,Alu
chr811700231TC1.53992E-05CTSB-TRUEAluSq2SINE,Alu
chr310193511AG0.00116VHL+TRUEAluJrSINE,Alu
chr3196558328AG1.33227E-14PAK2+FALSE
chr119543457TC0.00101LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr2176789423CA0.00441LNPK-FALSEMSTB1SINE,Alu
chr116946266GC0.00750CROCCP2-FALSEMIRbSINE,Alu
chr154692358GA0.00195SSBP3-FALSE
chr1160966352TC3.14235E-07F11R-TRUEAluSgSINE,Alu
chr210270757AT0.00382RRM2+FALSE
chr273339708GA0.00991RAB11FIP5-FALSE
chr126887592TC0.00354RPS6KA1+FALSE
chr1117532790CT0.00981PTGFRN+FALSE
chr1168522907TC0.00828CPT1A-TRUEAluYSINE,Alu
chr1193054485TC0.00439TROVE2+FALSE
chr748146025AG0.00106UPP1+TRUEAluSqSINE,Alu
chr11650807TC0.00104CDK11B,CDK11A-FALSE
chr1477787088CT0.00076POMT2-FALSE
chr744918772TC0.00026PURB-FALSEAluSgSINE,Alu
chr1145513113AG0.00505NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr8146200325TC0.00599ZNF252P-TRUEAluScSINE,Alu
chr417628548AG0.00991.FALSEAluSzSINE,Alu
chr140539208AT2.90582E-07PPT1-FALSE
chr1180247483TC0.00167.FALSE
chr1168218671AG0.00974.FALSEAluSzSINE,Alu
chr349067809TA0.00022QRICH1-FALSE
chr1745195951TC0.00011CDC27-TRUEMADE1SINE,Alu
chr174930749AG0.00025KIF1C+TRUEFLAM_ASINE,Alu
chr4120378207AG8.04303E-06LOC645513+FALSE
chr127204516TC0.00028.FALSEAluSg7SINE,Alu
chr126143727AT0.00917SEPN1+FALSEAluSxSINE,Alu
chr136068231TC0.00508PSMB2-TRUEAluScSINE,Alu
chr812879062TC0.00035KIAA1456+FALSE
chr118808465TA0.00957KLHDC7A+FALSE
chr145975574AG0.00613MMACHC+TRUEAluSx4SINE,Alu
chr159122059GA0.00476MYSM1-FALSE
chr11595540TC0.00830CDK11B,SLC35E2B-TRUEAluJrSINE,Alu
chr140537941AC0.00627CAP1+FALSE(A)nSINE,Alu
chr146075663AG0.00240NASP+TRUEAluSx4SINE,Alu
chr123636275GT0.00185HNRNPR-FALSE
chr1958375157AG0.00408ZNF587+TRUEAluSx4SINE,Alu
chr1610623666TC1.68352E-07EMP2-TRUEAluSpSINE,Alu
chr237328034TC0.00035.FALSE
chr534906661TC9.12853E-06RAD1-TRUEAluJoSINE,Alu
chr2035521049GA0.00711TLDC2,SAMHD1+,-FALSE
chr119984100GC0.00037MINOS1-NBL1,NBL1+FALSE
chr3184766301TC0.00648VPS8+FALSE
chr1148556784GA0.00543.FALSE
chr7137612915GA0.00057CREB3L2-FALSE
chr133145958GT0.00080SYNC,RBBP4+,-FALSE(T)nSINE,Alu
chr1225678219TC0.00080ENAH-TRUEAluSxSINE,Alu
chr3122283294GC0.00066DTX3L,PARP9+,-FALSE
chr13703611AC0.00208LRRC47-FALSE
chr121102501GA0.00148HP1BP3-FALSE
chr1114306372AG0.00443RSBN1-FALSE
chr5115166350TC0.00148ATG12-TRUEAluJrSINE,Alu
chr3183209065TC0.00576KLHL6-TRUEAluSqSINE,Alu
chr11252443TC8.33820E-06CPSF3L-TRUEAluJrSINE,Alu
chr119542679TC0.00584LOC101927895,EMC1+,-FALSEFRAMSINE,Alu
chr1145375858TC0.00069NBPF20,NBPF10+FALSE
chr125812110TC0.00639TMEM57+FALSE
chr167874859TC1.49998E-05SERBP1-TRUEAluSxSINE,Alu
chr314986138TC1.80576E-11FGD5-AS1-TRUEFLAM_CSINE,Alu
chr1569991TG0.00980.FALSE
chr1543698008CT0.00175TUBGCP4+FALSEAluSpSINE,Alu
chr1610625320TC0.00923EMP2-TRUEAluSxSINE,Alu
chr1200375846GT0.00040ZNF281-FALSE(T)nSINE,Alu
chr237330476TC2.74271E-05.FALSEAluSq2SINE,Alu
chr136924851TC0.00493MRPS15-TRUEAluJbSINE,Alu
chr631601344TC0.00569.FALSE
chr116889502TC0.00516NBPF1-TRUEL1MC4SINE,Alu
chr642855954AG0.00190RPL7L1+TRUEAluSzSINE,Alu
chr2109401281TG0.00116RANBP2+FALSE
chr1077807027TC0.00089C10orf11+FALSE
chr261416406TG0.00010USP34-FALSEAluSc8SINE,Alu
chr1109818161CT0.00840CELSR2+FALSE
chr110519064TC0.00515.FALSEAluSx3SINE,Alu
chr340578843AG0.00749ZNF621+TRUEAluJrSINE,Alu
chr187328400CT0.00755SEP15-FALSE
chr19328120AG0.00128H6PD+TRUEAluJrSINE,Alu
chr132697110AT5.19592E-06EIF3I+FALSEAluSpSINE,Alu
chr1113212984CT7.79033E-05CAPZA1+FALSE(T)nSINE,Alu
chr1153909069GC5.11201E-05DENND4B-FALSE
chr137949806GA2.03247E-05ZC3H12A+FALSE
chr3194789663TC0.00754XXYLT1-FALSEMARNASINE,Alu
chr140306898TC9.21891E-07TRIT1-FALSE
chr2100899665GA0.00758LONRF2-FALSE
chr131732892GA0.00408SNRNP40-FALSE
chr1982994TC0.00432AGRN+FALSE
chr2201774341TC0.00010.FALSEAluSzSINE,Alu
chr10102315864TA0.00290.FALSE
chr182804129GA0.00157SMCHD1+FALSE
chr1376378459TC0.00239LMO7+FALSE
chr110520067TC2.08449E-05.FALSEAluSxSINE,Alu

Differential Expression Gene Analysis