RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	201350983	C	T	0.00768	LAD1	-	FALSE
chr1	1683565	G	A	7.19943E-05	NADK	-	FALSE
chr1	93297590	C	A	0.00325		.	FALSE
chr2	37331560	T	C	0.00040		.	FALSE	AluJb	SINE,Alu
chr1	115110683	A	C	0.00168	BCAS2	-	FALSE
chr5	130538076	A	G	0.00045	LYRM7	+	TRUE	AluSp	SINE,Alu
chr1	24999101	G	T	0.00100	SRRM1	+	FALSE
chr1	26856462	T	G	0.00201	RPS6KA1	+	FALSE
chr5	122359494	G	C	0.00043	PPIC	-	FALSE
chr8	56985612	G	T	0.00028	RPS20	-	FALSE
chr3	52288945	T	C	3.51556E-07	WDR82	-	FALSE
chr2	11323078	C	T	0.00539	ROCK2	-	FALSE
chr1	247319705	T	G	6.58458E-05	ZNF124	-	FALSE
chr1	26608017	T	A	3.67009E-06		.	FALSE
chr16	10623558	T	C	0.00103	EMP2	-	TRUE	AluSp	SINE,Alu
chr16	23682631	C	T	0.00960	DCTN5	+	FALSE
chr1	9740894	C	T	0.00097	PIK3CD,PIK3CD-AS2	+,-	FALSE	MLT1F1	SINE,Alu
chr1	36067925	T	C	1.81623E-06	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	9324670	A	G	0.00734	H6PD	+	FALSE
chr5	56177851	A	T	0.00796	MAP3K1	+	FALSE	(CAA)n	SINE,Alu
chr6	42857111	A	G	0.00021	RPL7L1	+	FALSE	AluSp	SINE,Alu
chr3	197399402	T	C	0.00840	RUBCN	-	FALSE
chr6	31324110	G	A	0.00521		.	FALSE
chr1	10520331	C	T	0.00527		.	FALSE	AluSx1	SINE,Alu
chr1	10517290	T	C	0.00366		.	FALSE	AluJr	SINE,Alu
chr1	11347155	C	T	0.00273	UBIAD1	+	FALSE
chr3	156259348	G	A	0.00899	SSR3	-	FALSE	AluSq2	SINE,Alu
chr2	127826533	A	G	0.00104	BIN1	-	FALSE
chr1	100550370	T	A	0.00308	SASS6	-	FALSE
chr11	63394016	T	C	0.00106	ATL3	-	FALSE
chr2	202032184	A	G	0.00954	CFLAR	+	FALSE	AluJo	SINE,Alu
chr1	19543352	T	C	0.00087	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr3	42599091	G	A	0.00196	SEC22C	-	FALSE
chr1	46269493	G	C	0.00233	MAST2	+	FALSE
chr1	16929100	C	T	0.00911	NBPF1	-	FALSE	LTR16B2	SINE,Alu
chr16	88789700	C	T	0.00703	PIEZO1	-	FALSE
chr1	204521616	A	G	0.00455	MDM4	+	TRUE	AluSg	SINE,Alu
chrX	123045405	A	G	0.00551	XIAP	+	TRUE	AluJo	SINE,Alu
chr1	146215189	G	C	0.00226	NBPF20,NBPF10,NBPF25P	+	FALSE
chr19	21273765	A	G	0.00253	ZNF714	+	FALSE	AluSc	SINE,Alu
chr1	19586532	A	G	0.00188	MRTO4	+	TRUE	AluSz	SINE,Alu
chr3	183889337	A	T	3.46641E-05	DVL3	+	FALSE
chr3	141667632	T	G	1.45044E-05	TFDP2	-	FALSE
chr2	99813020	A	G	0.00015	MRPL30	+	TRUE	AluJb	SINE,Alu
chr10	117823568	T	A	0.00483	GFRA1	-	FALSE	(ATC)n	SINE,Alu
chr4	120979190	T	C	0.00970		.	FALSE	AluSg4	SINE,Alu
chr2	9661424	G	C	0.00130	ADAM17	-	FALSE
chr1	148003734	T	C	0.00015	NBPF8	-	TRUE	L1MC4	SINE,Alu
chr1	138980	G	T	0.00608	LOC729737	-	FALSE
chr1	3729587	A	G	0.00580	CEP104	-	FALSE	(AT)n	SINE,Alu
chr2	24494638	T	G	0.00495	ITSN2	-	FALSE	(TATCCT)n	SINE,Alu
chr16	19715543	T	C	0.00879		.	FALSE	AluSg	SINE,Alu
chr4	2517223	A	G	2.74855E-08	RNF4	+	FALSE
chr7	75958149	A	C	0.00050	YWHAG	-	FALSE
chr1	235392546	T	C	0.00312	ARID4B	-	FALSE
chr10	60047609	A	G	0.00979	CISD1	+	FALSE	(A)n	SINE,Alu
chr1	207942482	A	G	0.00715	CD46	+	TRUE	AluSg4	SINE,Alu
chr1	19545144	G	T	0.00071	LOC101927895,EMC1	+,-	FALSE
chr1	146467146	A	G	0.00510	NBPF20,NBPF25P,NBPF12	+	TRUE	L1MC4	SINE,Alu
chr1	179876988	C	G	0.00045	TOR1AIP1	+	FALSE
chr3	50296330	G	A	0.00645	GNAI2	+	FALSE
chr1	28662105	A	G	9.98367E-05	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	118068558	G	A	0.00644		.	FALSE
chr1	10520117	T	C	0.00188		.	FALSE	AluSx	SINE,Alu
chr4	2940085	T	C	0.00801	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	27992798	C	A	0.00690	IFI6	-	FALSE	FAM	SINE,Alu
chr5	37290435	T	C	8.22232E-07		.	FALSE	AluSz	SINE,Alu
chr5	125962175	A	G	0.00020	PHAX	+	TRUE	AluSc	SINE,Alu
chr1	47905555	A	C	0.00661	FOXD2	+	FALSE
chr1	110170896	T	C	5.12229E-06	AMPD2	+	FALSE
chr1	33148045	A	G	0.00264	SYNC,RBBP4	+,-	FALSE	AluSx	SINE,Alu
chr1	47184569	G	C	0.00061	EFCAB14	-	FALSE
chr1	6314743	C	T	0.00615	GPR153	-	FALSE
chr5	40832550	C	T	7.98859E-06	RPL37	-	FALSE
chr8	146200271	T	C	0.00182	ZNF252P	-	TRUE	AluSc	SINE,Alu
chr2	204162036	A	G	0.00369	CYP20A1	+	TRUE	AluSx	SINE,Alu
chr1	95660019	G	T	0.00052	TMEM56-RWDD3,LOC101928118,TMEM56	+,-	FALSE
chr2	37331065	T	C	0.00585		.	FALSE	AluSx1	SINE,Alu
chr1	153907287	G	C	0.00159	DENND4B	-	FALSE	(CTG)n	SINE,Alu
chr1	85785557	T	A	0.00141	DDAH1	-	FALSE
chr1	222802926	C	T	0.00035	MIA3	+	FALSE
chr1	16889820	C	T	0.00012	NBPF1	-	FALSE
chr9	131570178	T	C	0.00767	TBC1D13	+	FALSE
chr2	3193040	G	A	0.00650	TSSC1	-	FALSE
chr1	52306082	A	T	0.00038	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr15	85185205	T	C	0.00459	WDR73,SCAND2P	+,-	FALSE	FLAM_C	SINE,Alu
chr1	1597423	C	T	2.12697E-10	CDK11B,SLC35E2B	-	FALSE
chr10	51026705	C	G	0.00456	PARG	-	FALSE
chr1	54636689	A	G	0.00268		.	FALSE
chr1	26608018	G	A	2.25777E-05		.	FALSE
chr10	71993094	T	G	0.00078	PPA1	-	FALSE
chr14	53243411	T	C	0.00028	GNPNAT1	-	TRUE	AluSx3	SINE,Alu
chr2	65496187	G	A	0.00103	ACTR2	+	FALSE
chr5	130536842	A	G	0.00016	LYRM7	+	TRUE	AluSx4	SINE,Alu
chr10	129216658	T	C	0.00710	DOCK1	+	FALSE
chr1	154554947	T	G	0.00511	ADAR	-	FALSE
chr1	100658578	G	A	0.00012	DBT	-	FALSE
chr1	33086754	T	C	0.00065		.	FALSE	AluY	SINE,Alu
chr2	237035915	C	G	0.00348	AGAP1	+	FALSE
chr1	93617406	A	T	0.00275	TMED5	-	FALSE
chr1	145689611	C	A	0.00142	NBPF20,NBPF10	+	FALSE	AluSg	SINE,Alu
chr21	46353985	A	G	0.00985	LINC01547	-	FALSE	MER5A	SINE,Alu
chr14	21928999	T	C	2.57107E-05	RAB2B	-	TRUE	AluSp	SINE,Alu
chr1	204526727	A	G	0.00033	MDM4	+	TRUE	AluSx	SINE,Alu
chr6	26095462	A	G	0.00113	HFE	+	TRUE	AluY	SINE,Alu
chr2	198255334	A	T	0.00551		.	FALSE
chr15	42860107	A	G	0.00194	HAUS2	+	TRUE	AluSg	SINE,Alu
chr1	184762524	T	C	0.00778	FAM129A	-	TRUE	AluSz	SINE,Alu
chr3	5258280	A	G	4.07938E-08	EDEM1	+	FALSE
chr6	17951005	G	C	0.00381	KIF13A	-	FALSE
chr4	7762313	C	G	5.86540E-10	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	55207986	T	A	0.00872	MROH7-TTC4,TTC4	+	FALSE
chr1	1650801	T	C	0.00359	CDK11B,CDK11A	-	FALSE
chr12	131356731	T	C	2.96756E-07	RAN	+	FALSE	(GGCCGG)n	SINE,Alu
chr1	6282587	T	C	0.00487	ICMT	-	TRUE
chr5	70952934	C	T	0.00315	MCCC2	+	FALSE	MIR	SINE,Alu
chr3	88191444	A	C	0.00020	CGGBP1,ZNF654	+,-	FALSE
chr4	10443060	T	G	0.00167	ZNF518B	-	FALSE
chr1	11347150	C	A	0.00380	UBIAD1	+	FALSE
chr4	177249593	T	G	0.00038	SPCS3	+	FALSE	(T)n	SINE,Alu
chr3	181430143	G	T	0.00126	SOX2-OT,SOX2	+	FALSE
chr2	1652354	G	A	0.00000	PXDN	-	FALSE
chr3	39452123	G	A	0.00093	RPSA	+	FALSE
chr1	93308166	C	T	0.00334	FAM69A	-	FALSE
chr1	19232017	T	G	0.00723	IFFO2	-	FALSE
chr6	134492482	A	C	0.00108	SGK1	-	FALSE
chr1	16919961	C	T	0.00133	NBPF1	-	FALSE
chr1	9642827	G	A	0.00521	SLC25A33	+	FALSE
chr1	154321623	G	A	0.00782	ATP8B2	+	FALSE
chr1	1593857	T	C	0.00424	CDK11B,SLC35E2B	-	FALSE
chr1	33148623	A	G	0.00221	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr3	15113656	T	C	1.73787E-06	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	24710405	A	G	0.00246	STPG1	-	FALSE
chr12	125512541	A	G	6.52088E-06		.	FALSE
chr1	9160975	T	C	0.00347		.	FALSE	AluJb	SINE,Alu
chr1	6282255	T	C	0.00954	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	26143726	G	T	0.00560	SEPN1	+	FALSE	AluSx	SINE,Alu
chr4	165998654	T	C	0.00953	TMEM192	-	TRUE	AluSg	SINE,Alu
chr7	30616247	T	C	0.00887	LOC401320	-	FALSE	THE1B	SINE,Alu
chr7	6501831	T	A	0.00110	KDELR2	-	FALSE
chr1	89648082	G	A	0.00074	GBP4	-	FALSE	LTR2B	SINE,Alu
chr1	19071752	T	C	0.00503	PAX7	+	FALSE
chr1	145293566	G	A	0.00103	NBPF20,NBPF10	+	FALSE
chr1	145290874	C	T	0.00380	NBPF20	+	FALSE
chr9	130209956	A	T	0.00221	RPL12	-	FALSE
chr9	128729384	G	C	0.00059	PBX3	+	FALSE
chr1	36067760	T	C	0.00213	PSMB2	-	TRUE	AluSz	SINE,Alu
chr5	134086670	C	A	0.00585	CAMLG	+	FALSE
chr1	26449327	A	G	0.00330	PDIK1L	+	FALSE
chr1	156692054	A	T	0.00471	ISG20L2	-	FALSE	AluY	SINE,Alu
chr1	145689798	A	G	0.00200	NBPF20,NBPF10	+	TRUE	AluJb	SINE,Alu
chr15	33064742	C	G	0.00215	FMN1	-	FALSE
chr2	100899665	G	A	0.00758	LONRF2	-	FALSE
chr1	33148736	A	G	0.00525	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	28661718	A	G	0.00520	MED18	+	TRUE	AluSg	SINE,Alu
chr1	93297607	C	T	0.00016	RPL5	+	FALSE
chr1	145511983	A	G	0.00596	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr15	23282589	A	G	0.00291	HERC2P2	-	FALSE
chr1	220231276	T	C	0.00545	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr1	168218735	A	G	0.00924		.	FALSE	AluSz	SINE,Alu
chr1	220231959	T	C	0.00464	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr4	57326879	A	G	0.00198	PAICS	+	TRUE	AluSx1	SINE,Alu
chr1	117078729	A	G	0.00983	CD58	-	FALSE
chr1	52816674	T	C	1.79626E-07	CC2D1B	-	TRUE	AluSx1	SINE,Alu
chr1	19542310	T	C	2.12437E-06	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	53289852	A	G	0.00228	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr1	145688682	A	C	0.00468	NBPF20,NBPF10,RNF115	+	FALSE
chr1	44818526	C	G	0.00326	ERI3	-	FALSE
chr5	151041886	T	G	0.00176	SPARC	-	FALSE
chr2	74333231	C	T	0.00073	TET3	+	FALSE
chr20	25428617	A	G	0.00622	GINS1	+	FALSE	AluJb	SINE,Alu
chr2	201253956	A	G	0.00071	SPATS2L	+	FALSE
chr4	17802824	T	C	0.00594	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	1647814	T	C	7.10450E-06	CDK11B,CDK11A	-	FALSE
chr22	44890573	T	C	1.87764E-05	LDOC1L	-	FALSE
chr12	133298121	A	G	0.00026	PGAM5	+	TRUE	AluJo	SINE,Alu
chr2	29023124	G	T	0.00477	PPP1CB	+	FALSE
chr1	89447839	C	G	0.00589	KYAT3,RBMXL1	-	FALSE
chr1	21102501	G	A	0.00148	HP1BP3	-	FALSE
chr9	100777784	T	A	0.00080	ANP32B	+	FALSE
chr2	218696215	A	G	0.00915	TNS1	-	FALSE
chr1	28661656	A	G	0.00026	MED18	+	TRUE	AluSg	SINE,Alu
chr2	128620435	C	A	0.00602	AMMECR1L	-	FALSE
chr1	79115905	T	C	0.00113	IFI44	+	FALSE
chr1	162354204	C	A	0.00193	C1orf226	+	FALSE
chr17	57281058	A	G	0.00061	PRR11	+	TRUE	AluSz	SINE,Alu
chr7	35840866	A	G	0.00947	SEPT7	+	FALSE
chr4	39552175	T	C	0.00010	UGDH-AS1,SMIM14	+,-	FALSE	AluSx	SINE,Alu
chr1	46075715	A	G	0.00842	NASP	+	TRUE	AluSx4	SINE,Alu
chr4	152025793	T	A	0.00675	RPS3A	+	FALSE
chr1	169101274	T	G	0.00026	ATP1B1	+	FALSE	(T)n	SINE,Alu
chr2	61277463	A	G	0.00826	PEX13	+	TRUE	AluSx	SINE,Alu
chr19	11945632	A	G	2.87422E-05	ZNF440	+	TRUE	AluSp	SINE,Alu
chr1	110949720	C	T	0.00666	LAMTOR5	-	FALSE	L1ME4b	SINE,Alu
chr1	569782	T	C	0.00010		.	FALSE
chr5	125961810	A	G	3.92353E-06	PHAX	+	TRUE	FLAM_C	SINE,Alu
chr1	9161011	T	C	0.00190		.	FALSE	AluJb	SINE,Alu
chr5	72876776	C	A	0.00875	UTP15	+	FALSE
chr1	228880466	G	A	0.00216	RHOU	+	FALSE
chr1	7980667	T	C	0.00584	TNFRSF9	-	TRUE	AluJb	SINE,Alu
chr14	75202834	A	G	7.36085E-05	FCF1	+	TRUE	AluSx	SINE,Alu
chr2	277314	G	A	0.00867	ACP1	+	FALSE
chr12	27574433	A	G	0.00473	ARNTL2,ARNTL2-AS1	+,-	FALSE	AluSz	SINE,Alu
chr2	85133793	G	A	0.00577	TMSB10	+	FALSE
chr6	13788387	T	C	0.00240	MCUR1	-	TRUE	AluSx	SINE,Alu
chr1	145375862	T	C	0.00072	NBPF20,NBPF10	+	FALSE
chr1	16890598	T	A	0.00375	NBPF1	-	FALSE
chr16	1411036	A	G	0.00766	GNPTG	+	TRUE	AluSz	SINE,Alu
chr5	37290400	T	C	0.00085		.	FALSE	AluSz	SINE,Alu
chr5	180682611	C	A	9.20591E-05	CTC-338M12.4	+	FALSE
chr14	23441535	A	T	0.00879	AJUBA	-	FALSE	GA-rich	SINE,Alu
chr1	19543456	T	C	3.77297E-05	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	145511988	A	G	0.00900	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	175161849	G	T	0.00030	KIAA0040	-	FALSE
chr2	11323079	T	A	0.00586	ROCK2	-	FALSE	(TA)n	SINE,Alu
chr10	22824828	A	T	0.00225	PIP4K2A	-	FALSE
chr1	16889466	A	C	0.00665	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr2	50147865	T	A	0.00112	NRXN1	-	FALSE	(GT)n	SINE,Alu
chr1	6683580	C	A	0.00516	PHF13	+	FALSE
chr7	63808867	C	A	0.00556	ZNF736	+	FALSE
chr1	46078630	A	G	0.00131	NASP	+	FALSE
chrX	16781186	A	G	0.00220		.	FALSE	AluJo	SINE,Alu
chr1	206566904	T	C	0.00084	SRGAP2	+	FALSE

RBP	SNRNP200
Knock-Method	shRNA
RBP Family	DEAD
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR003LSA
Platform	HiSeq
Pubmed ID	32252787

SNRNP200 - Target Gene Network