Dataset Overview
RBP
SNRNP200
Knock-Method
shRNA
RBP Family
DEAD
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR003LSA
Platform
HiSeq
Pubmed ID
32252787
SNRNP200 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of SNRNP200
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1BG
11.1
7.71
-0.50620
0.00386
0.01454
A4GALT
0.64
1.33
1.25183
1.27302E-05
0.00011
AACS
10.62
7.19
-0.42969
0.00030
0.00174
AADAT
9.24
10.73
0.48871
0.00152
0.00671
AAK1
4.32
6.0
0.55203
0.00050
0.00268
AAMP
130.11
83.42
-0.37835
0.00459
0.01667
AAR2
9.53
7.11
-0.25718
0.04759
0.11099
AARS
74.14
40.46
-0.61464
2.10621E-07
2.94597E-06
AASDHPPT
17.76
12.18
-0.30575
0.01541
0.04479
AATF
20.53
20.93
0.34605
0.00386
0.01453
Showing 1 to 10 of 5,630 entries
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Function Analysis of Target Genes of SNRNP200
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A2M
9264904_9265123_9264754_9264807_9265955_9266139
0.00029
-0.292
DataSet_01_100
View details
AASS
121718915_121719004_121717891_121718068_121719650_121719766
0.00534
-0.183
DataSet_01_100
View details
ABI1
27044583_27044670_27040526_27040712_27047990_27048167
0.00154
-0.14
DataSet_01_100
View details
ABI2
204240779_204240855_204231599_204231767_204244930_204245000
0.00532
0.063
DataSet_01_100
View details
ACLY
40052872_40052902_40049285_40049427_40054001_40054092
0.00000
0.16
DataSet_01_100
View details
ADD1
2869698_2869856_2845671_2845751_2877622_2877837
0.00531
0.042
DataSet_01_100
View details
ADD3
111892062_111892158_111890120_111890244_111893083_111893969
0.00240
0.238
DataSet_01_100
View details
ADNP
49521302_49521386_49520425_49520538_49545187_49545353
0.00666
-0.057
DataSet_01_100
View details
ADRM1
60883423_60883526_60883076_60883234_60883710_60883918
0.00416
0.027
DataSet_01_100
View details
AFMID
76201683_76201819_76198783_76198832_76202026_76202131
0.00276
0.194
DataSet_01_100
View details
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A1CF
52603747_52603882_52619601_52619745_52601621_52601752
0.00439
0.242
DataSet_01_100
View details
ABCC1
16180680_16180848_16184261_16184445_16177222_16177399
0.00554
-0.139
DataSet_01_100
View details
ABLIM1
116207638_116207785_116211382_116211430_116205070_116205162
0.00004
0.118
DataSet_01_100
View details
ACADSB
124797262_124797363_124799981_124800188_124793871_124794031
0.00002
0.416
DataSet_01_100
View details
ACSL3
223752547_223752606_223765391_223765498_223725651_223725976
0.00503
0.067
DataSet_01_100
View details
ACTN4
39200896_39200982_39201915_39202001_39200034_39200116
0.00004
0.04
DataSet_01_100
View details
AFP
74306318_74306530_74309063_74309161_74303890_74304023
0.00097
0.064
DataSet_01_100
View details
AGO2
141545566_141545668_141549418_141549553_141542514_141542714
0.00294
0.199
DataSet_01_100
View details
AMBP
116837239_116837316_116838945_116839020_116836315_116836432
0.00274
0.124
DataSet_01_100
View details
APOB
21242594_21242777_21245702_21245914_21241863_21241985
0.00539
-0.236
DataSet_01_100
View details
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ARHGEF40
21555159_21555622_21555159_21555264_21556126_21556257
0.00308
0.114
DataSet_01_100
View details
ARHGEF7
111932884_111933092_111932884_111933024_111935485_111935710
0.00816
-0.094
DataSet_01_100
View details
CCAR1
70509280_70509442_70509280_70509413_70513608_70513834
0.00532
-0.195
DataSet_01_100
View details
CDK3
73998591_73998722_73998591_73998693_73999275_73999479
0.00283
0.013
DataSet_01_100
View details
FST
52780045_52780162_52780045_52780123_52780829_52781018
0.00174
-0.174
DataSet_01_100
View details
IL32
3117377_3117614_3117377_3117416_3117984_3118011
0.00218
0.061
DataSet_01_100
View details
KIFC2
145692643_145692775_145692643_145692724_145692867_145693370
0.00743
0.2
DataSet_01_100
View details
N4BP2L2
33112754_33112970_33112819_33112970_33109905_33111164
0.00397
-0.143
DataSet_01_100
View details
PHPT1
139744464_139745012_139744464_139744589_139745206_139745474
0.00022
0.08
DataSet_01_100
View details
PILRB
99933736_99933960_99933736_99933843_99935801_99935887
0.00930
0.176
DataSet_01_100
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Showing 1 to 10 of 15 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABC7-42389800N19.1
90565_90655_90586_90655_89594_89827
0.00853
0.228
DataSet_01_100
View details
APOA2
161192707_161192799_161192707_161192784_161193139_161193215
0.00000
0.124
DataSet_01_100
View details
APOA2
161192707_161192840_161192707_161192784_161193139_161193215
0.00602
0.006
DataSet_01_100
View details
ATF6B
32084813_32084907_32084813_32084884_32085099_32085181
0.00036
-0.069
DataSet_01_100
View details
C1orf109
38148990_38149148_38148990_38149113_38151944_38152124
0.00175
0.07
DataSet_01_100
View details
CDC37
10506110_10506372_10506110_10506219_10506603_10506879
0.00609
0.021
DataSet_01_100
View details
FAXDC2
154214402_154214679_154214402_154214494_154217690_154217738
0.00817
-0.112
DataSet_01_100
View details
GNB2L1
180665169_180665368_180665169_180665239_180666066_180666177
0.00400
-0.026
DataSet_01_100
View details
HNRNPC
21679564_21679746_21679564_21679722_21679968_21680082
0.00687
-0.039
DataSet_01_100
View details
IDS
148584841_148585019_148584841_148584975_148585686_148585823
0.00585
-0.209
DataSet_01_100
View details
Showing 1 to 10 of 26 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AP1G2
24030720_24031624_24030720_24030844_24031170_24031624
0.00163
0.146
DataSet_01_100
View details
C17orf76-AS1
16342894_16343567_16342894_16343017_16343498_16343567
0.00076
-0.041
DataSet_01_100
View details
CCNL2
1326145_1328183_1326145_1326955_1327975_1328183
0.00189
-0.069
DataSet_01_100
View details
CDK5RAP3
46051765_46052703_46051765_46051814_46052524_46052703
0.00861
-0.104
DataSet_01_100
View details
CYP4F2
16003118_16003392_16003118_16003246_16003338_16003392
0.00850
-0.082
DataSet_01_100
View details
EIF1
39846029_39846441_39846029_39846193_39846339_39846441
0.00500
0.026
DataSet_01_100
View details
EIF5A
7214668_7214970_7214668_7214800_7214896_7214970
0.00199
0.011
DataSet_01_100
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HAL
96387549_96387755_96387549_96387616_96387703_96387755
0.00225
0.187
DataSet_01_100
View details
HNRNPH1
179043908_179044111_179043908_179043959_179044051_179044111
0.00410
-0.041
DataSet_01_100
View details
IL32
3115369_3115827_3115369_3115495_3115781_3115827
0.00599
0.113
DataSet_01_100
View details
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
201350983
C
T
0.00768
LAD1
-
FALSE
chr1
1683565
G
A
7.19943E-05
NADK
-
FALSE
chr1
93297590
C
A
0.00325
.
FALSE
chr1
115110683
A
C
0.00168
BCAS2
-
FALSE
chr1
24999101
G
T
0.00100
SRRM1
+
FALSE
chr1
26856462
T
G
0.00201
RPS6KA1
+
FALSE
chr1
247319705
T
G
6.58458E-05
ZNF124
-
FALSE
chr1
26608017
T
A
3.67009E-06
.
FALSE
chr1
9740894
C
T
0.00097
PIK3CD,PIK3CD-AS2
+,-
FALSE
MLT1F1
SINE,Alu
chr1
36067925
T
C
1.81623E-06
PSMB2
-
TRUE
AluSz
SINE,Alu
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression