Dataset Overview
RBP
CCAR2
Knock-Method
shRNA
RBP Family
S1-like
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR237IWZ
Platform
HiSeq
Pubmed ID
32252787
CCAR2 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of CCAR2
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1BG
8.64
10.82
0.26659
0.04628
0.16350
AARS2
6.39
5.18
-0.32954
0.00912
0.05175
AASS
10.55
8.13
-0.46009
0.00018
0.00249
AATK
2.13
2.27
-0.50475
0.04733
0.16596
ABAT
27.42
31.64
0.21458
0.00499
0.03289
ABCA1
19.68
23.55
0.23785
0.00204
0.01676
ABCA11P
3.52
2.71
-0.40863
0.04669
0.16443
ABCA8
0.63
0.51
0.84677
0.04084
0.15138
ABCB1
17.1
21.8
0.36497
2.81381E-05
0.00057
ABCC2
71.28
89.58
0.25991
0.00052
0.00586
Showing 1 to 10 of 3,851 entries
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Function Analysis of Target Genes of CCAR2
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A2M
9264972_9265151_9264754_9264807_9265955_9266139
0.00587
-0.496
DataSet_01_102
View details
ABCA7
1051940_1052125_1051447_1051585_1052212_1052285
0.00825
-0.2
DataSet_01_102
View details
ABCC2
101579184_101579299_101578845_101579026_101590063_101590190
0.00359
-0.036
DataSet_01_102
View details
ABCC2
101579193_101579299_101578845_101579026_101590063_101590190
0.00742
-0.029
DataSet_01_102
View details
ABCC2
101576820_101576911_101572774_101572901_101577064_101577241
0.00838
-0.101
DataSet_01_102
View details
ABHD12
25319520_25319640_25303960_25304066_25319862_25319987
0.00374
-0.021
DataSet_01_102
View details
ABI2
204240779_204240855_204231599_204231767_204244930_204245000
0.00479
0.066
DataSet_01_102
View details
ACSS2
33509765_33509795_33509450_33509669_33511125_33511234
0.00356
-0.04
DataSet_01_102
View details
ADAMTS6
64592934_64593071_64587155_64587297_64595811_64595958
0.00862
-0.261
DataSet_01_102
View details
ADAT1
75652483_75652538_75651134_75651170_75654163_75654232
0.00309
-0.08
DataSet_01_102
View details
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A2M
9221335_9221438_9222340_9222409_9220778_9220820
0.00000
-0.145
DataSet_01_102
View details
ABAT
8829555_8829666_8839857_8839955_8768421_8768568
0.00001
-0.178
DataSet_01_102
View details
ACTN4
39200896_39200982_39201915_39202001_39200034_39200116
0.00084
0.032
DataSet_01_102
View details
AFMID
76200908_76200981_76201683_76201819_76198783_76198832
0.00490
0.277
DataSet_01_102
View details
AFTPH
64800079_64800202_64806619_64806680_64796756_64796813
0.00009
-0.423
DataSet_01_102
View details
AGFG1
228399560_228399593_228399623_228399741_228398264_228398474
0.00192
0.301
DataSet_01_102
View details
AHSG
186336324_186336426_186337645_186337729_186334231_186334316
0.00092
-0.007
DataSet_01_102
View details
ALB
74272345_74272478_74275071_74275140_74270832_74270890
0.00075
-0.5
DataSet_01_102
View details
AP1G2
24033254_24033368_24033368_24033430_24032924_24033065
0.00188
0.134
DataSet_01_102
View details
APEH
49711921_49712054_49712615_49712742_49711799_49711846
0.00003
-0.183
DataSet_01_102
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Showing 1 to 10 of 132 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ALB
74279290_74279307_74279290_74279299_74280751_74280884
0.00000
-0.015
DataSet_01_102
View details
ANAPC11
79849607_79849729_79849607_79849709_79851427_79851490
0.00025
-0.578
DataSet_01_102
View details
ATG16L1
234181611_234182423_234181611_234181698_234183321_234183424
0.00299
0.305
DataSet_01_102
View details
BCL2L2-PABPN1
23793346_23793537_23793346_23793498_23794455_23794538
0.00546
0.106
DataSet_01_102
View details
CFB
31915732_31915971_31915732_31915858_31916150_31916289
0.00316
0.031
DataSet_01_102
View details
CPNE1
34220084_34220307_34220232_34220307_34219866_34219947
0.00058
-0.096
DataSet_01_102
View details
CPNE1
34252681_34252854_34252800_34252854_34220716_34220845
0.00782
-0.114
DataSet_01_102
View details
CPSF3
9607835_9608104_9607835_9607905_9611471_9611568
0.00303
0.028
DataSet_01_102
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CYC1
145150388_145150598_145150388_145150576_145150735_145150932
0.00830
0.212
DataSet_01_102
View details
DAZAP1
1422346_1422584_1422346_1422395_1425876_1425959
0.00002
0.062
DataSet_01_102
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Showing 1 to 10 of 34 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ANKRD36
97890542_97890616_97890545_97890616_97884910_97884983
0.00231
-0.257
DataSet_01_102
View details
ANXA9
150956358_150956545_150956450_150956545_150955813_150955910
0.00890
0.151
DataSet_01_102
View details
AP2M1
183898349_183898529_183898432_183898529_183897956_183898039
0.00724
0.022
DataSet_01_102
View details
APOA2
161192707_161192840_161192707_161192784_161193139_161193215
0.00021
-0.014
DataSet_01_102
View details
APOB
21265232_21265410_21265232_21265348_21266384_21266423
0.00810
0.014
DataSet_01_102
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ATXN2L
28843507_28843720_28843525_28843720_28842282_28842393
0.00177
0.054
DataSet_01_102
View details
CCDC23
43282101_43282276_43282101_43282251_43282860_43282923
0.00280
0.107
DataSet_01_102
View details
CDK8
26975602_26975761_26975605_26975761_26975405_26975484
0.00394
-0.204
DataSet_01_102
View details
CEP78
80866820_80866959_80866823_80866959_80863677_80863789
0.00161
0.346
DataSet_01_102
View details
CFB
31912756_31912963_31912954_31912963_31912561_31912630
0.00421
0.049
DataSet_01_102
View details
Showing 1 to 10 of 47 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ANO9
431693_431906_431693_431767_431847_431906
0.00653
-0.245
DataSet_01_102
View details
APOA2
161193170_161193349_161193170_161193215_161193308_161193349
0.00017
-0.208
DataSet_01_102
View details
ARRDC1
140507347_140507962_140507347_140507458_140507911_140507962
0.00017
-0.225
DataSet_01_102
View details
ATF4
39916568_39917676_39916568_39916756_39917358_39917676
0.00107
0.048
DataSet_01_102
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CERS2
150939231_150939678_150939231_150939338_150939549_150939678
0.00799
-0.013
DataSet_01_102
View details
COL7A1
48607566_48607767_48607566_48607611_48607707_48607767
0.00442
0.237
DataSet_01_102
View details
CPNE1
34218879_34219119_34218879_34218956_34219035_34219119
0.00170
-0.028
DataSet_01_102
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CUTA
33384673_33384919_33384673_33384746_33384873_33384919
0.00668
0.515
DataSet_01_102
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DCXR
79994419_79994639_79994419_79994519_79994596_79994639
0.00002
-0.065
DataSet_01_102
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DHRS2
24109002_24112428_24109002_24109104_24110874_24112428
0.00000
0.187
DataSet_01_102
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
153533813
A
T
0.00451
S100A2
-
FALSE
chr1
16929100
C
T
0.00249
NBPF1
-
FALSE
LTR16B2
SINE,Alu
chr1
53291425
A
G
2.55913E-05
ZYG11B
+
TRUE
AluJr
SINE,Alu
chr1
145693061
A
G
0.00158
NBPF20,NBPF10
+
TRUE
AluSz6
SINE,Alu
chr1
240255560
G
A
0.00810
FMN2
+
FALSE
(GGC)n
SINE,Alu
chr1
58999651
T
G
0.00980
OMA1
-
FALSE
chr1
160967754
T
C
0.00563
F11R
-
TRUE
(T)n
SINE,Alu
chr1
16892279
C
A
0.00326
NBPF1
-
FALSE
chr1
27204437
T
C
0.00319
.
FALSE
AluSg7
SINE,Alu
chr1
15904318
C
T
9.04121E-06
AGMAT
-
FALSE
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression