RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr11	124954212	C	A	0.00827	SLC37A2	+	FALSE
chr14	105676287	C	T	0.00036	BRF1	-	FALSE
chr11	68523504	T	C	0.00029	CPT1A	-	TRUE	AluSq	SINE,Alu
chr1	9788153	G	A	0.00198	PIK3CD	+	FALSE	AluSx	SINE,Alu
chr8	12286573	G	A	0.00052	FAM86B2	-	FALSE
chr20	29631557	A	G	0.00159	FRG1BP	+	FALSE
chr1	155161736	G	A	0.00088	MUC1	-	FALSE
chr17	43364288	A	G	0.00345	MAP3K14	-	FALSE
chr1	16918734	G	C	0.00083	NBPF1	-	FALSE
chr8	143744556	T	C	0.00586	JRK	-	TRUE	AluJr	SINE,Alu
chr2	38522138	G	T	0.00769	ATL2	-	FALSE
chr1	36068227	T	C	0.00398	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	70718271	G	A	0.00273		.	FALSE
chr19	21366997	A	G	0.00727	ZNF431	+	TRUE	AluSc	SINE,Alu
chr9	115447527	T	C	0.00200	INIP	-	TRUE	AluJb	SINE,Alu
chr9	137534059	C	A	0.00626	COL5A1	+	FALSE
chr2	38971639	A	T	0.00019	SRSF7	-	FALSE
chr4	247533	A	G	0.00972	ZNF876P	+	FALSE
chr1	53680205	C	T	9.80404E-07	C1orf123	-	FALSE
chr2	37331627	T	C	0.00910		.	FALSE	AluJb	SINE,Alu
chr2	96934504	T	C	0.00021	CIAO1	+	FALSE
chr1	36386884	C	T	0.00024	AGO1	+	FALSE
chr4	177249593	T	G	0.00038	SPCS3	+	FALSE	(T)n	SINE,Alu
chr6	44222156	A	T	0.00856	SLC35B2	-	FALSE
chr1	10367424	G	A	0.00286	KIF1B	+	FALSE	AluSx	SINE,Alu
chr1	36068231	T	C	0.00121	PSMB2	-	TRUE	AluSc	SINE,Alu
chr19	18476206	A	G	0.00156	PGPEP1	+	TRUE	AluJb	SINE,Alu
chr1	1421186	C	T	0.00834	ATAD3B	+	FALSE
chr1	3730332	T	C	0.00025	CEP104	-	TRUE	AluSx3	SINE,Alu
chr17	74561213	A	G	0.00241	SNHG16	+	FALSE
chr7	55433880	G	C	0.00115	LANCL2	+	FALSE
chr5	35064460	G	C	0.00920	PRLR	-	FALSE
chr14	70838368	T	C	0.00561	SYNJ2BP-COX16,SYNJ2BP	-	TRUE	AluSg	SINE,Alu
chr1	9328120	A	G	4.35354E-06	H6PD	+	TRUE	AluJr	SINE,Alu
chr1	9331227	A	G	0.00181	H6PD	+	TRUE	AluSx	SINE,Alu
chr3	16357708	A	G	0.00098	RFTN1	-	FALSE
chr1	120539742	G	A	0.00469	NOTCH2	-	FALSE
chr19	19792403	A	G	1.20818E-05	ZNF101	+	TRUE	AluJb	SINE,Alu
chr15	65442483	T	C	0.00523	CLPX	-	TRUE	AluSg4	SINE,Alu
chr1	899810	G	A	3.12519E-10	KLHL17	+	FALSE
chr6	33268621	T	C	0.00367		.	FALSE	AluY	SINE,Alu
chr1	10518831	T	C	0.00410		.	FALSE	AluSx1	SINE,Alu
chr19	7084638	A	G	0.00508	ZNF557	+	TRUE	AluJb	SINE,Alu
chr5	151041877	C	A	1.29615E-05	SPARC	-	FALSE
chr1	46077218	A	G	0.00783	NASP	+	TRUE	AluSc8	SINE,Alu
chr1	160967938	T	C	0.00270	F11R	-	TRUE	AluSp	SINE,Alu
chr2	176042865	G	T	0.00887	ATP5G3	-	FALSE
chr1	120612194	C	G	0.00561	NOTCH2	-	FALSE	(CCG)n	SINE,Alu
chr3	10005392	T	C	8.76084E-06	EMC3	-	FALSE	AluSg7	SINE,Alu
chr10	61548857	C	A	0.00046	CCDC6	-	FALSE
chr1	10517527	T	C	8.32015E-05		.	FALSE	AluSx1	SINE,Alu
chr1	36644564	C	T	1.56500E-06	MAP7D1	+	FALSE
chr4	177252326	A	G	0.00098	SPCS3	+	TRUE
chr1	142688599	A	G	0.00860		.	FALSE
chr17	49041732	T	C	0.00135	SPAG9	-	TRUE	AluSx	SINE,Alu
chr6	52267967	A	C	0.00424	PAQR8	+	FALSE
chr11	133689	G	A	0.00856		.	FALSE	AluJb	SINE,Alu
chr1	154128837	G	T	0.00032	TPM3	-	FALSE
chr1	1251841	T	C	0.00915	CPSF3L	-	TRUE	AluSq2	SINE,Alu
chr4	39552022	T	C	0.00840	UGDH-AS1,SMIM14	+,-	FALSE	AluSx	SINE,Alu
chr10	75008797	T	C	0.00824	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr1	16958833	T	A	0.00765		.	FALSE
chr1	27204447	T	C	0.00513		.	FALSE	AluSg7	SINE,Alu
chr1	3729587	A	G	0.00580	CEP104	-	FALSE	(AT)n	SINE,Alu
chr1	162497738	G	C	0.00390	UHMK1	+	FALSE
chr1	118408218	C	A	0.00857	GDAP2	-	FALSE
chr1	175914284	A	G	0.00036	RFWD2	-	FALSE
chr3	10290515	G	A	0.00904	TATDN2	+	FALSE
chr16	15794312	C	T	0.00796	NDE1	+	FALSE	AluSz	SINE,Alu
chr1	40430967	G	T	0.00567	MFSD2A	+	FALSE
chr1	36067851	T	C	0.00269	PSMB2	-	TRUE	AluSz	SINE,Alu
chr2	232028396	A	G	0.00701	PSMD1	+	FALSE
chr1	94995653	A	C	0.00035	F3	-	FALSE	AluSx	SINE,Alu
chr3	169810030	T	C	0.00659	PHC3	-	TRUE	AluSx	SINE,Alu
chr16	2821024	C	T	0.00406	SRRM2	+	FALSE
chr2	37327590	T	C	0.00364		.	FALSE
chr14	76045220	T	C	0.00421	LOC102724153,FLVCR2	+,-	FALSE
chr1	46075191	C	A	0.00056	NASP	+	FALSE	A-rich	SINE,Alu
chr2	201774185	T	C	0.00932		.	FALSE	AluSz	SINE,Alu
chr1	235383188	A	G	0.00531	ARID4B	-	FALSE
chr1	19542250	T	C	3.30618E-05	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	16889624	T	C	0.00794	NBPF1	-	TRUE
chr1	16889041	C	T	0.00429	NBPF1	-	FALSE
chr1	148753329	A	G	7.42327E-05		.	FALSE
chr1	10368092	A	C	0.00945	KIF1B	+	FALSE
chr3	69038160	G	A	0.00557	EOGT	-	FALSE
chr1	94995411	C	A	0.00849	F3	-	FALSE	AluSx	SINE,Alu
chr2	91805938	A	G	0.00000		.	FALSE	MLT1H1	SINE,Alu
chr8	11701490	T	C	2.07071E-11	CTSB	-	TRUE	AluSx1	SINE,Alu
chr22	38285016	A	G	0.00030		.	FALSE	AluSz	SINE,Alu
chr19	46053172	T	C	0.00098	OPA3	-	TRUE	AluSx1	SINE,Alu
chr1	990984	G	A	0.00018	AGRN	+	FALSE
chr1	204521576	A	G	0.00021	MDM4	+	TRUE	AluSg	SINE,Alu
chr3	121351287	A	G	0.00656	HCLS1	-	FALSE
chr3	52237970	C	T	0.00017	ALAS1	+	FALSE
chr2	208619377	A	G	0.00769	CCNYL1	+	TRUE	FAM	SINE,Alu
chr6	116600810	G	A	0.00028	DSE,TSPYL1	+,-	FALSE
chr3	44869002	G	T	0.00012	KIF15	+	FALSE
chr1	110136321	T	A	0.00721	GNAI3	+	FALSE
chr11	16771525	T	C	0.00014	C11orf58	+	FALSE
chr15	85185502	T	C	0.00058	WDR73,SCAND2P	+,-	FALSE	AluSc	SINE,Alu
chr1	145369556	A	G	0.00061	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr1	145209366	A	G	0.00499	NBPF20,NOTCH2NL	+	FALSE
chr1	162494683	G	T	0.00269	UHMK1	+	FALSE	AluSg4	SINE,Alu
chr3	37031951	G	A	0.00154	EPM2AIP1	-	FALSE	(A)n	SINE,Alu
chr1	26143725	A	T	0.00988	SEPN1	+	FALSE	AluSx	SINE,Alu
chr1	120162442	T	C	0.00065	ZNF697	-	FALSE
chr2	86249961	T	C	0.00292	LOC90784	-	TRUE	AluJr	SINE,Alu
chr5	149829071	T	C	0.00407	RPS14	-	FALSE
chr1	93827764	A	G	0.00056	DR1	+	FALSE
chr16	75479467	T	C	0.00160	TMEM170A	-	TRUE	AluJb	SINE,Alu
chr3	12624763	T	C	1.62214E-06	MKRN2	+	FALSE
chr1	62579758	G	A	0.00250	PATJ	+	FALSE
chr8	30536544	T	C	0.00122	GSR	-	TRUE	AluSp	SINE,Alu
chr2	68402796	C	T	0.00656	PNO1	+	FALSE
chr1	6259433	G	A	0.00522	RPL22	-	FALSE	G-rich	SINE,Alu
chr3	5258431	G	A	3.44849E-09	EDEM1	+	FALSE
chr2	206988075	G	A	0.00672	NDUFS1	-	FALSE
chr4	39550978	T	C	3.11849E-06	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr7	65619242	A	G	0.00545	CRCP	+	TRUE	AluSz6	SINE,Alu
chr1	51822219	G	A	0.00283	EPS15	-	FALSE
chr3	101542436	A	G	0.00023	NXPE3	+	TRUE	AluJr	SINE,Alu
chr1	78342729	A	G	0.00175	MIGA1	+	TRUE	FRAM	SINE,Alu
chr5	43575020	T	C	8.37337E-06	NNT-AS1	-	TRUE	AluSq2	SINE,Alu
chr1	117617705	A	G	0.00081	TTF2	+	FALSE
chr1	45975673	A	G	0.00410	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr2	201774600	T	C	1.56082E-05		.	FALSE	AluJr4	SINE,Alu
chr3	50139142	A	G	0.00467	RBM5	+	FALSE
chr1	19543459	T	C	0.00074	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr4	26433556	A	C	3.10862E-15	RBPJ	+	FALSE
chr1	16892275	C	T	0.00087	NBPF1	-	FALSE
chr1	156567496	C	T	0.00012	GPATCH4	-	FALSE	MIR3	SINE,Alu
chr20	29631604	G	A	0.00045	FRG1BP	+	FALSE
chr7	91742141	T	C	0.00100	CYP51A1	-	FALSE	AluSx3	SINE,Alu
chr16	89627988	G	T	5.83717E-06	RPL13	+	FALSE
chr2	120021785	T	C	0.00751	STEAP3	+	FALSE
chr3	195395402	C	A	0.00066	SDHAP2	+	FALSE
chr1	145282799	G	A	0.00915	NBPF20,NOTCH2NL	+	FALSE
chr1	119574537	G	A	0.00255	WARS2	-	FALSE
chr1	93617546	T	C	0.00026	TMED5	-	FALSE
chr1	52824084	G	A	0.00207	CC2D1B	-	FALSE
chr5	149823789	G	T	0.00793		.	FALSE
chr1	36068243	T	C	0.00217	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	9643054	A	G	5.80579E-05		.	FALSE	AluSx	SINE,Alu
chr1	67874731	T	C	0.00613	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr9	124094998	T	G	0.00299	GSN	+	FALSE	(TG)n	SINE,Alu
chr3	119545349	T	C	0.00805	GSK3B	-	FALSE
chr1	10520683	T	C	0.00124	DFFA	-	TRUE	AluSc8	SINE,Alu
chr4	39552175	T	C	0.00010	UGDH-AS1,SMIM14	+,-	FALSE	AluSx	SINE,Alu
chr1	10520154	T	C	0.00018		.	FALSE	AluSx	SINE,Alu
chr1	100489571	G	A	1.40531E-05	SLC35A3	+	FALSE	AluSc	SINE,Alu
chr1	145513125	A	G	0.00274	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	160966351	T	C	0.00023	F11R	-	TRUE	AluSg	SINE,Alu
chr1	40537924	G	A	0.00476	CAP1	+	FALSE	(A)n	SINE,Alu
chr2	191556847	G	T	9.96724E-06	NAB1	+	FALSE
chr9	139417333	G	A	0.00463	NOTCH1	-	FALSE
chr1	109475543	A	G	0.00495	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr1	114938105	T	A	0.00430	TRIM33	-	FALSE
chr5	32586597	G	C	0.00970	SUB1	+	FALSE
chr1	85647107	T	C	0.00255	SYDE2	-	TRUE	AluSx	SINE,Alu
chr3	196078364	G	A	6.64958E-05		.	FALSE	GA-rich	SINE,Alu
chr1	145369709	A	G	0.00019	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr4	165998692	T	C	0.00568	TMEM192	-	TRUE	AluSg	SINE,Alu
chr1	28662212	A	G	0.00098	MED18	+	TRUE	AluSq2	SINE,Alu
chr7	131188652	G	C	0.00684	PODXL	-	FALSE	MIR3	SINE,Alu
chr7	38764358	T	C	0.00675	VPS41	-	TRUE	AluSp	SINE,Alu
chr10	79570873	G	T	0.00292	DLG5	-	FALSE
chr1	10043358	A	G	0.00982	NMNAT1	+	TRUE	AluSx3	SINE,Alu
chr1	16890644	C	T	0.00439	NBPF1	-	FALSE
chr1	9163502	T	C	0.00366		.	FALSE	AluSp	SINE,Alu
chr1	155853251	A	G	0.00207	SYT11	+	TRUE	AluJb	SINE,Alu
chr1	161160460	T	A	0.00298	ADAMTS4	-	FALSE	(CA)n	SINE,Alu
chr1	1534826	C	T	0.00382	FNDC10	-	FALSE
chr19	19793875	A	G	0.00198	ZNF101	+	TRUE	AluSc8	SINE,Alu
chr2	136542427	T	A	0.00075	UBXN4	+	FALSE	L1ME4b	SINE,Alu
chr7	158536267	T	C	0.00298	ESYT2	-	FALSE
chr1	33149373	A	G	0.00264	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr4	89181478	T	C	0.00656	PPM1K	-	TRUE	AluSx1	SINE,Alu
chr1	6583066	T	C	0.00173	NOL9	-	TRUE	AluSx4	SINE,Alu
chr1	12082926	A	G	0.00229	MIIP	+	FALSE
chr1	179042555	A	G	0.00922	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr1	33148282	A	G	0.00825	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr15	91044377	T	C	0.00440	IQGAP1	+	FALSE
chr1	11188109	C	A	0.00817	MTOR	-	FALSE
chr1	11089835	A	G	0.00065	MASP2	-	FALSE	AluSp	SINE,Alu
chr1	113673737	A	G	0.00798		.	FALSE	AluSx1	SINE,Alu
chr1	205687351	T	C	2.02150E-05	NUCKS1	-	FALSE	(T)n	SINE,Alu
chr2	219100202	C	T	0.00027	ARPC2	+	FALSE	AluJr	SINE,Alu
chr1	11159823	T	C	0.00186	EXOSC10,LOC105376736	+,-	FALSE
chr1	178444613	T	G	0.00630	RASAL2	+	FALSE
chr2	73957124	A	G	2.00679E-05	TPRKB	-	FALSE
chr1	11782984	A	G	0.00542		.	FALSE	AluSx	SINE,Alu
chr4	10443061	G	T	0.00057	ZNF518B	-	FALSE
chr4	119555188	C	A	0.00205	LOC729218	+	FALSE
chr17	73940918	T	C	6.48265E-05	ACOX1	-	TRUE	AluSx1	SINE,Alu
chr10	53456599	A	G	0.00339	PRKG1,CSTF2T	+,-	FALSE
chr1	90152146	C	T	1.61967E-05	LRRC8C	+	FALSE
chr10	79800443	A	G	0.00971	RPS24	+	FALSE
chr7	100739267	G	A	0.00654		.	FALSE	AluSx	SINE,Alu
chr5	17276742	G	A	0.00320	BASP1	+	FALSE
chr5	87566382	T	A	0.00997	TMEM161B-AS1	+	FALSE
chr1	16932428	C	G	0.00197	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	40539203	A	T	0.00179	PPT1	-	FALSE
chr1	228520973	C	G	0.00875	OBSCN	+	FALSE
chr2	178129412	G	T	0.00071	NFE2L2	-	FALSE	(CGG)n	SINE,Alu
chr1	144828683	C	G	3.91144E-05	NBPF20,NBPF9	+	FALSE
chr1	179012947	C	G	0.00501	FAM20B	+	FALSE
chr20	35869801	G	A	0.00150	RPN2	+	FALSE
chr15	33064791	G	A	0.00203	FMN1	-	FALSE
chr5	180682610	T	C	0.00014	CTC-338M12.4	+	FALSE
chr2	74442550	A	T	0.00826		.	FALSE
chr1	19934900	G	A	0.00605	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr9	140729536	C	A	0.00699	EHMT1	+	FALSE
chr1	1684347	C	T	0.00550	NADK	-	FALSE
chr1	67874849	T	C	0.00169	SERBP1	-	TRUE	AluSx	SINE,Alu
chr2	206987725	T	C	0.00625		.	FALSE	AluJb	SINE,Alu
chr1	145283718	G	A	0.00989	NBPF20,NOTCH2NL	+	FALSE
chr1	19543352	T	C	0.00086	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr4	1205667	A	C	0.00990	CTBP1-AS,CTBP1	+,-	FALSE	(A)n	SINE,Alu
chr1	45975266	A	G	0.00188	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr1	16890644	C	T	0.00533	NBPF1	-	FALSE
chr1	226333558	A	C	0.00052	ACBD3	-	FALSE	(CAAAA)n	SINE,Alu
chr1	54493259	T	C	0.00203	TMEM59	-	TRUE	AluSz6	SINE,Alu
chr1	120839681	C	A	0.00077	FAM72B	+	FALSE

RBP	HNRNPM
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR746NIM
Platform	HiSeq
Pubmed ID	32252787

HNRNPM - Target Gene Network