RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr10	28971535	T	A	0.00169	BAMBI	+	FALSE
chr1	19578192	G	A	0.00246	MRTO4	+	FALSE
chr2	37328075	T	C	2.30710E-05		.	FALSE
chr1	100547854	T	G	0.00080	MFSD14A	+	FALSE
chr2	85775237	T	C	6.42894E-05	GGCX	-	TRUE	AluSx4	SINE,Alu
chr5	140564263	C	T	0.00475	PCDHB16	+	FALSE
chr3	196079293	T	C	0.00308		.	FALSE	AluSx	SINE,Alu
chr1	19542250	T	C	3.30618E-05	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr15	63363388	G	T	0.00096	TPM1	+	FALSE
chr1	110201699	T	C	0.00513	GSTM4	+	FALSE
chr1	66099013	C	A	7.87351E-06	LEPR	+	FALSE
chr1	28824065	C	T	0.00345	PHACTR4	+	FALSE
chr3	196662641	T	C	0.00059	NCBP2	-	FALSE
chr12	133298938	A	G	0.00034	PGAM5	+	TRUE	AluSg	SINE,Alu
chr1	144931727	G	A	0.00521	NBPF20,PDE4DIP	+,-	FALSE
chr1	62579758	G	A	0.00250	PATJ	+	FALSE
chr3	148748197	T	A	0.00026	HLTF	-	FALSE
chr4	186081819	C	T	3.85218E-06	CFAP97	-	FALSE
chr1	36067817	T	C	7.91657E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	10440643	A	G	0.00055	KIF1B	+	TRUE	AluSx	SINE,Alu
chr1	52253793	C	T	0.00966	OSBPL9	+	FALSE
chr1	1597403	C	T	0.00912	CDK11B,SLC35E2B	-	FALSE
chr3	33909025	A	T	0.00796	PDCD6IP	+	FALSE
chr1	10520154	T	C	0.00124		.	FALSE	AluSx	SINE,Alu
chr14	72041443	C	T	0.00842	SIPA1L1	+	FALSE
chr3	167727417	C	T	2.31470E-08	GOLIM4	-	FALSE
chr3	73115786	T	C	3.88619E-05	PPP4R2	+	FALSE
chr1	1534205	G	A	1.69659E-11	FNDC10	-	FALSE
chr17	49042216	T	C	0.00746	SPAG9	-	TRUE	AluJb	SINE,Alu
chr1	184761312	T	C	0.00443	FAM129A	-	TRUE	AluJo	SINE,Alu
chr17	4929861	A	G	0.00705	KIF1C	+	TRUE	AluJb	SINE,Alu
chr2	62095565	A	T	0.00355	CCT4	-	FALSE
chr2	176791182	T	C	0.00015	LNPK	-	TRUE	MSTD	SINE,Alu
chr1	109818151	T	C	0.00855	CELSR2	+	FALSE
chr1	899810	G	A	3.12519E-10	KLHL17	+	FALSE
chr3	120115286	T	G	0.00077	FSTL1	-	FALSE
chr1	26143725	A	T	0.00112	SEPN1	+	FALSE	AluSx	SINE,Alu
chr1	28608338	A	G	0.00341	SESN2	+	FALSE
chr3	152883475	A	T	0.00384	RAP2B	+	FALSE
chr1	53288870	A	G	0.00122	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr11	68523016	T	C	0.00016	CPT1A	-	TRUE	AluY	SINE,Alu
chr1	22352040	G	T	0.00255	LOC101928043,LINC00339	+,-	FALSE
chr1	211836207	T	A	0.00432	NEK2	-	FALSE
chr1	6283332	T	C	0.00387	ICMT	-	TRUE	AluSx3	SINE,Alu
chr2	217366194	C	A	0.00359		.	FALSE
chr3	183209065	T	C	0.00576	KLHL6	-	TRUE	AluSq	SINE,Alu
chr2	86364710	T	C	0.00056	PTCD3	+	FALSE
chr1	38275432	G	T	0.00536	MTF1	-	FALSE
chr7	116339672	C	T	0.00876	MET	+	FALSE
chr1	9644587	A	G	0.00022		.	FALSE	AluSx	SINE,Alu
chr5	159829024	G	C	0.00400	SLU7	-	FALSE
chr19	18306990	G	C	0.00090	MPV17L2	+	FALSE
chr4	109551183	T	A	0.00270	RPL34	+	FALSE
chr2	120439459	C	A	0.00273	TMEM177	+	FALSE
chr1	143399181	T	G	0.00832		.	FALSE
chr1	16203171	C	T	3.13656E-06	SPEN	+	FALSE
chr1	235492546	T	G	0.00786	GGPS1	+	FALSE
chr1	19586532	A	G	0.00166	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	990773	C	T	0.00486	AGRN	+	FALSE
chr17	38438362	G	A	0.00016	WIPF2	+	FALSE	A-rich	SINE,Alu
chr1	92976590	G	A	0.00768	EVI5	-	FALSE
chr8	38829416	A	G	0.00695	PLEKHA2	+	TRUE	AluYc	SINE,Alu
chr3	150262004	A	T	0.00167	SERP1	-	FALSE
chr1	6582527	T	C	0.00139	NOL9	-	TRUE	AluSx1	SINE,Alu
chr1	10520202	T	C	0.00825		.	FALSE	AluSx	SINE,Alu
chr3	10356760	G	A	0.00951	SEC13	-	FALSE	MIRb	SINE,Alu
chr7	44841237	T	A	8.97456E-05	PPIA	+	FALSE
chr10	60047612	A	G	0.00015	CISD1	+	FALSE	(A)n	SINE,Alu
chr16	70695982	T	C	0.00926	MTSS1L	-	FALSE
chr8	25272446	A	T	0.00405	DOCK5	+	FALSE
chr1	74672474	G	A	0.00292	FPGT-TNNI3K,FPGT	+	FALSE	X12_DNA	SINE,Alu
chr3	126755134	C	T	0.00920	PLXNA1	+	FALSE
chr3	15114759	G	A	0.00595	RBSN	-	FALSE
chr1	10520764	T	C	0.00501	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	1595048	T	C	0.00495	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr4	10076959	C	G	6.37978E-10	WDR1	-	FALSE
chr1	143399338	G	A	0.00966		.	FALSE	L1MC4	SINE,Alu
chr17	41133087	A	G	0.00141	RUNDC1	+	FALSE
chr1	32697110	A	T	5.19592E-06	EIF3I	+	FALSE	AluSp	SINE,Alu
chr3	15112630	C	T	0.00017	RBSN	-	FALSE	AluSq2	SINE,Alu
chr1	7737792	C	G	8.96820E-06	CAMTA1	+	FALSE
chr12	125512218	A	G	0.00392		.	FALSE	AluSx1	SINE,Alu
chr1	987670	T	G	0.00148	AGRN	+	FALSE
chr1	93617406	A	T	0.00275	TMED5	-	FALSE
chr14	75202553	A	G	0.00014	FCF1	+	TRUE	AluSc	SINE,Alu
chr12	133298417	A	G	6.66134E-16	PGAM5	+	TRUE	AluSp	SINE,Alu
chr1	569782	T	C	0.00010		.	FALSE
chr1	1594977	T	C	0.00075	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr1	146033660	C	A	0.00091	NBPF20,NBPF10,NBPF25P,NBPF11	+,-	FALSE
chr1	95392593	C	T	0.00173	CNN3	-	FALSE	(GGCGCG)n	SINE,Alu
chr1	109855150	A	C	0.00251	SORT1	-	FALSE	A-rich	SINE,Alu
chr1	28858860	C	T	0.00213	RCC1	+	FALSE
chr1	78414285	T	A	0.00179	FUBP1	-	FALSE
chr1	28826150	A	G	0.00047	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	33149486	A	G	5.00374E-05	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	26161108	A	C	7.55238E-06	AUNIP	-	FALSE	AluSc8	SINE,Alu
chr1	20977533	G	C	0.00234	PINK1,PINK1-AS	+,-	FALSE
chr1	92862764	A	G	0.00415		.	FALSE	AluJr	SINE,Alu
chr1	197475873	G	A	0.00844	DENND1B	-	FALSE
chr1	213069783	A	G	0.00600	FLVCR1	+	FALSE
chr1	26143725	A	T	0.00988	SEPN1	+	FALSE	AluSx	SINE,Alu
chr3	20025662	T	G	0.00028	RAB5A,PP2D1	+,-	FALSE
chr3	14175262	T	C	3.06250E-10	TMEM43	+	FALSE
chr1	1647902	A	T	0.00191	CDK11B,CDK11A	-	FALSE
chr3	37031951	G	A	0.00914	EPM2AIP1	-	FALSE	(A)n	SINE,Alu
chr12	133297956	A	G	4.23080E-06	PGAM5	+	TRUE	AluJo	SINE,Alu
chr5	81571878	A	T	8.61300E-05	RPS23	-	FALSE
chr3	39137789	G	A	0.00579	WDR48	+	FALSE
chr4	165996811	T	C	6.80024E-05		.	FALSE	AluSg4	SINE,Alu
chr4	39550612	T	C	0.00023	UGDH-AS1,SMIM14	+,-	FALSE	AluSx1	SINE,Alu
chr1	36690599	A	G	0.00406	THRAP3	+	FALSE
chr2	30480670	G	T	0.00167	LBH	+	FALSE
chr16	88789700	C	T	0.00703	PIEZO1	-	FALSE
chr1	32373437	G	A	1.22125E-14	PTP4A2	-	FALSE
chr1	22855441	C	T	0.00884	ZBTB40	+	FALSE
chr8	124027562	C	T	0.00674	DERL1	-	FALSE
chr5	64964627	T	C	0.00998	SGTB	-	TRUE	AluSx1	SINE,Alu
chr2	206982255	T	C	0.00431		.	FALSE	AluSg7	SINE,Alu
chr2	37328013	T	C	1.05952E-05		.	FALSE
chr9	139100154	C	G	0.00464	QSOX2	-	FALSE
chr1	19543457	T	C	0.00143	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	32373837	G	T	0.00681	PTP4A2	-	FALSE	(T)n	SINE,Alu
chr1	154554947	T	G	0.00511	ADAR	-	FALSE
chrX	77083981	T	C	0.00647	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	9160982	T	C	0.00350		.	FALSE	AluJb	SINE,Alu
chr19	19791273	A	G	0.00121	ZNF101	+	TRUE	AluSq2	SINE,Alu
chr2	202083872	A	G	0.00022	CASP10	+	TRUE	AluSz	SINE,Alu
chr7	137561078	G	A	0.00558	CREB3L2	-	FALSE	(GT)n	SINE,Alu
chr1	28825370	A	G	0.00617	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr1	15990912	T	C	0.00133		.	FALSE	AluSx3	SINE,Alu
chr1	145281633	C	A	0.00510	NBPF20,NOTCH2NL	+	FALSE
chr17	43248581	C	T	0.00012	LOC105371795	-	FALSE
chr11	65179819	T	C	0.00038	FRMD8	+	FALSE
chr6	24720271	T	G	0.00839		.	FALSE
chr1	16717888	G	A	0.00118	SZRD1	+	FALSE
chr17	1684352	T	C	0.00793	SMYD4	-	TRUE	AluSx1	SINE,Alu
chr1	75175886	T	C	0.00880	CRYZ	-	FALSE
chr1	67875026	A	T	0.00557	SERBP1	-	FALSE
chr15	72635829	A	C	0.00054	HEXA	-	FALSE
chr1	26802457	C	A	0.00962	HMGN2	+	FALSE
chr4	2940085	T	C	8.20099E-05	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	39990456	G	A	0.00749	BMP8A,PPIEL	+,-	FALSE	L2b	SINE,Alu
chr7	102004769	T	G	5.29897E-05	LOC100289561,LOC100630923	+	FALSE
chr2	37331627	T	C	0.00910		.	FALSE	AluJb	SINE,Alu
chr1	53708528	T	C	0.00057	LRP8	-	FALSE	(TA)n	SINE,Alu
chr1	6165419	C	T	0.00883	CHD5	-	FALSE
chr2	203744629	T	C	0.00363		.	FALSE	AluSx1	SINE,Alu
chr1	145500933	C	T	0.00982	NBPF20,NBPF10,LIX1L	+	FALSE
chr10	102308801	G	C	0.00127	HIF1AN	+	FALSE	(GT)n	SINE,Alu
chr1	144615138	T	G	0.00196	NBPF20,NBPF9	+	FALSE
chr4	57326126	A	G	0.00017	PAICS	+	TRUE	AluJr	SINE,Alu
chr1	45244411	C	A	0.00656	RPS8	+	FALSE
chr1	179044216	A	G	0.00277	FAM20B	+	TRUE	AluSx	SINE,Alu
chr3	20025677	G	T	0.00116	RAB5A,PP2D1	+,-	FALSE
chr1	145513031	A	G	0.00014	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	100490274	A	G	0.00849	SLC35A3	+	TRUE	AluSc5	SINE,Alu
chr1	38279666	C	T	0.00521	MTF1	-	FALSE	(T)n	SINE,Alu
chr2	55452459	G	T	5.59903E-07	CLHC1	-	FALSE
chr2	201842434	T	C	1.94652E-05	FAM126B	-	TRUE	AluJb	SINE,Alu
chr2	143638991	A	C	0.00054	KYNU	+	FALSE
chr1	24022914	A	G	0.00347	RPL11	+	FALSE
chr1	10520487	T	C	0.00257		.	FALSE	AluSx1	SINE,Alu
chr6	43738977	C	T	0.00088	VEGFA	+	FALSE
chr3	15113519	C	T	0.00108	RBSN	-	FALSE
chr3	45722381	A	G	0.00996	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr1	67874697	T	C	5.54610E-06	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	9161090	A	G	0.00068		.	FALSE	AluJb	SINE,Alu
chr17	28506279	G	A	0.00634	NSRP1	+	FALSE
chrM	2619	A	T	0.00012	RNR2	+	FALSE	LSU-rRNA_Hsa	SINE,Alu
chr1	236744712	C	A	0.00054	HEATR1	-	FALSE
chr1	10520219	T	C	0.00201		.	FALSE	AluSx	SINE,Alu
chr2	37331841	C	T	0.00179		.	FALSE	L1MC4	SINE,Alu
chr2	86249961	T	C	0.00368	LOC90784	-	TRUE	AluJr	SINE,Alu
chr1	156613517	C	A	0.00011	BCAN	+	FALSE
chr1	114940216	T	G	0.00674	TRIM33	-	FALSE	(T)n	SINE,Alu
chr3	10193796	A	G	0.00291	VHL	+	TRUE	AluSx	SINE,Alu
chr2	47137976	T	C	0.00398	MCFD2	-	TRUE	AluJr	SINE,Alu
chr1	89271574	T	C	3.83690E-05	PKN2	+	FALSE
chr3	33458266	T	C	0.00035	UBP1	-	FALSE
chr1	244572645	T	G	0.00103	ADSS	-	FALSE
chr5	175816759	T	A	0.00018		.	FALSE
chr9	133997543	C	G	0.00046	AIF1L	+	FALSE
chr1	33148045	A	G	0.00264	SYNC,RBBP4	+,-	FALSE	AluSx	SINE,Alu
chr2	203742324	T	C	0.00482		.	FALSE	AluJb	SINE,Alu
chr1	20519965	G	T	0.00011	UBXN10	+	FALSE
chr1	68940885	G	A	0.00500	DEPDC1	-	FALSE	MIR	SINE,Alu
chr12	125267857	T	C	0.00702	SCARB1	-	TRUE	FRAM	SINE,Alu
chr1	70718269	A	G	0.00234		.	FALSE
chr1	89447720	G	A	0.00497	KYAT3,RBMXL1	-	FALSE
chr16	3207362	A	T	1.09222E-05		.	FALSE
chr7	29960462	G	A	5.89775E-06	SCRN1	-	FALSE
chr6	158364714	A	G	0.00442	SNX9	+	FALSE
chr1	113001409	C	T	2.24539E-06	CTTNBP2NL	+	FALSE	AluJr	SINE,Alu
chr1	1595077	T	C	0.00031	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr1	46076642	A	G	0.00552	NASP	+	TRUE	AluSx	SINE,Alu
chr5	140240514	A	G	0.00151	PCDHA1,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHA10	+	FALSE	AluY	SINE,Alu
chr1	145688664	A	T	0.00087	NBPF20,NBPF10,RNF115	+	FALSE
chr5	130536847	A	G	0.00917	LYRM7	+	TRUE	AluSx4	SINE,Alu
chr1	1419690	A	G	0.00464	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr1	24296856	T	G	0.00564		.	FALSE	AluSg	SINE,Alu
chr1	178887208	A	T	0.00239	RALGPS2	+	FALSE
chr1	6283264	T	C	0.00284	ICMT	-	TRUE	AluSx3	SINE,Alu
chr7	129592510	G	T	0.00165	UBE2H	-	FALSE
chr2	31491075	A	G	0.00061	EHD3	+	FALSE
chr1	54692334	T	C	0.00021	SSBP3	-	FALSE	(T)n	SINE,Alu
chr22	21304408	A	G	0.00967	CRKL	+	FALSE
chr5	95222277	C	T	0.00599	ELL2	-	FALSE
chr2	242512159	A	G	0.00243	BOK	+	FALSE
chr3	181430334	G	A	0.00305	SOX2-OT,SOX2	+	FALSE
chr1	990984	G	A	0.00018	AGRN	+	FALSE
chr1	1683565	G	A	0.00552	NADK	-	FALSE
chr3	73116345	T	A	5.66390E-05	PPP4R2	+	FALSE
chr1	16889423	G	C	0.00459	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr1	120286837	A	G	0.00153	PHGDH	+	FALSE
chr6	151678865	T	G	0.00016	AKAP12	+	FALSE	(T)n	SINE,Alu
chr2	37478348	T	A	0.00392	PRKD3	-	FALSE
chr3	68685888	G	A	0.00280		.	FALSE
chr1	21810586	C	T	0.00540	NBPF3	+	FALSE
chr3	5257975	A	T	9.78592E-05	EDEM1	+	FALSE
chr1	1344893	A	G	7.94078E-08		.	FALSE	AluSg	SINE,Alu
chr3	58292300	C	T	0.00740	RPP14	+	FALSE
chr5	65120054	C	T	0.00625	NLN	+	FALSE
chr12	56510698	C	G	0.00944	RPL41	+	FALSE
chr2	174090635	T	A	0.00138	ZAK,MLK7-AS1	+,-	FALSE
chr1	28662057	A	G	3.94650E-05	MED18	+	TRUE	AluSq2	SINE,Alu
chr3	99517483	C	T	0.00070	MIR548G	-	FALSE	(TG)n	SINE,Alu
chr1	10520076	T	C	0.00075		.	FALSE	AluSx	SINE,Alu
chr6	75797290	T	A	0.00147	COL12A1	-	FALSE
chr1	120163247	T	C	0.00680	ZNF697	-	FALSE
chr2	208619590	A	G	0.00274	CCNYL1,MIR4775	+	TRUE	EutTc1-N2	SINE,Alu
chr1	28836900	A	G	0.00018	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr17	73885939	T	C	0.00612	TRIM65	-	TRUE	AluJr	SINE,Alu
chr1	110604747	G	A	0.00739	ALX3	-	FALSE
chr7	30544360	G	A	0.00170	GGCT	-	FALSE
chr1	32801694	A	C	0.00847	MARCKSL1	-	FALSE
chr2	178129405	C	T	0.00295	NFE2L2	-	FALSE	(CGG)n	SINE,Alu
chr3	107526182	T	C	7.17610E-07	BBX	+	FALSE
chr2	217366673	A	G	0.00517		.	FALSE	AluSz	SINE,Alu
chr1	36068369	T	C	0.00207	PSMB2	-	TRUE	AluSc	SINE,Alu
chr8	30536015	T	C	0.00286	GSR	-	TRUE	AluJr	SINE,Alu
chr1	32373858	A	T	0.00100	PTP4A2	-	FALSE
chr1	146250905	G	C	0.00444	NBPF20,NBPF10,NBPF25P	+	FALSE
chr19	9672919	T	C	0.00097		.	FALSE	AluSx3	SINE,Alu
chr15	93568295	G	A	0.00225	CHD2	+	FALSE
chr1	19441410	G	A	7.84348E-05	UBR4	-	FALSE
chr3	195963398	A	G	0.00271		.	FALSE
chr1	148556790	T	A	0.00728		.	FALSE
chr15	41591021	A	G	0.00427	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr1	36067784	T	C	0.00083	PSMB2	-	TRUE	AluSz	SINE,Alu
chr14	75202412	A	G	5.03546E-10	FCF1	+	TRUE	AluSc	SINE,Alu
chr1	33148196	A	G	0.00529	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr16	10623543	T	C	0.00025	EMP2	-	TRUE	AluSp	SINE,Alu
chr1	27205359	T	C	3.58613E-05		.	FALSE	AluSc	SINE,Alu
chr1	144596317	C	T	0.00020	NBPF20	+	FALSE	AluJb	SINE,Alu
chr3	63996230	A	T	0.00309	PSMD6-AS2,PSMD6	+,-	FALSE
chr1	22445725	C	G	0.00913	WNT4	-	FALSE
chr19	13054905	T	C	0.00324	CALR	+	FALSE	(T)n	SINE,Alu
chr2	3597974	T	C	1.93309E-05	RNASEH1	-	FALSE
chr5	134236311	A	T	0.00025	TXNDC15	+	FALSE	AluSq	SINE,Alu
chr1	28825331	A	G	0.00024	PHACTR4	+	TRUE	AluSg	SINE,Alu

RBP	TROVE2
Knock-Method	shRNA
RBP Family	TROVE
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR946OFN
Platform	HiSeq
Pubmed ID	32252787

TROVE2 - Target Gene Network