RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr3	157161198	A	T	0.00486	VEPH1,PTX3	+,-	FALSE
chr1	19543247	T	C	5.23836E-05	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr4	177251290	G	A	0.00580	SPCS3	+	FALSE
chr1	21101369	T	C	0.00244	HP1BP3	-	TRUE	AluSc	SINE,Alu
chr1	44171143	C	A	0.00118	KDM4A-AS1,KDM4A	+,-	FALSE
chr2	237035915	C	G	0.00348	AGAP1	+	FALSE
chr1	36067760	T	C	0.00768	PSMB2	-	TRUE	AluSz	SINE,Alu
chr2	217366197	T	A	0.00018		.	FALSE
chr19	19793709	A	G	0.00700	ZNF101	+	TRUE	AluSc8	SINE,Alu
chr1	203277243	G	T	1.60795E-05	BTG2	+	FALSE
chr3	98518155	A	T	0.00777	DCBLD2	-	FALSE
chr6	11185161	C	T	0.00297	NEDD9	-	FALSE
chr3	4403537	C	T	0.00055	SUMF1	-	FALSE	MIR3	SINE,Alu
chr1	16893813	A	G	0.00255	NBPF1	-	FALSE
chr5	6633042	C	T	0.00348	NSUN2	-	FALSE
chr1	201975173	G	T	0.00053	RNPEP	+	FALSE
chr1	237065326	C	T	0.00376	MTR	+	FALSE
chr1	179042905	A	G	0.00034	FAM20B	+	TRUE
chr1	31344952	C	T	0.00544	SDC3	-	FALSE
chr1	36388197	C	T	0.00315	AGO1	+	FALSE
chr1	118066459	A	G	0.00496	MAN1A2	+	FALSE
chr1	220970028	A	G	0.00444	MARC1	+	FALSE
chr1	120166681	G	A	0.00879	ZNF697	-	FALSE
chr3	196670090	G	A	6.78352E-09	NCBP2-AS2	+	FALSE
chr1	154554947	T	G	0.00511	ADAR	-	FALSE
chr1	92862804	A	G	0.00043		.	FALSE	AluJr	SINE,Alu
chr4	57326313	A	G	0.00132	PAICS	+	TRUE	AluJr	SINE,Alu
chr1	117618067	C	T	0.00118	TTF2	+	FALSE
chr1	9162206	T	C	0.00882		.	FALSE	AluSx	SINE,Alu
chr1	168220479	A	G	0.00113		.	FALSE	AluSz6	SINE,Alu
chr1	16933753	G	A	0.00609	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr2	31557839	G	T	0.00145	XDH	-	FALSE	AluJr	SINE,Alu
chr1	100654765	T	C	0.00254	DBT	-	TRUE	AluSz	SINE,Alu
chr2	26612465	G	A	0.00270	EPT1	+	FALSE
chr1	117617705	A	G	0.00081	TTF2	+	FALSE
chr1	43897496	G	A	0.00481	SZT2	+	FALSE
chr3	45722047	A	G	0.00085	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr5	149823789	G	T	0.00793		.	FALSE
chr14	23795219	C	T	0.00201	BCL2L2-PABPN1,PABPN1	+	FALSE
chr3	40578941	A	G	0.00293	ZNF621	+	TRUE	AluJr	SINE,Alu
chr2	32447868	A	G	0.00663	SLC30A6	+	FALSE
chr15	41590839	A	G	0.00344	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr1	52817434	T	C	0.00219	CC2D1B	-	TRUE	AluSg4	SINE,Alu
chr1	40213412	A	G	0.00235	PPIE	+	TRUE	AluSx3	SINE,Alu
chr5	115428334	G	T	0.00265	COMMD10	+	FALSE
chr2	217366919	A	G	0.00480		.	FALSE	AluSz6	SINE,Alu
chr1	6308456	G	A	0.00169	GPR153	-	FALSE
chr15	39887848	G	A	0.00664	THBS1	+	FALSE
chr1	176176230	G	A	0.00091	RFWD2	-	FALSE
chr1	25812110	T	C	0.00639	TMEM57	+	FALSE
chr1	53288916	A	G	0.00289	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr1	67874696	T	C	0.00098	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	11187199	G	T	0.00047	MTOR	-	FALSE
chr1	6583474	T	C	0.00438	NOL9	-	TRUE	AluSq	SINE,Alu
chr6	13790964	T	C	5.10728E-05	MCUR1	-	TRUE	AluSx1	SINE,Alu
chr1	145112414	T	C	0.00079	NBPF20,SEC22B	+	FALSE
chr1	227922767	G	T	0.00202	SNAP47,JMJD4	+,-	FALSE
chr1	145313405	C	T	0.00322	NBPF20,NBPF10	+	FALSE
chr1	145282799	G	A	0.00882	NBPF20,NOTCH2NL	+	FALSE
chr4	185397529	A	G	0.00116		.	FALSE	FRAM	SINE,Alu
chr2	85772407	T	A	0.00232	GGCX	-	FALSE
chr5	77655378	T	C	0.00555	SCAMP1-AS1	-	TRUE	AluSx4	SINE,Alu
chr7	138764145	T	C	0.00399	ZC3HAV1	-	FALSE
chr2	207174868	G	A	1.60070E-05	ZDBF2	+	FALSE
chr1	28150601	A	T	0.00382	STX12	+	FALSE
chr2	174090320	T	A	0.00174	ZAK,MLK7-AS1	+,-	FALSE	AluSx	SINE,Alu
chr4	25278988	T	C	2.09007E-08	PI4K2B	+	FALSE
chr8	8750467	A	G	0.00131	MFHAS1	-	FALSE
chr10	75008817	T	C	1.29877E-10	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr1	32799510	T	G	0.00048	MARCKSL1	-	FALSE
chr2	232574807	C	G	0.00134	PTMA	+	FALSE
chr4	187647832	C	G	0.00592		.	FALSE
chr3	57551513	A	G	0.00037	PDE12	+	TRUE	AluSc	SINE,Alu
chr1	19542679	T	C	0.00584	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr1	52520866	C	T	0.00108	TXNDC12	-	FALSE
chr1	53359745	A	G	0.00129	ZYG11A	+	TRUE	AluSx4	SINE,Alu
chr1	90470915	T	A	9.94810E-07	ZNF326	+	FALSE
chr4	663908	A	G	0.00320	PDE6B	+	FALSE
chr5	70503889	C	A	0.00131		.	FALSE
chr20	35409839	T	C	0.00556	SOGA1	-	TRUE	AluSx	SINE,Alu
chr2	209113192	G	A	0.00610	IDH1	-	FALSE
chr1	10521237	T	C	0.00348	DFFA	-	TRUE	AluY	SINE,Alu
chr21	33974094	C	T	0.00880	C21orf59	-	FALSE
chr11	126147697	G	A	0.00237	FOXRED1	+	FALSE
chr1	53289892	A	G	0.00178	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr15	91044380	G	C	0.00453	IQGAP1	+	FALSE
chr19	53914819	A	G	5.13713E-06	ZNF765	+	TRUE	AluSp	SINE,Alu
chr1	51873951	G	A	1.40484E-05	EPS15	-	FALSE
chr2	206983267	T	C	0.00133		.	FALSE	AluJb	SINE,Alu
chr1	16933642	G	A	0.00679	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr1	6283550	A	T	0.00225	ICMT	-	FALSE
chr6	57034842	T	G	0.00581	ZNF451,LOC101927211	+,-	FALSE
chr16	29454297	T	C	0.00104	SMG1P6,BOLA2-SMG1P6	-	TRUE	Tigger4a	SINE,Alu
chr2	37431604	A	G	0.00876	CEBPZOS,CEBPZ	+,-	FALSE	AluSc	SINE,Alu
chr3	72426059	T	A	0.00417	RYBP	-	FALSE
chr1	120612168	C	T	0.00607	NOTCH2	-	FALSE
chr1	109818161	C	T	6.45247E-05	CELSR2	+	FALSE
chr1	220231330	T	C	0.00427	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr3	100428460	G	C	5.60949E-08	TFG	+	FALSE
chr17	57279171	A	G	0.00063	PRR11	+	TRUE	AluSq2	SINE,Alu
chr17	3512398	T	C	0.00709	SHPK,TRPV1	-	TRUE	AluSx	SINE,Alu
chr1	31905906	T	A	0.00092	SERINC2	+	FALSE
chr1	16890630	T	G	0.00147	NBPF1	-	FALSE
chr2	204298783	A	C	0.00179	RAPH1	-	FALSE	(AT)n	SINE,Alu
chr1	28861636	G	A	0.00754	RCC1	+	FALSE	(GCATGT)n	SINE,Alu
chr1	10517314	T	C	0.00617		.	FALSE	AluJr	SINE,Alu
chr2	171608711	T	A	0.00492	LOC101926913	-	FALSE
chr2	206986245	T	C	0.00304		.	FALSE	AluSz	SINE,Alu
chr1	10520058	T	C	0.00907		.	FALSE	AluSx	SINE,Alu
chr8	95804469	A	G	0.00133	DPY19L4	+	TRUE	AluSq2	SINE,Alu
chr12	56510698	C	G	0.00944	RPL41	+	FALSE
chr2	198368112	G	A	0.00127	HSPE1,HSPE1-MOB4	+	FALSE
chr1	113212976	C	T	0.00043	CAPZA1	+	FALSE
chr1	154128839	G	T	0.00534	TPM3	-	FALSE
chr1	38327700	T	C	0.00509	INPP5B	-	TRUE	AluSx3	SINE,Alu
chr1	144595935	G	A	0.00636	NBPF20	+	FALSE	AluJb	SINE,Alu
chr1	204526648	A	G	0.00302	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	26128521	A	G	0.00251	SEPN1	+	TRUE	AluJb	SINE,Alu
chr8	22995145	T	C	3.53807E-06	TNFRSF10D	-	FALSE
chr1	23847464	C	A	0.00895	E2F2	-	FALSE
chr2	9629306	G	T	0.00255	ADAM17	-	FALSE
chr10	116603648	A	G	0.00267	FAM160B1	+	FALSE
chr4	3242223	G	A	0.00073	HTT	+	FALSE
chr1	147091972	C	T	8.17896E-06	BCL9	+	FALSE
chr1	11734730	C	T	7.77156E-16	MAD2L2	-	FALSE
chr1	46828460	C	T	0.00393	NSUN4	+	FALSE
chr1	36522460	A	G	0.00407		.	FALSE	AluSc	SINE,Alu
chr17	4928967	T	G	0.00921	KIF1C	+	FALSE	AluY	SINE,Alu
chr2	206858904	C	T	0.00783	INO80D	-	FALSE
chr5	150647719	T	C	0.00112	GM2A	+	FALSE	AluSc	SINE,Alu
chr10	13320236	C	T	0.00011	PHYH	-	FALSE
chr1	120163248	G	A	0.00204	ZNF697	-	FALSE
chr3	10192694	A	G	0.00277	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	10520684	T	C	0.00125	DFFA	-	TRUE	AluSc8	SINE,Alu
chr3	160286646	C	T	0.00086		.	FALSE
chr1	24798068	C	A	0.00686	NIPAL3	+	FALSE	AluJr	SINE,Alu
chr15	85185045	T	C	0.00210	WDR73,SCAND2P	+,-	FALSE	AluSz	SINE,Alu
chr1	121115958	T	C	0.00860	SRGAP2-AS1,SRGAP2D,SRGAP2B,SRGAP2C	+,-	FALSE
chr19	9673107	T	C	1.71894E-07		.	FALSE	AluSx3	SINE,Alu
chr7	100804140	C	T	0.00377	AP1S1	+	FALSE
chr1	9815354	T	G	0.00212	CLSTN1	-	FALSE
chr7	91742141	T	C	0.00100	CYP51A1	-	FALSE	AluSx3	SINE,Alu
chr20	25428587	A	G	0.00137	GINS1	+	TRUE	AluJb	SINE,Alu
chr1	87213174	T	G	0.00081	SH3GLB1	+	FALSE
chr6	31322980	C	T	0.00091		.	FALSE
chr2	27293349	C	T	0.00503	AGBL5,OST4	+,-	FALSE
chr6	150046495	T	C	0.00076	NUP43	-	TRUE	AluSq2	SINE,Alu
chr1	24295888	T	A	0.00240		.	FALSE
chr19	21366997	A	G	0.00727	ZNF431	+	TRUE	AluSc	SINE,Alu
chr1	117945040	G	A	0.00181	MAN1A2	+	FALSE
chr1	162494683	G	T	0.00269	UHMK1	+	FALSE	AluSg4	SINE,Alu
chr1	89271574	T	C	0.00074	PKN2	+	FALSE
chr2	128601583	T	C	0.00550		.	FALSE	AluJr	SINE,Alu
chr1	16384843	G	C	0.00049	FAM131C	-	FALSE
chr1	145284883	A	G	0.00062	NBPF20,NOTCH2NL	+	FALSE	L2a	SINE,Alu
chrX	123046329	A	G	0.00809	XIAP	+	FALSE	AluJb	SINE,Alu
chr1	45975740	C	G	0.00096	MMACHC	+	FALSE	AluSx4	SINE,Alu
chr2	50147865	T	A	0.00112	NRXN1	-	FALSE	(GT)n	SINE,Alu
chr8	30536152	T	C	0.00015	GSR	-	TRUE	AluJr	SINE,Alu
chr14	62213927	C	A	0.00771	HIF1A,HIF1A-AS2	+,-	FALSE
chr1	40213628	A	G	0.00058	PPIE	+	TRUE	FRAM	SINE,Alu
chr1	28865502	G	A	0.00073	RCC1	+	FALSE
chr2	91843471	C	T	0.00105	LOC654342	-	FALSE
chr1	160967856	T	C	0.00116	F11R	-	TRUE	AluSp	SINE,Alu
chr2	99812450	A	G	7.07141E-05	MRPL30	+	TRUE	AluSx	SINE,Alu
chrX	118673382	T	C	0.00021	CXorf56	-	TRUE	AluSz	SINE,Alu
chr1	203277253	A	G	0.00624	BTG2	+	FALSE
chr5	135388663	A	G	1.64165E-07	TGFBI	+	FALSE
chr2	242173247	G	A	0.00345	HDLBP	-	FALSE
chr1	6640640	T	G	0.00982	ZBTB48	+	FALSE
chr3	52567617	A	G	0.00025	NT5DC2	-	FALSE	G-rich	SINE,Alu
chr1	6283260	T	C	0.00402	ICMT	-	TRUE	AluSx3	SINE,Alu
chr2	3609064	G	A	0.00614	RNASEH1-AS1	+	FALSE	MER33	SINE,Alu
chr1	118170485	T	C	0.00281	FAM46C	+	FALSE	(TG)n	SINE,Alu
chr1	153591278	G	T	0.00119	S100A13	-	FALSE
chr1	2520435	G	C	0.00041	FAM213B	+	FALSE
chr1	6282401	T	C	1.82955E-05	ICMT	-	TRUE	AluSz	SINE,Alu
chr2	37429626	A	G	0.00028	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr5	130540369	C	A	0.00196	LYRM7	+	FALSE	Tigger4a	SINE,Alu
chr7	64435678	T	A	0.00256	ZNF117	-	FALSE
chr1	22855441	C	T	0.00884	ZBTB40	+	FALSE
chr1	155032752	A	G	0.00347	LOC100505666,ADAM15	+,-	FALSE
chr5	72801321	T	A	0.00427	BTF3	+	FALSE
chr1	16259813	A	G	0.00475	SPEN	+	FALSE
chr1	19543282	T	C	0.00228	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	109474776	A	G	0.00088	GPSM2,CLCC1	+,-	FALSE	AluSz	SINE,Alu
chr4	155457051	A	T	0.00378	PLRG1	-	FALSE	L2d2	SINE,Alu
chr1	204524457	A	G	6.02506E-06	MDM4	+	TRUE	AluY	SINE,Alu
chr1	28836912	A	G	3.63020E-05	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr1	28825827	A	G	0.00097	PHACTR4	+	TRUE	AluSp	SINE,Alu
chr2	172178588	T	C	0.00369	METTL8	-	TRUE	AluSx3	SINE,Alu
chr1	24086786	A	C	0.00812	TCEB3	+	FALSE
chr3	179116220	T	C	0.00233	GNB4	-	TRUE	AluSz6	SINE,Alu
chr2	128063523	G	C	0.00174	MAP3K2	-	FALSE
chr8	62626962	C	T	0.00823	ASPH	-	FALSE
chr1	47716043	A	G	0.00794	STIL	-	FALSE
chr2	100899665	G	A	0.00758	LONRF2	-	FALSE
chr1	114940228	C	T	0.00559	TRIM33	-	FALSE	(T)n	SINE,Alu
chr5	135515156	G	A	0.00364	SMAD5	+	FALSE
chr1	19542250	T	C	3.30618E-05	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr3	57549504	A	G	0.00384	PDE12	+	TRUE	AluJb	SINE,Alu
chr4	57801196	G	A	0.00485	REST	+	FALSE
chr1	61922501	A	C	0.00231	NFIA	+	FALSE	A-rich	SINE,Alu
chr1	213071445	G	A	0.00233	FLVCR1	+	FALSE	MIR3	SINE,Alu
chr1	145513112	A	G	0.00098	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	179876988	C	G	0.00047	TOR1AIP1	+	FALSE
chr1	39988084	G	A	0.00060	BMP8A,PPIEL	+,-	FALSE
chrX	71492446	A	T	0.00281		.	FALSE
chr1	145511993	A	G	0.00088	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	1593857	T	C	0.00424	CDK11B,SLC35E2B	-	FALSE
chr1	1662754	T	C	0.00856	SLC35E2	-	TRUE	AluY	SINE,Alu
chr16	88763958	G	A	7.55606E-05	RNF166	-	FALSE
chr4	128757345	A	G	0.00040		.	FALSE	AluY	SINE,Alu
chr6	132617374	C	G	0.00062	MOXD1	-	FALSE
chr1	10520130	T	C	0.00355		.	FALSE	AluSx	SINE,Alu
chr2	9629954	T	C	0.00802	ADAM17	-	FALSE
chr20	29631557	A	G	0.00159	FRG1BP	+	FALSE
chr3	15113655	T	C	0.00025	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	20945055	C	T	0.00269	CDA	+	FALSE
chr1	19542310	T	C	0.00873	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chrX	54587297	A	G	0.00759	GNL3L	+	TRUE	AluSq2	SINE,Alu
chr1	108742632	C	T	0.00933	SLC25A24	-	FALSE
chr1	148252049	A	C	0.00493	NBPF8,NBPF14,NBPF9	-	FALSE
chr1	118472401	C	T	0.00396	WDR3	+	FALSE
chr1	1650801	T	C	1.21097E-05	CDK11B,CDK11A	-	FALSE
chr1	109818159	G	T	0.00419	CELSR2	+	FALSE
chr4	42022464	C	A	0.00438	SLC30A9	+	FALSE
chr1	207219603	T	C	0.00341	YOD1	-	FALSE
chr3	197612267	A	G	0.00341		.	FALSE	AluSp	SINE,Alu
chr14	72041443	C	T	0.00842	SIPA1L1	+	FALSE
chr8	12880246	A	G	0.00012	KIAA1456	+	TRUE	AluJo	SINE,Alu
chr19	42731991	A	G	0.00598		.	FALSE	AluJr	SINE,Alu
chr1	110136328	T	A	0.00577	GNAI3	+	FALSE
chr1	1251841	T	C	0.00915	CPSF3L	-	TRUE	AluSq2	SINE,Alu
chr1	204521616	A	G	4.81420E-06	MDM4	+	TRUE	AluSg	SINE,Alu
chr1	28835937	A	G	0.00061	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr1	31346203	A	C	0.00050	SDC3	-	FALSE
chr6	79595097	A	G	0.00712	IRAK1BP1	+	FALSE
chr1	10517352	T	C	0.00064		.	FALSE	AluJr	SINE,Alu
chr1	62627128	A	G	2.94675E-05	PATJ	+	TRUE	AluSx	SINE,Alu
chr5	34906692	T	C	0.00021	RAD1	-	TRUE	AluJo	SINE,Alu
chr2	208619675	A	G	0.00012	CCNYL1	+	TRUE	AluJb	SINE,Alu
chr1	8045340	C	A	0.00285	PARK7	+	FALSE
chr1	153599390	T	C	0.00135	S100A13	-	FALSE
chr1	85484276	C	T	0.00168	MCOLN3	-	FALSE
chr3	152883475	A	T	0.00384	RAP2B	+	FALSE
chr1	186946912	G	A	0.00414	PLA2G4A	+	FALSE
chr1	44088547	C	A	0.00018	PTPRF	+	FALSE	A-rich	SINE,Alu
chr5	10435491	G	A	0.00606	MARCH6	+	FALSE
chr1	203713133	G	A	0.00984	ATP2B4	+	FALSE
chr1	12401868	A	C	0.00394	VPS13D	+	FALSE
chr1	144932151	G	T	0.00294	NBPF20,PDE4DIP	+,-	FALSE
chr1	207247475	C	A	0.00680	PFKFB2	+	FALSE	MER5B	SINE,Alu
chr19	21907988	C	T	0.00295	ZNF100	-	FALSE
chr1	85785548	C	T	0.00353	DDAH1	-	FALSE
chr1	19543457	T	C	0.00012	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr2	37327685	T	C	6.61966E-05		.	FALSE
chr1	206635244	T	A	0.00188	SRGAP2	+	FALSE
chr1	153917621	G	C	0.00020	DENND4B	-	FALSE
chr1	10044367	A	G	5.42058E-05	NMNAT1	+	TRUE	AluSx1	SINE,Alu
chr1	17299387	T	A	0.00941	CROCC	+	FALSE
chr4	56291751	A	C	0.00291	TMEM165	+	FALSE
chr1	115249239	G	A	1.76451E-06	NRAS	-	FALSE
chr6	74134804	T	C	0.00386		.	FALSE	AluSz	SINE,Alu
chr1	10517306	T	C	0.00022		.	FALSE	AluJr	SINE,Alu
chr1	28836973	A	G	0.00017	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu

RBP	EIF2S1
Knock-Method	shRNA
RBP Family	EIF_2_alpha
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR861ENA
Platform	HiSeq
Pubmed ID	32252787

EIF2S1 - Target Gene Network