Dataset Overview
RBP
QKI
Knock-Method
shRNA
RBP Family
KH_1
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR330YOU
Platform
HiSeq
Pubmed ID
32252787
QKI - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of QKI
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1BG
40.38
29.1
-0.73802
3.09513E-12
1.86934E-11
A1CF
29.02
32.62
-0.20911
0.00484
0.00899
A2M
2827.98
2266.14
-0.56299
2.17521E-13
1.44683E-12
AAAS
21.26
22.8
-0.18573
0.04302
0.06572
AACS
17.52
13.28
-0.68111
1.00134E-15
8.11290E-15
AADAC
0.87
0.68
-0.70655
0.02733
0.04355
AADAT
2.45
6.15
0.72571
9.16105E-07
3.01871E-06
AAGAB
4.83
7.94
0.58797
7.02115E-07
2.35037E-06
AAK1
1.2
3.25
1.66551
1.06139E-26
1.86206E-25
AAMDC
27.35
18.38
-0.81956
1.56358E-09
7.11902E-09
Showing 1 to 10 of 8,833 entries
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Function Analysis of Target Genes of QKI
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A1CF
52642377_52642465_52619601_52619745_52645340_52645387
0.00001
0.086
DataSet_01_109
View details
A1CF
52623792_52623840_52619601_52619745_52645340_52645435
0.00148
0.073
DataSet_01_109
View details
ABCC6
16256849_16257032_16255294_16255421_16259479_16259635
0.00002
0.517
DataSet_01_109
View details
ABCC6
16256849_16257049_16255294_16255421_16259479_16259635
0.00007
0.285
DataSet_01_109
View details
ABCD4
74759856_74759965_74759450_74759572_74761850_74761901
0.00807
0.39
DataSet_01_109
View details
ACAD11
132297798_132297900_132297676_132297725_132298335_132298402
0.00000
-0.239
DataSet_01_109
View details
ACAD11
132297872_132297900_132297676_132297725_132298335_132298402
0.00558
-0.145
DataSet_01_109
View details
ACSL3
223791734_223791960_223789173_223789313_223793579_223793654
0.00167
0.027
DataSet_01_109
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ACSL4
108928655_108928673_108926364_108926895_108939372_108939425
0.00000
0.018
DataSet_01_109
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ACSL4
108934231_108934360_108926364_108926601_108939372_108939425
0.00024
0.129
DataSet_01_109
View details
Showing 1 to 10 of 319 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A2M
9251202_9251352_9252061_9252119_9248134_9248296
0.00159
-0.362
DataSet_01_109
View details
A2M
9251202_9251352_9252061_9252080_9248134_9248296
0.00544
0.064
DataSet_01_109
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ACP1
272036_272150_275139_275201_271865_271939
0.00246
-0.09
DataSet_01_109
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ACSL4
108926364_108926601_108939372_108939425_108925947_108926125
0.00917
0.06
DataSet_01_109
View details
AFP
74306475_74306530_74309067_74309161_74303842_74304023
0.00000
-0.163
DataSet_01_109
View details
AFP
74309063_74309161_74313178_74313393_74308012_74308145
0.00000
-0.125
DataSet_01_109
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AFP
74306318_74306530_74313178_74313393_74303890_74304023
0.00005
-0.098
DataSet_01_109
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AFP
74306318_74306530_74318117_74318341_74303890_74304023
0.00091
-0.082
DataSet_01_109
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AFP
74309063_74309161_74313178_74313393_74303890_74304023
0.00554
-0.006
DataSet_01_109
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AHSG
186336285_186336426_186337645_186337729_186334975_186335139
0.00000
-0.009
DataSet_01_109
View details
Showing 1 to 10 of 126 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCC6P1
18584198_18584419_18584198_18584382_18585641_18585757
0.00306
0.382
DataSet_01_109
View details
AHSG
186334975_186335164_186334975_186335139_186337645_186337702
0.00147
0.507
DataSet_01_109
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CALD1
134617738_134618828_134617738_134618141_134625842_134625988
0.00667
0.069
DataSet_01_109
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CTNND1
57529268_57529591_57529268_57529518_57556508_57556627
0.00167
-0.114
DataSet_01_109
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DHRS2
24113617_24113763_24113617_24113704_24114035_24114091
0.00146
0.014
DataSet_01_109
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DHRS2
24113617_24113752_24113617_24113704_24114035_24114091
0.00235
0.009
DataSet_01_109
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EIF4G2
10823207_10823756_10823595_10823756_10822508_10822634
0.00001
0.134
DataSet_01_109
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ENPP3
131995301_131995550_131995301_131995421_131996219_131996329
0.00021
0.278
DataSet_01_109
View details
FCGRT
50015918_50016007_50015918_50015979_50016643_50016730
0.00698
-0.195
DataSet_01_109
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HINT3
126277926_126278324_126277926_126278034_126288032_126288150
0.00070
0.172
DataSet_01_109
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Showing 1 to 10 of 27 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AC040977.1
6915927_6916096_6915927_6916076_6916984_6917062
0.00986
0.045
DataSet_01_109
View details
AC040977.1
6915927_6916080_6915927_6916076_6916984_6917062
0.00634
0.04
DataSet_01_109
View details
ACSL4
108926364_108926895_108926364_108926601_108939372_108939425
0.00000
0.233
DataSet_01_109
View details
ACSL4
108926364_108926781_108926364_108926601_108939372_108939425
0.00000
0.231
DataSet_01_109
View details
ACTG1
79478928_79479168_79478928_79479141_79479257_79479386
0.00000
0.022
DataSet_01_109
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ARRDC3
90669500_90669693_90669500_90669655_90669930_90670093
0.00269
-0.097
DataSet_01_109
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ASGR2
7017492_7017706_7017492_7017629_7017933_7018161
0.00000
-0.121
DataSet_01_109
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ASGR2
7017435_7017717_7017435_7017629_7017933_7018161
0.00000
-0.263
DataSet_01_109
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C17orf76-AS1
16342894_16343567_16343498_16343567_16342640_16342728
0.00570
-0.041
DataSet_01_109
View details
CCDC125
68588014_68588189_68588014_68588174_68590619_68590727
0.00059
0.222
DataSet_01_109
View details
Showing 1 to 10 of 36 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACAD11
132297639_132298402_132297639_132297900_132298335_132298402
0.00599
0.208
DataSet_01_109
View details
ACSL5
114170220_114170463_114170220_114170253_114170341_114170463
0.00111
0.156
DataSet_01_109
View details
AKR1B1
134132049_134132813_134132049_134132133_134132731_134132813
0.00023
0.105
DataSet_01_109
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AKR1C1
5009118_5010578_5009118_5009235_5010500_5010578
0.00008
0.012
DataSet_01_109
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AKR1C2
5041391_5042858_5041391_5041469_5042741_5042858
0.00940
0.051
DataSet_01_109
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ATF4
39916568_39917676_39916568_39916756_39917358_39917676
0.00571
0.069
DataSet_01_109
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C17orf76-AS1
16342640_16343567_16342640_16343017_16343498_16343567
0.00022
0.066
DataSet_01_109
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CERS2
150939231_150939678_150939231_150939338_150939549_150939678
0.00015
0.053
DataSet_01_109
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COX4I1
85838542_85839470_85838542_85838710_85839338_85839470
0.00831
0.011
DataSet_01_109
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CYP21A2
32007322_32007749_32007322_32007424_32007541_32007749
0.00730
-0.048
DataSet_01_109
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
33149376
A
G
0.00424
SYNC,RBBP4
+,-
FALSE
AluSx1
SINE,Alu
chr1
3545194
C
G
0.00044
TPRG1L
+
FALSE
chr1
161930908
G
A
0.00664
ATF6
+
FALSE
chr1
9163334
T
C
0.00108
.
FALSE
AluSp
SINE,Alu
chr1
1344749
A
G
0.00307
.
FALSE
AluSx1
SINE,Alu
chr1
26608016
G
A
1.44245E-06
.
FALSE
chr1
87328401
A
T
0.00946
SEP15
-
FALSE
chr1
148558269
A
G
0.00538
NBPF15
+
FALSE
AluJb
SINE,Alu
chr1
145512073
A
G
0.00285
NBPF20,NBPF10,RBM8A,GNRHR2
+,-
FALSE
AluY
SINE,Alu
chr1
1597423
C
T
2.12697E-10
CDK11B,SLC35E2B
-
FALSE
Showing 1 to 10 of 456 entries
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression