RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	33148367	C	G	0.00020	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	11119950	G	A	4.66412E-05	SRM	-	FALSE
chr10	120795222	A	T	0.00193	EIF3A	-	FALSE
chr3	196670090	G	A	0.00059	NCBP2-AS2	+	FALSE
chr2	86251151	T	C	0.00763		.	FALSE	AluSx	SINE,Alu
chr1	9644558	A	G	0.00451		.	FALSE	AluSx	SINE,Alu
chr14	23795219	C	T	0.00201	BCL2L2-PABPN1,PABPN1	+	FALSE
chr1	204526795	A	G	0.00199	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	6614188	C	T	0.00906	NOL9	-	FALSE
chr12	1611791	C	G	0.00971	LINC00942	+	FALSE
chr1	36067677	T	C	5.01583E-07	PSMB2	-	TRUE	AluSz	SINE,Alu
chr3	88104073	G	C	0.00887	CGGBP1	-	FALSE
chr1	173864944	G	T	2.40127E-05		.	FALSE
chr2	128601583	T	C	0.00550		.	FALSE	AluJr	SINE,Alu
chr15	63356574	G	A	0.00845	TPM1	+	FALSE
chr1	117648345	A	G	0.00739		.	FALSE
chr1	209605646	A	C	0.00478	MIR205HG	+	FALSE	(AGC)n	SINE,Alu
chr1	19543352	T	C	0.00715	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	10519048	T	C	0.00089		.	FALSE	AluSx3	SINE,Alu
chr21	40567668	G	A	0.00559	BRWD1	-	FALSE
chr2	26477130	T	C	0.00501	HADHB	+	FALSE
chr5	139931632	C	G	0.00052	SRA1	-	FALSE
chr1	3545186	T	G	0.00314	TPRG1L	+	FALSE
chr1	204521590	A	G	1.33621E-05	MDM4	+	TRUE	AluSg	SINE,Alu
chr6	90346418	A	T	1.30335E-05	LYRM2	-	FALSE	AluSz	SINE,Alu
chr22	39259534	A	G	0.00371	CBX6	-	FALSE
chr1	46032974	T	C	0.00196	AKR1A1	+	FALSE
chr1	20978294	T	A	0.00985	PINK1-AS,DDOST	-	FALSE
chr2	1652354	G	A	0.00000	PXDN	-	FALSE
chr2	120439459	C	A	0.00273	TMEM177	+	FALSE
chr2	36776054	C	T	0.00028	CRIM1	+	FALSE
chr1	36386884	C	T	0.00375	AGO1	+	FALSE
chr17	73940918	T	C	6.48265E-05	ACOX1	-	TRUE	AluSx1	SINE,Alu
chr21	33974088	A	G	0.00057	C21orf59	-	FALSE
chr16	29454288	T	C	9.60363E-06	SMG1P6,BOLA2-SMG1P6	-	FALSE	Tigger4a	SINE,Alu
chr6	44417136	A	G	0.00644	CDC5L	+	TRUE	FLAM_C	SINE,Alu
chr8	41798912	T	C	0.00892	KAT6A	-	FALSE
chr1	31732677	G	A	0.00353	SNRNP40	-	FALSE	A-rich	SINE,Alu
chr1	26158906	C	A	0.00362	MTFR1L,AUNIP	+,-	FALSE
chr15	74319121	A	G	0.00311	PML	+	TRUE	AluSz6	SINE,Alu
chr5	81571877	C	T	0.00250	RPS23	-	FALSE
chr1	16893691	C	A	0.00764	NBPF1	-	FALSE
chr8	56985608	A	T	0.00077	RPS20	-	FALSE
chr1	16112795	A	G	4.56234E-06	FBLIM1	+	FALSE
chr8	17089564	T	C	0.00165	CNOT7	-	FALSE
chr2	187544230	T	A	0.00930	ITGAV	+	FALSE
chr1	46828653	T	A	0.00920	NSUN4	+	FALSE
chr1	990984	G	A	0.00787	AGRN	+	FALSE
chr1	145509569	A	G	0.00405	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr1	36644564	C	T	1.56500E-06	MAP7D1	+	FALSE
chr7	154796171	G	A	0.00066	PAXIP1-AS1	+	FALSE	AluSx3	SINE,Alu
chr5	140720886	A	G	0.00980	PCDHGA1,PCDHGA2	+	FALSE
chr2	20450819	T	C	0.00807	PUM2	-	TRUE
chr2	183643905	A	T	0.00841	DNAJC10	+	FALSE
chr1	184762676	T	C	0.00548	FAM129A	-	TRUE	AluSz	SINE,Alu
chr1	6282420	T	C	0.00133	ICMT	-	TRUE	AluSz	SINE,Alu
chr7	16640491	G	A	0.00478	ANKMY2	-	FALSE
chr1	156565049	A	C	0.00169	GPATCH4	-	FALSE
chr1	6283296	T	C	0.00106	ICMT	-	TRUE	AluSx3	SINE,Alu
chr8	144940368	C	T	0.00020	EPPK1	-	FALSE
chr2	86731290	T	C	0.00149	CHMP3,RNF103-CHMP3	-	FALSE	L1MC1	SINE,Alu
chr5	96429362	A	T	0.00907	LIX1	-	FALSE
chr1	145284132	G	A	0.00338	NBPF20,NOTCH2NL	+	FALSE	(TG)n	SINE,Alu
chr1	1459332	G	A	1.33172E-08	ATAD3A	+	FALSE
chr3	178978532	T	C	0.00061	KCNMB3	-	FALSE
chr8	11666384	C	T	0.00029	FDFT1	+	FALSE
chr4	55147769	C	T	0.00079	PDGFRA	+	FALSE
chr10	79793877	C	T	0.00977	RPS24	+	FALSE
chr3	9934605	T	C	3.00360E-07	JAGN1	+	FALSE
chrX	123045103	A	G	0.00996	XIAP	+	TRUE	AluSp	SINE,Alu
chr12	133298355	A	G	0.00024	PGAM5	+	TRUE	AluSp	SINE,Alu
chr1	41972561	T	C	0.00606	HIVEP3	-	FALSE	(T)n	SINE,Alu
chr7	20178434	T	C	0.00178	MACC1,LOC101927668	-	TRUE	AluY	SINE,Alu
chr2	152976703	T	A	0.00217	STAM2	-	FALSE
chr6	43747964	G	A	0.00542	VEGFA	+	FALSE
chr4	47514685	C	T	2.65771E-05	ATP10D	+	FALSE
chr9	89627066	A	G	0.00588	LOC440173	-	FALSE
chr7	2290637	C	T	0.00956	NUDT1	+	FALSE
chr12	133298917	A	G	0.00612	PGAM5	+	TRUE	AluSg	SINE,Alu
chr1	19984346	A	G	0.00071	MINOS1-NBL1,NBL1	+	FALSE
chr2	86364709	G	T	0.00237	PTCD3	+	FALSE
chr1	87573331	T	C	0.00699	HS2ST1	+	FALSE	(AT)n	SINE,Alu
chr2	37330587	T	C	0.00112		.	FALSE	AluSq2	SINE,Alu
chr1	53288870	A	G	0.00184	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr7	6505901	T	C	1.53488E-09	KDELR2	-	FALSE
chr1	16061035	G	C	0.00089	PLEKHM2	+	FALSE
chrX	16782911	A	G	0.00051		.	FALSE	AluJb	SINE,Alu
chr3	156258283	T	C	0.00686	SSR3	-	TRUE	AluYk3	SINE,Alu
chr9	131071425	A	T	0.00068	TRUB2	-	FALSE
chr7	36447346	G	A	0.00419	ANLN	+	FALSE
chr2	208619675	A	G	0.00012	CCNYL1	+	TRUE	AluJb	SINE,Alu
chr1	244572644	G	C	0.00088	ADSS	-	FALSE
chr1	119574537	G	A	0.00935	WARS2	-	FALSE
chr1	203771852	G	T	0.00883	ZC3H11A	+	FALSE	(T)n	SINE,Alu
chr1	153782688	G	T	0.00032	GATAD2B	-	FALSE
chr2	189877305	T	C	0.00612	COL3A1	+	FALSE
chr5	17276055	T	C	0.00784	BASP1	+	FALSE	(TC)n	SINE,Alu
chr7	100031497	T	G	0.00119	MEPCE	+	FALSE
chr1	19542310	T	C	0.00112	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	145322843	C	T	0.00428	NBPF20,NBPF10	+	FALSE
chr17	65334846	T	C	0.00456	PSMD12	-	FALSE	AluSq	SINE,Alu
chr1	93297607	C	T	0.00016	RPL5	+	FALSE
chr1	9160900	T	C	0.00628		.	FALSE	AluJb	SINE,Alu
chr1	6283558	A	T	0.00624	ICMT	-	FALSE
chr2	128951766	A	G	0.00050	UGGT1	+	TRUE	AluSp	SINE,Alu
chr16	10623544	T	C	2.29348E-06	EMP2	-	TRUE	AluSp	SINE,Alu
chr2	131104524	G	A	0.00912	IMP4	+	FALSE	L1MA9	SINE,Alu
chr17	28513176	G	A	0.00996	NSRP1	+	FALSE	AluJr	SINE,Alu
chr3	156258230	T	C	0.00176	SSR3	-	TRUE	AluYk3	SINE,Alu
chr1	19542464	T	C	0.00736	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr2	202031356	C	T	0.00247	CFLAR	+	FALSE	SVA_A	SINE,Alu
chr1	68167935	A	G	0.00390	GNG12	-	FALSE
chr1	28661767	A	G	0.00242	MED18	+	TRUE	AluSg	SINE,Alu
chr1	26900708	G	A	0.00349	RPS6KA1	+	FALSE
chr1	1255402	C	G	0.00785	CPSF3L	-	FALSE	(GCAGG)n	SINE,Alu
chr1	168220479	A	G	0.00113		.	FALSE	AluSz6	SINE,Alu
chr1	10520331	C	T	0.00816		.	FALSE	AluSx1	SINE,Alu
chr16	22296860	A	G	0.00041	EEF2K	+	TRUE	AluJo	SINE,Alu
chr1	184762524	T	C	0.00471	FAM129A	-	TRUE	AluSz	SINE,Alu
chr1	16889566	T	C	0.00305	NBPF1	-	TRUE
chr2	206982255	T	C	0.00431		.	FALSE	AluSg7	SINE,Alu
chr1	19934839	A	G	0.00052	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr13	76378459	T	C	0.00239	LMO7	+	FALSE
chr3	126755556	C	T	0.00303	PLXNA1	+	FALSE
chr3	196079280	T	C	0.00614		.	FALSE	AluSx	SINE,Alu
chr1	31837516	G	C	5.10721E-05	ZCCHC17	+	FALSE
chr1	33071096	A	G	0.00692	ZBTB8A	+	TRUE	AluSx1	SINE,Alu
chr10	101992793	T	C	0.00407	CWF19L1	-	TRUE	AluJb	SINE,Alu
chr1	46828700	A	G	0.00012	NSUN4	+	FALSE
chr1	54636689	A	G	0.00268		.	FALSE
chr20	25428348	A	G	0.00121	GINS1	+	TRUE	AluSz	SINE,Alu
chr2	191067763	A	T	0.00038	C2orf88	+	FALSE
chr4	185309405	A	G	0.00035	IRF2	-	FALSE
chr12	100556267	T	C	0.00071	GOLGA2P5	-	FALSE
chr1	28661657	A	G	0.00910	MED18	+	TRUE	AluSg	SINE,Alu
chr2	31611143	C	T	0.00117	XDH	-	FALSE
chr2	96918126	G	T	0.00821	TMEM127	-	FALSE
chr8	48890109	A	G	0.00750	MCM4	+	TRUE	AluJb	SINE,Alu
chr2	202029999	T	G	0.00350	CFLAR	+	FALSE	(TTA)n	SINE,Alu
chr3	88191444	A	C	0.00020	CGGBP1,ZNF654	+,-	FALSE
chr1	27205634	T	C	0.00025		.	FALSE	FLAM_A	SINE,Alu
chr5	41917695	C	T	0.00019	C5orf51	+	FALSE
chr2	37429677	A	G	0.00279	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr3	37368755	T	A	9.43816E-08	GOLGA4	+	FALSE
chr1	117532790	C	T	0.00981	PTGFRN	+	FALSE
chr10	75009579	T	C	3.24788E-05	DNAJC9-AS1,MRPS16	+,-	FALSE	AluSc	SINE,Alu
chr1	153585584	G	A	0.00011	S100A16	-	FALSE
chr3	44790772	T	C	0.00024	KIAA1143	-	TRUE	AluY	SINE,Alu
chr16	10625102	T	C	0.00129	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	10519787	A	T	0.00037		.	FALSE	(A)n	SINE,Alu
chr1	9161179	T	C	0.00570		.	FALSE	AluSx	SINE,Alu
chr2	37331627	T	C	0.00030		.	FALSE	AluJb	SINE,Alu
chr3	40503561	A	T	0.00012	RPL14	+	FALSE
chr6	42857542	T	A	0.00029	RPL7L1	+	FALSE	MIRc	SINE,Alu
chr3	42610374	A	G	0.00594	SEC22C	-	FALSE
chr2	65496187	G	A	0.00266	ACTR2	+	FALSE
chr12	53435277	G	T	2.75857E-05	EIF4B	+	FALSE
chr1	24295888	T	A	0.00240		.	FALSE
chr2	47130527	G	A	0.00462	MCFD2	-	FALSE
chr16	10625058	T	C	2.66942E-12	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	17199803	C	T	0.00997	LOC440570	+	FALSE
chr1	16958047	C	T	0.00193		.	FALSE
chr6	114182271	G	A	0.00011	MARCKS	+	FALSE
chr4	120979190	T	C	0.00970		.	FALSE	AluSg4	SINE,Alu
chr1	36067752	T	C	0.00075	PSMB2	-	TRUE	AluSz	SINE,Alu
chr2	232574807	C	G	0.00134	PTMA	+	FALSE
chr1	54691921	G	A	0.00032	SSBP3	-	FALSE
chr10	101992425	T	C	0.00406	CWF19L1	-	TRUE	AluSq2	SINE,Alu
chr4	89181451	T	C	8.32748E-05	PPM1K	-	TRUE	AluSx1	SINE,Alu
chr1	38155699	T	G	0.00734	C1orf109	-	FALSE	AluSx1	SINE,Alu
chr5	79923843	T	C	0.00229	DHFR	-	TRUE	AluSp	SINE,Alu
chr2	37331750	T	C	1.79348E-08		.	FALSE	AluJb	SINE,Alu
chr6	143382534	C	T	0.00252	AIG1	+	FALSE
chr6	79595097	A	G	0.00712	IRAK1BP1	+	FALSE
chr9	137330714	A	C	0.00030	RXRA	+	FALSE
chr1	10519982	T	C	6.11297E-05		.	FALSE	AluJr	SINE,Alu
chr6	116600774	C	G	0.00180	DSE,TSPYL1	+,-	FALSE
chr16	75479331	T	C	0.00725	TMEM170A	-	TRUE	AluJb	SINE,Alu
chr1	144931392	G	A	0.00172	NBPF20,PDE4DIP	+,-	FALSE
chr1	569492	T	C	0.00743		.	FALSE
chr1	19201928	C	T	0.00149	ALDH4A1	-	FALSE
chr6	52442880	G	T	5.05556E-08	TRAM2-AS1	+	FALSE
chr15	38780594	C	T	0.00135	RASGRP1	-	FALSE
chr4	17802772	G	T	0.00328	DCAF16	-	FALSE	AluSz	SINE,Alu
chr1	184761350	T	C	0.00754	FAM129A	-	TRUE	AluJo	SINE,Alu
chr1	10518831	T	C	0.00410		.	FALSE	AluSx1	SINE,Alu
chr1	109746728	A	G	0.00171	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr5	149363414	A	G	0.00458	SLC26A2	+	TRUE	AluJr	SINE,Alu
chr1	168220489	A	G	0.00525		.	FALSE	AluSz6	SINE,Alu
chr3	48787633	T	C	0.00314	PRKAR2A	-	TRUE	AluSp	SINE,Alu
chr16	89623607	A	G	0.00915	SPG7	+	FALSE
chr1	52375424	T	C	0.00109	RAB3B	-	FALSE
chr1	40705200	G	A	3.20116E-08	RLF	+	FALSE
chr2	55516902	G	A	0.00011	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr1	38327584	T	C	0.00017	INPP5B	-	TRUE	AluSx3	SINE,Alu
chr1	145281543	C	T	0.00028	NBPF20,NOTCH2NL	+	FALSE
chr1	36024788	C	T	2.88658E-15	NCDN	+	FALSE
chr1	52253845	T	C	0.00889	OSBPL9	+	FALSE	(AT)n	SINE,Alu
chr7	99055940	T	C	0.00289	ATP5J2-PTCD1,ATP5J2	-	FALSE
chr2	37328016	T	C	5.08368E-07		.	FALSE
chr1	144932197	T	A	0.00430	NBPF20,PDE4DIP	+,-	FALSE
chr1	1361641	C	T	0.00928	TMEM88B	+	FALSE
chr1	33148736	A	G	0.00849	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr5	135388663	A	G	1.64165E-07	TGFBI	+	FALSE
chr3	100084203	C	G	0.00484	TOMM70	-	FALSE
chr1	64095111	A	G	0.00201	PGM1	+	FALSE
chr2	9558812	G	T	0.00427	ITGB1BP1	-	FALSE
chr1	53359745	A	G	0.00661	ZYG11A	+	TRUE	AluSx4	SINE,Alu
chr12	90914	C	T	0.00539	LOC100288778	+	FALSE
chr2	203430456	T	G	0.00162	BMPR2	+	FALSE
chr1	10518052	T	C	7.90759E-05		.	FALSE	AluJr	SINE,Alu
chr2	206987738	T	C	0.00322		.	FALSE	AluJb	SINE,Alu
chr1	89299658	G	A	0.00779	PKN2	+	FALSE
chr1	33149495	A	G	0.00675	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr3	15114492	T	C	0.00073	RBSN	-	TRUE	AluY	SINE,Alu
chr2	217366197	T	A	0.00018		.	FALSE
chr5	9549459	A	G	0.00783	SNHG18	+	FALSE
chr7	920724	A	G	0.00328	GET4	+	TRUE	AluSx1	SINE,Alu
chr6	24720533	C	G	0.00023		.	FALSE
chr3	45267310	C	T	0.00038	TMEM158	-	FALSE
chr1	145689843	A	G	4.95254E-05	NBPF20,NBPF10	+	TRUE	AluJb	SINE,Alu
chr1	201488170	A	G	0.00997		.	FALSE	AluSz	SINE,Alu
chr3	66430375	T	A	0.00091	LRIG1	-	FALSE
chr10	114209912	A	G	0.00060	VTI1A	+	TRUE	AluSx3	SINE,Alu
chr1	1594835	C	G	0.00195	CDK11B,SLC35E2B	-	FALSE
chr16	71765443	C	T	0.00223	AP1G1	-	FALSE
chr1	36067749	T	C	0.00748	PSMB2	-	TRUE	AluSz	SINE,Alu
chr16	81744038	T	C	6.34278E-05	CMIP	+	FALSE	(CCGC)n	SINE,Alu
chr3	40353791	A	T	0.00419	EIF1B	+	FALSE
chr1	207247475	C	A	0.00680	PFKFB2	+	FALSE	MER5B	SINE,Alu
chr4	7761211	C	T	8.70555E-11	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	10044367	A	G	5.42058E-05	NMNAT1	+	TRUE	AluSx1	SINE,Alu
chr1	44818528	T	G	0.00486	ERI3	-	FALSE
chr2	201253956	A	G	0.00071	SPATS2L	+	FALSE
chr14	21929044	T	C	3.48024E-06	RAB2B	-	TRUE	AluSp	SINE,Alu
chr12	125512540	A	G	7.43833E-09		.	FALSE
chr1	1647871	T	C	7.46571E-06	CDK11B,CDK11A	-	FALSE
chr1	201434740	G	A	0.00471	PHLDA3	-	FALSE
chr4	109733172	T	C	0.00480	COL25A1	-	FALSE
chr12	106460001	G	A	2.23324E-05	NUAK1	-	FALSE
chr1	94335191	C	T	0.00382	DNTTIP2	-	FALSE
chr12	25360465	G	A	0.00074	KRAS	-	FALSE
chr1	33148216	A	G	0.00824	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	9161245	T	C	0.00480		.	FALSE	AluSx	SINE,Alu
chr1	6283348	T	C	0.00082	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	32799437	C	T	0.00318	MARCKSL1	-	FALSE
chr14	75202645	A	G	3.73418E-05	FCF1	+	TRUE	AluSc	SINE,Alu
chr1	10517992	T	C	0.00417		.	FALSE	AluJr	SINE,Alu
chr1	36770065	C	T	0.00131	THRAP3	+	FALSE	(T)n	SINE,Alu
chr1	16945027	T	C	0.00483	CROCCP2	-	FALSE	L1ME3Cz	SINE,Alu
chr1	24128467	C	T	0.00086	HMGCL	-	FALSE
chr2	183817957	T	A	0.00031	NCKAP1	-	FALSE
chr1	220231946	T	C	0.00439	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr1	173862270	G	C	0.00197		.	FALSE	AluSz6	SINE,Alu
chr1	94343023	A	G	0.00363	DNTTIP2	-	FALSE
chr22	38881699	A	T	0.00802	DDX17	-	FALSE	(TA)n	SINE,Alu
chr1	46093396	G	A	0.00048	GPBP1L1	-	FALSE	A-rich	SINE,Alu
chr1	204525548	A	G	0.00027	MDM4	+	TRUE	AluSz	SINE,Alu
chr1	44088556	C	A	0.00260	PTPRF	+	FALSE	A-rich	SINE,Alu
chr2	37328082	T	C	0.00243		.	FALSE
chr1	16891379	C	T	0.00074	NBPF1	-	FALSE
chr8	30536603	T	C	9.61612E-06	GSR	-	TRUE	AluSp	SINE,Alu
chr1	150969257	T	C	0.00400		.	FALSE	AluSq2	SINE,Alu
chr1	144821900	C	G	6.24876E-05	NBPF20,NBPF9	+	FALSE
chr1	35648711	A	C	0.00377	SFPQ	-	FALSE
chr1	148252049	A	C	0.00666	NBPF8,NBPF14,NBPF9	-	FALSE
chr3	15112630	C	T	0.00017	RBSN	-	FALSE	AluSq2	SINE,Alu
chr2	224844864	A	G	7.12020E-05	SERPINE2	-	FALSE	L2b	SINE,Alu
chr1	6283306	T	C	0.00047	ICMT	-	TRUE	AluSx3	SINE,Alu
chr3	160791358	C	T	0.00018	PPM1L	+	FALSE
chr1	1647871	T	C	0.00906	CDK11B,CDK11A	-	FALSE
chr1	201846632	C	T	7.46598E-05	IPO9	+	FALSE	(CA)n	SINE,Alu
chr4	154257511	C	A	0.00093	TRIM2	+	FALSE	(A)n	SINE,Alu
chr1	16890176	A	C	0.00753	NBPF1	-	FALSE
chr15	23313171	A	G	0.00257	HERC2P2	-	FALSE
chr12	56510696	A	T	0.00767	RPL41	+	FALSE
chr7	937828	G	A	0.00605	ADAP1	-	FALSE
chr17	74560725	T	C	0.00476	SNHG16	+	FALSE	THE1B	SINE,Alu
chr2	206982358	T	C	0.00080		.	FALSE	AluSg7	SINE,Alu
chr7	38764358	T	C	0.00675	VPS41	-	TRUE	AluSp	SINE,Alu
chr5	114951140	T	G	0.00761	TMED7-TICAM2,LOC101927100,TMED7	+,-	FALSE
chr1	145509570	A	G	0.00043	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr1	33148623	A	G	4.79591E-07	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr4	88293887	G	A	0.00548	HSD17B11	-	FALSE
chr3	69154343	C	G	0.00408	ARL6IP5	+	FALSE
chr7	131188652	G	C	0.00684	PODXL	-	FALSE	MIR3	SINE,Alu
chr10	120801786	G	C	0.00752	EIF3A	-	FALSE
chr2	24223265	A	G	0.00417	UBXN2A	+	TRUE	AluSc	SINE,Alu
chr2	47137976	T	C	0.00398	MCFD2	-	TRUE	AluJr	SINE,Alu
chr1	19542310	T	C	0.00581	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	569983	G	A	0.00076		.	FALSE
chr16	2821989	C	T	0.00709	TCEB2	-	FALSE
chr7	149318375	C	T	0.00383	ZNF767P	-	FALSE
chr1	171561203	T	G	0.00075	PRRC2C	+	FALSE
chr1	65899366	A	C	0.00593	LEPR,LEPROT	+	FALSE
chr1	900720	A	T	0.00065	KLHL17	+	FALSE	(TTTA)n	SINE,Alu
chr10	53456599	A	G	0.00339	PRKG1,CSTF2T	+,-	FALSE
chr1	27678721	A	G	0.00030	SYTL1	+	TRUE	AluSx1	SINE,Alu
chr1	161930908	G	A	0.00664	ATF6	+	FALSE
chr5	180682610	T	C	0.00014	CTC-338M12.4	+	FALSE
chr3	45266555	T	C	1.22536E-07	TMEM158	-	FALSE
chr2	183643905	A	T	0.00113	DNAJC10	+	FALSE
chr5	149829076	G	C	0.00288	RPS14	-	FALSE
chr2	69688897	T	C	0.00888	AAK1	-	TRUE	AluSq2	SINE,Alu
chr1	100316589	A	G	0.00147	AGL	+	FALSE
chr1	59127086	G	A	0.00051	MYSM1	-	FALSE
chr1	55062960	G	A	0.00542	ACOT11	+	FALSE
chr12	98943102	A	G	0.00250	TMPO	+	TRUE	AluSz	SINE,Alu
chr1	36806071	G	A	0.00126	STK40	-	FALSE
chr1	9162223	T	C	0.00778		.	FALSE	AluSx	SINE,Alu
chr19	13883548	A	G	0.00566	MRI1	+	TRUE	AluYk3	SINE,Alu
chr19	11256725	T	C	0.00096	SPC24	-	TRUE	AluJr4	SINE,Alu
chr3	169492101	C	T	0.00402	MYNN	+	FALSE
chr1	52817434	T	C	0.00799	CC2D1B	-	TRUE	AluSg4	SINE,Alu
chr6	42856959	A	G	6.63353E-07	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr19	41097276	C	G	0.00188	SHKBP1	+	FALSE
chr1	220231347	T	C	0.00963	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr1	16932144	A	C	0.00559	NBPF1	-	FALSE
chr5	175802154	C	T	0.00883		.	FALSE	(CATC)n	SINE,Alu
chr14	50053350	T	A	0.00071		.	FALSE	7SLRNA	SINE,Alu
chr8	30643553	A	G	0.00968	PPP2CB	-	FALSE
chr5	68788642	G	C	3.71778E-05	OCLN	+	FALSE
chr1	6583515	T	C	0.00528	NOL9	-	TRUE	AluSq	SINE,Alu
chr2	232319529	T	A	1.32288E-06	NCL	-	FALSE
chr8	140475147	C	T	0.00719		.	FALSE
chr1	33147722	G	A	1.17176E-11	SYNC,RBBP4	+,-	FALSE
chr4	152020779	G	T	0.00925	RPS3A	+	FALSE
chr3	39453610	C	T	0.00025	RPSA	+	FALSE
chr1	145375858	T	C	0.00069	NBPF20,NBPF10	+	FALSE
chr10	79552107	G	A	0.00092	DLG5	-	FALSE
chr2	75118737	C	T	0.00154	HK2	+	FALSE
chr3	179506721	G	C	0.00018	USP13	+	FALSE
chr6	33281842	G	T	0.00514		.	FALSE
chr19	39220786	C	A	0.00303	ACTN4	+	FALSE	A-rich	SINE,Alu
chr17	79780692	T	C	0.00116	MCRIP1	-	TRUE
chr3	9517369	C	T	0.00395	SETD5	+	FALSE
chr1	567557	A	G	0.00649		.	FALSE
chr3	5026729	C	T	0.00539	BHLHE40	+	FALSE
chr1	24086794	G	T	0.00309	TCEB3	+	FALSE	(T)n	SINE,Alu
chr1	33148214	A	G	0.00295	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr4	128756579	A	G	0.00501		.	FALSE	AluSx	SINE,Alu
chr17	263417	C	T	0.00675	LOC105371430,C17orf97	+,-	FALSE
chr3	195961254	C	T	0.00119		.	FALSE
chr1	79003523	C	G	0.00036	PTGFR	+	FALSE
chr1	161559466	C	A	0.00491	FCGR2C	+	FALSE
chr1	204189357	C	T	0.00835	PLEKHA6	-	FALSE
chr1	246829742	T	C	0.00960	CNST	+	FALSE	(TGTG)n	SINE,Alu
chr1	10520145	T	C	0.00424		.	FALSE	AluSx	SINE,Alu
chr1	46075664	A	G	0.00267	NASP	+	TRUE	AluSx4	SINE,Alu
chr13	28240417	C	G	6.17934E-05	POLR1D	+	FALSE
chr1	40147817	C	A	0.00982	HPCAL4	-	FALSE
chr1	13942884	A	C	0.00016	PDPN	+	FALSE
chr2	99812876	A	G	0.00394	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	44447004	G	A	0.00767	B4GALT2	+	FALSE	(CAG)n	SINE,Alu
chr1	150597527	T	C	0.00058	ENSA	-	FALSE
chr2	132481245	T	G	0.00382	C2orf27A	+	FALSE
chr1	26603883	G	A	0.00088	CEP85	+	FALSE
chr3	133307637	G	T	0.00092	CDV3	+	FALSE
chr1	6283332	T	C	6.58989E-06	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	28826130	A	G	0.00207	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	109475629	A	G	0.00835	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr1	151095753	A	G	0.00256	GABPB2	+	TRUE	AluSz	SINE,Alu
chr1	144595935	G	A	0.00860	NBPF20	+	FALSE	AluJb	SINE,Alu
chr7	44841933	A	G	0.00192	PPIA	+	TRUE	AluSx	SINE,Alu
chr6	160101723	T	C	0.00234	SOD2	-	TRUE	AluSz	SINE,Alu
chr3	45722253	A	G	0.00670	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr3	58306686	A	G	0.00970		.	FALSE	AluSz	SINE,Alu
chr3	10191943	G	A	2.29886E-07	VHL	+	FALSE
chr2	206983075	T	C	0.00083		.	FALSE	AluJb	SINE,Alu
chr1	180144485	G	A	0.00665	QSOX1	+	FALSE
chr19	13884084	A	G	0.00843	MRI1	+	TRUE	AluSz	SINE,Alu
chr3	100084432	G	A	0.00321	TOMM70	-	FALSE
chr2	143638992	T	A	0.00089	KYNU	+	FALSE
chr3	191110544	T	G	0.00031	CCDC50	+	FALSE	AluSz	SINE,Alu
chr1	23636274	G	T	0.00165	HNRNPR	-	FALSE
chr2	70506337	T	C	0.00313	PCYOX1	+	FALSE
chr15	90819444	A	G	5.90002E-05		.	FALSE	AluSx	SINE,Alu
chr2	234775941	A	G	0.00161	MSL3P1	-	FALSE
chr14	74526945	T	C	2.53258E-07	BBOF1,ALDH6A1	+,-	FALSE	AluJo	SINE,Alu
chr15	41597559	A	G	0.00127		.	FALSE	AluSz6	SINE,Alu
chr3	194999352	A	T	0.00482	ACAP2	-	FALSE
chr1	47142538	G	A	7.23026E-06	EFCAB14-AS1,EFCAB14	+,-	FALSE
chr1	145512944	A	G	0.00178	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr4	39550558	T	C	0.00441	UGDH-AS1,SMIM14	+,-	FALSE	AluSx1	SINE,Alu
chr1	2115914	G	T	0.00970	PRKCZ,FAAP20	+,-	FALSE
chr16	10624997	T	C	1.19407E-05	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	22109370	G	A	0.00371	USP48	-	FALSE
chr2	174086933	C	A	0.00457	ZAK,MLK7-AS1	+,-	FALSE	AluJo	SINE,Alu
chr12	125269475	T	C	0.00184	SCARB1	-	FALSE
chr7	156762446	G	T	0.00162	NOM1	+	FALSE
chr2	10270775	G	T	0.00953	RRM2	+	FALSE	AluSx	SINE,Alu
chr9	125609941	G	A	0.00043		.	FALSE
chr1	28662053	G	A	0.00158	MED18	+	FALSE	AluSq2	SINE,Alu
chr5	478174	C	T	0.00392	SLC9A3,LOC100288152	+,-	FALSE
chr1	153920564	A	G	0.00057	CRTC2	-	FALSE
chr1	46032311	A	G	0.00340	AKR1A1	+	FALSE
chr1	10517653	T	C	0.00256		.	FALSE	AluSx1	SINE,Alu
chr6	52226984	G	A	0.00127	PAQR8	+	FALSE	(GCTCGG)n	SINE,Alu
chr1	33148789	A	G	0.00568	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr5	41919747	C	T	0.00814	C5orf51	+	FALSE	L2c	SINE,Alu
chr1	1593857	T	C	0.00217	CDK11B,SLC35E2B	-	FALSE
chr3	13670508	G	A	0.00017	FBLN2	+	FALSE
chr3	10192596	A	G	7.92003E-05	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	226333561	A	G	0.00373	ACBD3	-	FALSE
chr1	240255560	G	A	0.00810	FMN2	+	FALSE	(GGC)n	SINE,Alu
chr3	99516879	A	T	7.79377E-13	MIR548G	-	FALSE
chr1	16944809	G	C	0.00072	CROCCP2	-	FALSE
chr14	93712365	A	G	0.00210	BTBD7	-	FALSE
chr2	206987629	T	C	0.00491		.	FALSE	AluJb	SINE,Alu
chr1	23835794	A	G	0.00132	E2F2	-	FALSE
chr3	183890097	G	A	1.43668E-06	DVL3	+	FALSE
chr17	8286136	T	A	0.00706	RPL26	-	FALSE
chr2	67630980	G	A	0.00225	ETAA1	+	FALSE
chr2	3502625	T	C	0.00800	ADI1	-	FALSE
chr1	152187183	C	A	0.00373	HRNR	-	FALSE
chr2	207174868	G	A	1.60070E-05	ZDBF2	+	FALSE
chr3	197612430	A	G	0.00052		.	FALSE	AluSp	SINE,Alu
chr1	28662213	A	G	0.00013	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	20978457	T	C	0.00036	PINK1-AS,DDOST	-	TRUE	AluY	SINE,Alu
chr1	8931947	T	C	0.00059	ENO1	-	FALSE
chr2	37330431	T	C	0.00231		.	FALSE	AluSq2	SINE,Alu
chr1	145689717	A	G	0.00696	NBPF20,NBPF10	+	TRUE	AluJb	SINE,Alu

RBP	XRCC6
Knock-Method	shRNA
RBP Family	SAP
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR500WHE
Platform	HiSeq
Pubmed ID	32252787

XRCC6 - Target Gene Network