RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr8	30536544	T	C	5.33169E-07	GSR	-	TRUE	AluSp	SINE,Alu
chr1	38174665	G	A	0.00339	CDCA8	+	FALSE
chr17	25640011	A	G	0.00228	WSB1	+	TRUE	AluSx	SINE,Alu
chr1	36535590	A	G	0.00301		.	FALSE	AluSx1	SINE,Alu
chr1	222907790	C	T	0.00253	BROX	+	FALSE
chr17	53470462	C	T	0.00230	MMD	-	FALSE
chr2	217366674	A	G	0.00889		.	FALSE	AluSz	SINE,Alu
chr1	10519888	T	C	0.00878		.	FALSE	AluJr	SINE,Alu
chr7	63808867	C	A	0.00556	ZNF736	+	FALSE
chr1	150619971	G	A	0.00126	GOLPH3L	-	FALSE	AluJo	SINE,Alu
chr1	28218100	T	C	0.00080	RPA2	-	FALSE
chr5	72801321	T	A	0.00212	BTF3	+	FALSE
chr1	1594940	T	C	0.00115	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr1	244572645	T	G	0.00218	ADSS	-	FALSE
chr2	9629305	A	T	0.00079	ADAM17	-	FALSE
chr9	132268442	A	G	0.00642	LINC00963	+	TRUE	AluJb	SINE,Alu
chr1	203766875	T	C	3.09664E-07	ZC3H11A,ZBED6	+	FALSE
chr1	16953672	C	T	0.00243	CROCCP2	-	FALSE
chr3	69026314	G	A	0.00881	EOGT	-	FALSE	AluSz6	SINE,Alu
chr1	205320515	A	G	0.00022	KLHDC8A	-	FALSE
chr1	225974614	A	G	0.00209	SRP9	+	TRUE	AluJr	SINE,Alu
chr5	178986978	C	G	0.00341	RUFY1	+	FALSE
chr1	9331255	A	G	0.00992	H6PD	+	TRUE	AluSx	SINE,Alu
chr7	128294489	G	T	0.00354	LINC01000	+	FALSE
chr2	101622888	T	A	0.00210	RPL31	+	FALSE
chr2	206982296	T	C	0.00720		.	FALSE	AluSg7	SINE,Alu
chr22	18572728	A	G	0.00050	PEX26	+	TRUE	AluYf1	SINE,Alu
chr1	31342611	A	C	0.00145	SDC3	-	FALSE
chr1	29443675	T	C	0.00190	EPB41	+	FALSE
chr4	123816376	A	T	0.00445	FGF2,NUDT6	+,-	FALSE
chr7	4802065	C	T	0.00279	FOXK1	+	FALSE
chr1	89447720	G	A	0.00029	KYAT3,RBMXL1	-	FALSE
chr7	17384334	A	G	0.00013	AHR	+	TRUE	AluSx	SINE,Alu
chr2	220406239	T	G	0.00035	CHPF	-	FALSE	MIRb	SINE,Alu
chr7	6501828	C	A	0.00114	KDELR2	-	FALSE
chr1	10520378	T	C	0.00895		.	FALSE	AluSx1	SINE,Alu
chr1	24296708	A	G	0.00512		.	FALSE
chr22	18571343	A	G	0.00501	PEX26	+	TRUE	AluSz	SINE,Alu
chr1	71532815	G	A	0.00712	ZRANB2-AS1,ZRANB2	+,-	FALSE
chr1	120163247	T	C	0.00365	ZNF697	-	FALSE
chr1	142660072	T	G	0.00773		.	FALSE
chr4	54244053	G	C	0.00726	FIP1L1	+	FALSE	(CGGAG)n	SINE,Alu
chr3	182632684	G	A	0.00116	ATP11B	+	FALSE
chr1	220231263	T	C	0.00300	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr1	32096265	A	G	0.00208	PEF1	-	FALSE
chr5	179048449	T	G	0.00394	HNRNPH1	-	FALSE
chr1	46828700	A	G	0.00273	NSUN4	+	FALSE
chr6	43582895	A	G	0.00983	POLH	+	TRUE	AluSx1	SINE,Alu
chr3	5258236	G	C	3.37681E-06	EDEM1	+	FALSE
chr7	64435684	T	G	0.00239	ZNF117	-	FALSE
chr2	72403405	A	C	0.00227	EXOC6B	-	FALSE	GA-rich	SINE,Alu
chr13	46530764	T	G	0.00385		.	FALSE
chr1	1469787	C	T	0.00010	ATAD3A	+	FALSE
chr1	19543459	T	C	0.00395	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	21100862	C	A	0.00012	HP1BP3	-	FALSE	(AC)n	SINE,Alu
chr14	19685015	C	G	0.00069	DUXAP10	+	FALSE
chr1	145375858	T	C	0.00069	NBPF20,NBPF10	+	FALSE
chr1	9162223	T	C	0.00778		.	FALSE	AluSx	SINE,Alu
chr1	45279903	C	T	0.00052		.	FALSE	(TCTT)n	SINE,Alu
chr1	67874689	T	C	0.00338	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	24086794	G	T	0.00028	TCEB3	+	FALSE	(T)n	SINE,Alu
chr11	118888992	C	G	0.00222	RPS25	-	FALSE
chr6	13789467	T	C	0.00019	MCUR1	-	TRUE	AluSg	SINE,Alu
chr1	65693725	C	T	0.00202	AK4	+	FALSE
chr1	65900357	G	T	0.00851	LEPR,LEPROT	+	FALSE
chr1	10520487	T	C	0.00559		.	FALSE	AluSx1	SINE,Alu
chr1	15909744	C	T	0.00225	AGMAT	-	FALSE
chr1	55316322	A	G	0.00929	DHCR24	-	FALSE
chr19	1863170	G	A	0.00204	KLF16	-	FALSE
chr1	89649522	T	C	0.00358	GBP4	-	TRUE	AluJb	SINE,Alu
chr16	46614656	T	A	0.00565	SHCBP1	-	FALSE
chr8	128752685	G	A	0.00000	MYC	+	FALSE
chr2	99812843	A	G	0.00966	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	90401562	C	A	0.00057	LRRC8D	+	FALSE
chr3	49762662	G	T	6.99764E-06	IP6K1	-	FALSE
chr7	117832138	G	A	0.00885	LSM8	+	FALSE
chr1	17928	T	A	0.00956	WASH7P	-	FALSE
chr2	132481508	C	G	0.00093	C2orf27A	+	FALSE
chr5	14397238	T	C	0.00552	TRIO	+	FALSE
chr1	45452227	G	C	0.00084	EIF2B3	-	FALSE
chr8	30536078	T	C	5.73232E-10	GSR	-	FALSE	AluJr	SINE,Alu
chr1	10517314	T	C	0.00617		.	FALSE	AluJr	SINE,Alu
chr1	53289852	A	G	0.00228	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr3	14986080	T	C	4.44089E-16	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	149913513	T	C	0.00495	OTUD7B	-	TRUE	MER96B	SINE,Alu
chr4	5743512	T	C	0.00045	EVC	+	FALSE
chr3	191114266	T	C	0.00258	CCDC50	+	FALSE
chr16	74655591	T	G	0.00652	RFWD3	-	FALSE	AluSx	SINE,Alu
chr2	164466038	C	A	0.00021	FIGN	-	FALSE
chr1	16889044	T	A	0.00256	NBPF1	-	FALSE
chr16	29454295	T	C	0.00019	SMG1P6,BOLA2-SMG1P6	-	TRUE	Tigger4a	SINE,Alu
chr3	188602081	A	C	7.06828E-05	LPP	+	FALSE	MIRc	SINE,Alu
chr2	50148477	C	T	0.00741	NRXN1	-	FALSE
chr1	3730332	T	C	9.76659E-06	CEP104	-	TRUE	AluSx3	SINE,Alu
chr1	113455427	T	A	0.00814	SLC16A1	-	FALSE
chr1	2335871	G	A	0.00298	RER1	+	FALSE
chr2	61277486	A	G	0.00355	PEX13	+	TRUE	AluSx	SINE,Alu
chr3	176739159	A	C	0.00304	TBL1XR1	-	FALSE
chr4	152025795	T	A	0.00516	RPS3A	+	FALSE
chr1	100549600	G	T	0.00181	SASS6	-	FALSE
chr12	125269489	C	T	0.00817	SCARB1	-	FALSE
chr11	67795299	G	A	0.00764	ALDH3B1	+	FALSE
chr4	17802783	T	C	6.83941E-07	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	65897981	G	A	0.00071	LEPR,LEPROT	+	FALSE
chr1	47844500	T	G	0.00169	CMPK1	+	FALSE
chr1	36068276	T	C	0.00225	PSMB2	-	TRUE	AluSc	SINE,Alu
chr3	44790781	T	C	0.00289	KIAA1143	-	TRUE	AluY	SINE,Alu
chr1	117530213	G	T	0.00256	PTGFRN	+	FALSE
chr7	105162638	G	C	0.00155	PUS7	-	FALSE
chr1	54412181	T	C	0.00524	LRRC42	+	FALSE
chr2	61277775	A	G	0.00640	PEX13	+	TRUE	AluY	SINE,Alu
chr17	40466890	G	T	0.00260	STAT3	-	FALSE	AluSc8	SINE,Alu
chr17	57279281	A	G	0.00918	PRR11	+	TRUE	AluSq2	SINE,Alu
chr17	49042289	G	T	0.00737	SPAG9	-	FALSE	AluJb	SINE,Alu
chr2	69685864	A	C	0.00610	AAK1	-	FALSE	(CA)n	SINE,Alu
chr1	145688664	A	T	0.00081	NBPF20,NBPF10,RNF115	+	FALSE
chr1	9740894	C	T	0.00097	PIK3CD,PIK3CD-AS2	+,-	FALSE	MLT1F1	SINE,Alu
chr1	186281696	T	G	0.00564	PRG4,TPR	+,-	FALSE
chr1	36067749	T	C	0.00735	PSMB2	-	TRUE	AluSz	SINE,Alu
chr6	150046734	T	C	0.00248	NUP43	-	FALSE
chr2	85132775	C	G	7.25564E-06	TMSB10	+	FALSE
chr2	217366197	T	A	0.00018		.	FALSE
chr3	109049177	A	T	0.00044	DPPA4	-	FALSE	AluSp	SINE,Alu
chr4	153898736	A	G	0.00574	FHDC1	+	FALSE	AluJb	SINE,Alu
chr1	205687365	C	T	0.00071	NUCKS1	-	FALSE	(T)n	SINE,Alu
chr2	224621887	T	C	0.00373	AP1S3	-	FALSE	AluSc	SINE,Alu
chr19	35741552	C	T	0.00165	LSR	+	FALSE
chr1	145511929	A	G	0.00028	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr2	220370192	C	T	0.00055	GMPPA	+	FALSE
chr5	175802154	C	T	0.00883		.	FALSE	(CATC)n	SINE,Alu
chr1	16889985	T	C	0.00583	NBPF1	-	FALSE
chr1	23833608	G	A	0.00890	E2F2	-	FALSE
chr1	53366673	A	G	0.00243	ECHDC2	-	FALSE	AluJb	SINE,Alu
chr4	2940430	T	C	2.47251E-05	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr2	74442548	C	T	0.00035		.	FALSE
chr5	37291446	T	C	6.87884E-05		.	FALSE	AluSx3	SINE,Alu
chr1	10521254	T	C	0.00684	DFFA	-	TRUE	AluY	SINE,Alu
chr1	10518821	T	C	0.00913		.	FALSE	AluSx1	SINE,Alu
chr1	10521130	T	C	0.00807	DFFA	-	TRUE	AluY	SINE,Alu
chr2	164466039	A	C	0.00456	FIGN	-	FALSE
chr1	9162362	T	C	0.00526		.	FALSE	AluSx	SINE,Alu
chr3	57612271	T	C	0.00831	DENND6A,PDE12	+,-	FALSE	AluSp	SINE,Alu
chr1	10043504	A	G	0.00213	NMNAT1	+	FALSE	AluSx3	SINE,Alu
chr7	6501830	G	A	0.00217	KDELR2	-	FALSE
chr1	43629979	G	T	0.00470	EBNA1BP2	-	FALSE
chr16	71681515	A	G	0.00308	PHLPP2	-	FALSE
chr12	133298095	A	G	0.00081	PGAM5	+	TRUE	AluJo	SINE,Alu
chr1	67874859	T	C	0.00071	SERBP1	-	TRUE	AluSx	SINE,Alu
chr4	177252327	A	G	2.51883E-09	SPCS3	+	TRUE
chr1	184762627	T	C	0.00416	FAM129A	-	TRUE	AluSz	SINE,Alu
chr1	146650363	T	A	0.00982	PDIA3P1	+	FALSE
chr2	72405098	C	A	0.00646	EXOC6B	-	FALSE
chr1	23409538	G	A	0.00464	KDM1A	+	FALSE
chr1	154128838	G	T	0.00062	TPM3	-	FALSE
chr7	158679732	G	A	0.00456	WDR60	+	FALSE
chr1	47905555	A	C	0.00661	FOXD2	+	FALSE
chr1	10517527	T	C	8.32015E-05		.	FALSE	AluSx1	SINE,Alu
chr1	16893721	A	C	0.00043	NBPF1	-	FALSE
chr10	117823566	G	T	0.00433	GFRA1	-	FALSE	(ATC)n	SINE,Alu
chr1	3730400	T	C	6.07343E-08	CEP104	-	TRUE	AluSx3	SINE,Alu
chr19	19793795	A	G	0.00030	ZNF101	+	TRUE	AluSc8	SINE,Alu
chr1	28662105	A	G	0.00846	MED18	+	TRUE	AluSq2	SINE,Alu
chr11	76733945	A	T	0.00931	ACER3	+	FALSE	A-rich	SINE,Alu
chr14	100762714	T	C	0.00573	SLC25A29	-	TRUE	AluJo	SINE,Alu
chr16	10623705	T	C	0.00011	EMP2	-	TRUE	AluSp	SINE,Alu
chr6	158517308	A	G	0.00959	SYNJ2	+	FALSE
chr6	158613393	A	T	0.00108	GTF2H5	+	FALSE
chr12	10761846	A	G	0.00224	MAGOHB	-	FALSE
chr17	48155425	G	A	0.00603	ITGA3	+	FALSE
chr10	11912065	C	G	0.00191	PROSER2-AS1,PROSER2	+,-	FALSE
chr4	120979178	T	C	0.00433		.	FALSE	AluSg4	SINE,Alu
chr1	36770065	C	T	0.00131	THRAP3	+	FALSE	(T)n	SINE,Alu
chr1	89447854	G	T	0.00310	KYAT3,RBMXL1	-	FALSE
chr1	39470977	C	A	0.00347	AKIRIN1	+	FALSE	AluSx1	SINE,Alu
chr2	37327670	T	C	0.00021		.	FALSE
chr1	12401868	A	C	0.00394	VPS13D	+	FALSE
chr3	141164940	C	A	0.00194	ZBTB38	+	FALSE
chr3	124948047	C	G	0.00670	ZNF148	-	FALSE
chr1	145512925	A	G	0.00230	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	14143003	A	G	0.00028	PRDM2	+	FALSE
chr19	21474901	T	C	1.34658E-06	ZNF708	-	TRUE	AluSc	SINE,Alu
chr1	87328400	C	T	0.00755	SEP15	-	FALSE
chr20	35467713	G	A	0.00373	SOGA1	-	FALSE
chr3	196670090	G	A	6.78352E-09	NCBP2-AS2	+	FALSE
chr1	19244904	G	A	0.00487	IFFO2	-	FALSE
chr1	10520683	T	C	0.00582	DFFA	-	TRUE	AluSc8	SINE,Alu
chr16	88789702	G	A	0.00125	PIEZO1	-	FALSE
chr1	28060574	A	G	0.00206	FAM76A	+	FALSE
chr1	183112505	T	C	0.00525	LAMC1	+	FALSE
chr1	160966376	T	C	0.00996	F11R	-	TRUE	AluSg	SINE,Alu
chr1	109476363	A	G	0.00172	GPSM2,CLCC1	+,-	FALSE
chr1	19585554	A	G	2.15626E-06	MRTO4	+	TRUE	AluSc8	SINE,Alu
chr17	73940918	T	C	6.48265E-05	ACOX1	-	TRUE	AluSx1	SINE,Alu
chr14	50361171	C	T	0.00017	ARF6	+	FALSE	(T)n	SINE,Alu
chr2	128620435	C	A	0.00602	AMMECR1L	-	FALSE
chr1	165631670	T	G	0.00197	ALDH9A1	-	FALSE
chr2	206980072	G	A	1.35396E-05		.	FALSE	MLT1A1	SINE,Alu
chr3	14986110	T	C	0.00051	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr19	37073373	T	C	0.00492	ZNF529,ZNF529-AS1	+,-	FALSE	AluY	SINE,Alu
chr2	99812817	A	G	0.00201	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	144873887	C	T	0.00088	NBPF20,PDE4DIP	+,-	FALSE
chr1	220231347	T	C	2.85871E-07	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr1	9161011	T	C	7.97270E-05		.	FALSE	AluJb	SINE,Alu
chr3	128215735	G	A	0.00734	GATA2-AS1	+	FALSE
chr1	25570561	T	A	0.00425	RSRP1	-	FALSE	Alu	SINE,Alu
chr1	2303108	T	C	5.78895E-05	MORN1	-	FALSE	AluSp	SINE,Alu
chr1	182569318	G	T	0.00101	RGS16	-	FALSE
chr1	9163110	T	C	4.21626E-05		.	FALSE	FRAM	SINE,Alu
chr1	10520296	T	C	0.00108		.	FALSE	AluSx	SINE,Alu
chr2	178406765	T	A	0.00325	AGPS	+	FALSE
chr15	42503334	C	T	0.00448	TMEM87A	-	FALSE	(T)n	SINE,Alu
chr17	65334766	T	C	4.45484E-05	PSMD12	-	TRUE	AluSq	SINE,Alu
chr1	59142713	T	C	0.00246	MYSM1	-	FALSE
chr4	83812317	C	A	0.00553	SEC31A	-	FALSE
chr1	16909220	T	C	0.00449	NBPF1	-	FALSE
chr14	72041443	C	T	0.00842	SIPA1L1	+	FALSE
chr19	57816261	A	G	0.00156		.	FALSE	AluY	SINE,Alu
chr2	174090320	T	A	0.00174	ZAK,MLK7-AS1	+,-	FALSE	AluSx	SINE,Alu
chr1	38174665	G	A	0.00475	CDCA8	+	FALSE
chr9	7798518	G	C	0.00423	TMEM261	-	FALSE
chr6	57034841	G	T	0.00581	ZNF451,LOC101927211	+,-	FALSE
chr19	50412217	C	G	0.00017	IL4I1,NUP62	-	FALSE	(GGT)n	SINE,Alu
chr3	122283293	C	G	0.00071	DTX3L,PARP9	+,-	FALSE
chr1	8412652	A	C	0.00929	RERE	-	FALSE
chr1	10520684	T	C	0.00842	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	204521590	A	G	1.33621E-05	MDM4	+	TRUE	AluSg	SINE,Alu
chr3	48787715	T	C	0.00863	PRKAR2A	-	TRUE	AluSp	SINE,Alu
chr1	33149414	A	G	5.81443E-05	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	22186113	T	G	0.00083	HSPG2	-	FALSE
chr1	67874689	T	C	0.00112	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr4	17804879	T	C	0.00863	DCAF16	-	TRUE	AluSx	SINE,Alu
chr14	63841402	A	C	0.00692	PPP2R5E	-	FALSE
chr1	143398850	G	T	0.00639		.	FALSE
chr1	10520692	T	C	0.00973	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	205687354	T	C	0.00012	NUCKS1	-	FALSE	(T)n	SINE,Alu
chr4	129924977	C	A	0.00760	SCLT1	-	FALSE
chr1	53716416	G	A	0.00967	LRP8	-	FALSE
chr1	27180861	C	T	0.00721	ZDHHC18	+	FALSE
chr1	160231910	A	T	0.00051	DCAF8	-	FALSE
chr1	45976269	C	G	0.00039	MMACHC	+	FALSE
chr1	16893686	G	C	0.00296	NBPF1	-	FALSE
chr12	133297961	A	G	1.06136E-06	PGAM5	+	TRUE	AluJo	SINE,Alu
chr3	48787684	T	C	0.00494	PRKAR2A	-	TRUE	AluSp	SINE,Alu
chr2	85773623	T	C	0.00203	GGCX	-	TRUE	AluSx1	SINE,Alu
chr1	46032974	T	C	0.00196	AKR1A1	+	FALSE
chrX	102613351	A	G	0.00969	TCEAL9	+	FALSE	L1ME4a	SINE,Alu
chr2	37331019	T	C	0.00597		.	FALSE	AluSx1	SINE,Alu
chr1	236208773	C	T	0.00722	NID1	-	FALSE
chr15	63363388	G	T	0.00096	TPM1	+	FALSE
chr1	16890484	G	C	0.00704	NBPF1	-	FALSE
chr1	204521580	A	G	0.00169	MDM4	+	TRUE	AluSg	SINE,Alu
chr18	6986227	G	A	3.73397E-05	LAMA1	-	FALSE
chr1	210025751	G	A	4.42687E-05	DIEXF	+	FALSE	Tigger4a	SINE,Alu
chr2	86249930	T	C	0.00269	LOC90784	-	TRUE	AluJr	SINE,Alu

RBP	DDX21
Knock-Method	shRNA
RBP Family	DEAD
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR961WVL
Platform	HiSeq
Pubmed ID	32252787

DDX21 - Target Gene Network