Dataset Overview
RBPBUD13
Knock-MethodshRNA
RBP FamilyBud13
Biosample NameHepG2
Tissue TypeLiver
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR382QKD
PlatformHiSeq
Pubmed ID32252787

BUD13 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of BUD13
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of BUD13


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chrX106184603AT0.00717MORC4-FALSE(GA)nSINE,Alu
chr613788215TC0.00546MCUR1-TRUEAluSxSINE,Alu
chr1326539AG0.00450.FALSE
chr1120839681CA0.00077FAM72B+FALSE
chr1151092839AG0.00135GABPB2+TRUEAluSpSINE,Alu
chr144088556CA0.00260PTPRF+FALSEA-richSINE,Alu
chr2102508654TG0.00010MAP4K4+FALSE
chr2207943813GT0.00619KLF7-FALSE(TTTTGT)nSINE,Alu
chr596129512AG0.00997ERAP1-FALSE
chr5134062608GT0.00171SEC24A+FALSE
chr1182568729CG0.00012RGS16-FALSE
chr2176791759AC0.00232LNPK-FALSEL2bSINE,Alu
chr120826781CT9.86003E-06MUL1-FALSE
chr5115428334GT0.00265COMMD10+FALSE
chr1450361171CT0.00017ARF6+FALSE(T)nSINE,Alu
chr2232319524TA0.00040NCL-FALSE
chr261416403TG0.00350USP34-FALSEAluSc8SINE,Alu
chr16684050GA2.21294E-05PHF13+FALSE
chr187213174TG0.00081SH3GLB1+FALSE
chr314986098TC0.00000FGD5-AS1-TRUEFLAM_CSINE,Alu
chr1675479891TC9.48885E-06TMEM170A-TRUEAluSg4SINE,Alu
chr128661653AG0.00053MED18+TRUEAluSgSINE,Alu
chr2203741654TC0.00611.FALSEAluJrSINE,Alu
chr133148716TC0.00835SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr2233257176AG0.00930SYN3,TIMP3+,-FALSE
chr193826819AT0.00086DR1+FALSE(GTTTT)nSINE,Alu
chr720177525TC0.00052MACC1,LOC101927668-TRUEAluSxSINE,Alu
chr1109240642AC0.00373PRPF38B+FALSE
chr2218572729AG0.00228PEX26+TRUEAluYf1SINE,Alu
chr110521238TC0.00232DFFA-TRUEAluYSINE,Alu
chrX123046598AG0.00371XIAP+TRUEAluSzSINE,Alu
chr2174090321CA0.00563ZAK,MLK7-AS1+,-FALSEAluSxSINE,Alu
chr1151966348CT0.00511S100A10-FALSE
chr1120539711GT0.00627NOTCH2-FALSE
chr1942376710AG1.82395E-05.FALSEAluSpSINE,Alu
chr132631809CT1.50957E-07KPNA6+FALSE
chr2128064423CT0.00063MAP3K2-FALSE
chr6109785887TC7.14632E-06MICAL1,ZBTB24-TRUEAluJrSINE,Alu
chr764023371TC0.00824ZNF680-FALSE
chr19163405TC0.00014.FALSEAluSpSINE,Alu
chr1765334867TC1.03096E-06PSMD12-TRUEAluSqSINE,Alu
chr115993714TA0.00066.FALSE
chr11595586TC0.00206CDK11B,SLC35E2B-TRUEAluJrSINE,Alu
chr5125961810AG3.92353E-06PHAX+TRUEFLAM_CSINE,Alu
chr1146628742TG0.00102PRKAB2-FALSE
chr1533064791GA0.00203FMN1-FALSE
chr1119693495AG0.00996LOC101929147+TRUEAluSxSINE,Alu
chr3125033835TG0.00385ZNF148-FALSEAluJbSINE,Alu
chr7197428GA3.11254E-09FAM20C+FALSE
chr5125961447AG0.00242PHAX+TRUEAluSz6SINE,Alu
chr147142538GA0.00870EFCAB14-AS1,EFCAB14+,-FALSE
chr3179117270TC0.00478GNB4-TRUEAluSzSINE,Alu
chr1168218573AG0.00202.FALSEAluSzSINE,Alu
chr136390527AG0.00065.FALSEL2cSINE,Alu
chr128662205CT0.00010MED18+FALSEAluSq2SINE,Alu
chr317201882CT0.00259TBC1D5-FALSE
chr119586532AG0.00166MRTO4+TRUEAluSzSINE,Alu
chr1145688973AG7.17653E-05NBPF20,NBPF10,RNF115+TRUEAluSc8SINE,Alu
chr349395694TC0.00074GPX1-FALSE
chr110517276TC0.00779.FALSEAluJrSINE,Alu
chr1688789700CT0.00703PIEZO1-FALSE
chr556177850AT0.00856MAP3K1+FALSE(CAA)nSINE,Alu
chr119984100GC0.00037MINOS1-NBL1,NBL1+FALSE
chr4128757415AG0.00367.FALSEAluYSINE,Alu
chr239210398AT0.00180SOS1-FALSE
chr3194790434CG0.00705XXYLT1-FALSE
chr75567112CT0.00000ACTB-FALSE
chr721941393AT0.00937CDCA7L-FALSE
chr4141600320AG0.00179TBC1D9-FALSE
chr126755643AG0.00728LIN28A+FALSEAluScSINE,Alu
chr153291435AG0.00790ZYG11B+TRUEAluJrSINE,Alu
chr193467751CA0.00182NFIC+FALSE(TA)nSINE,Alu
chr116932428CG0.00017NBPF1-FALSEL1MC2SINE,Alu
chr179109331GT0.00379IFI44L+FALSELTR26SINE,Alu
chr5162902516TC0.00226HMMR+FALSE
chr1145689568AG8.25649E-05NBPF20,NBPF10+TRUEAluSgSINE,Alu
chr119543465TC0.00427LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr1144601045CT0.00623NBPF20+FALSEL1MC2SINE,Alu
chr1117617705AG0.00081TTF2+FALSE
chr1180247483TC0.00167.FALSE
chr111347150CA0.00380UBIAD1+FALSE
chr287820785CT0.00110LINC00152+FALSE
chr4124237124AG0.00119SPATA5+TRUEAluJrSINE,Alu
chr6111348022AT2.41155E-06RPF2+FALSE
chr3197400501CG0.00270RUBCN-FALSE
chr6105546950TC0.00443BVES-TRUEAluJbSINE,Alu
chr110520331CT0.00060.FALSEAluSx1SINE,Alu
chr3156258230TC0.00176SSR3-TRUEAluYk3SINE,Alu
chr1269160574AG0.00891.FALSEAluJbSINE,Alu
chr1911945685AG0.00016ZNF440+TRUEAluSpSINE,Alu
chr16283434TC0.00285ICMT-TRUEAluSx3SINE,Alu
chr127248275CT0.00047NUDC+FALSE
chr3119212010AG0.00685POGLUT1+FALSE
chr153289892AG0.00079ZYG11B+TRUEFRAMSINE,Alu
chr121810575TC0.00827NBPF3+FALSE
chr119542458TC0.00113LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr1565442647TC2.02205E-07CLPX-TRUEAluSg4SINE,Alu
chr13806074GA0.00809C1orf174-FALSEAluSpSINE,Alu
chr285132777TC1.13350E-06TMSB10+FALSE
chr11595074TC0.00296CDK11B,SLC35E2B-TRUEAluSgSINE,Alu
chr1542503336CT0.00916TMEM87A-FALSE(T)nSINE,Alu
chr17263367AT2.02495E-05LOC105371430,C17orf97+,-FALSE
chr155207982CA0.00063MROH7-TTC4,TTC4+FALSE
chr1542824348AG0.00685SNAP23+TRUEAluSgSINE,Alu
chr12336210CT0.00206RER1+FALSE
chr272403405AC0.00227EXOC6B-FALSEGA-richSINE,Alu
chr136068364TC0.00013PSMB2-TRUEAluScSINE,Alu
chr7100860467CG0.00267PLOD3-FALSE
chr128261664TA7.89583E-05SMPDL3B+FALSE
chr288327464CT0.00046KRCC1-FALSE
chr1212911836TC0.00675NSL1-FALSE
chr5145666109AT0.00728RBM27+FALSE
chr237328075TC0.00863.FALSE
chr154493197TC0.00064TMEM59-TRUEAluSz6SINE,Alu
chr63022544TC7.02821E-06HTATSF1P2-TRUEAluJrSINE,Alu
chr5135391374CT3.54402E-06TGFBI+FALSE
chr729960804CT6.73191E-06SCRN1-FALSE
chr729962666TA0.00077SCRN1-FALSE
chr12133297934AG9.03426E-06PGAM5+TRUEAluJoSINE,Alu
chr136067677TC0.00655PSMB2-TRUEAluSzSINE,Alu
chr3196729939CT0.00862MELTF,MFI2-AS1+,-FALSEG-richSINE,Alu
chr223918891CT1.03047E-06KLHL29+FALSE
chr1298942644AG0.00133TMPO+TRUEAluScSINE,Alu
chr388104072TA0.00815CGGBP1-FALSE
chr6109001948GA0.00030FOXO3+FALSE(A)nSINE,Alu
chr1182360928AC0.00635GLUL-FALSE
chr133149399AG0.00308SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr123636274GT0.00165HNRNPR-FALSE
chr812283473CT0.00582FAM86B2-FALSE
chr10100177984CT6.55965E-05HPS1-FALSE
chr3119212009GA0.00241POGLUT1+FALSE
chr119542679TC0.00575LOC101927895,EMC1+,-FALSEFRAMSINE,Alu
chr7920724AG0.00328GET4+TRUEAluSx1SINE,Alu
chr1919793729AG0.00124ZNF101+TRUEAluSc8SINE,Alu
chr1075008965TC0.00017DNAJC9-AS1,MRPS16+,-FALSEAluJrSINE,Alu
chr23622912GT0.00000RPS7+FALSE
chr3156259314TC2.71784E-05SSR3-TRUEAluSq2SINE,Alu
chr19161357TC0.00739.FALSEAluSxSINE,Alu
chr133145958GT0.00080SYNC,RBBP4+,-FALSE(T)nSINE,Alu
chr153289892AG0.00178ZYG11B+TRUEFRAMSINE,Alu
chr1574319092AG0.00029PML+TRUEAluSz6SINE,Alu
chr540835311AT0.00632RPL37-FALSE
chrX77084017TC0.00179MAGT1-TRUEAluSzSINE,Alu
chr1149913733TC0.00143OTUD7B-TRUEMER96BSINE,Alu
chr3196230564GC0.00842RNF168-FALSE
chr145973928GA0.00093MMACHC+FALSE
chr2136541076CA0.00211UBXN4+FALSE
chr1236714710CT0.00014LGALS8,HEATR1+,-FALSE
chr28823952TG1.04377E-05ID2+FALSE
chr185786299TA0.00502DDAH1-FALSE
chr122419433TG0.00200CDC42+FALSE
chr1569492TC0.00336.FALSE
chr1116234083TA0.00477VANGL1+FALSE
chr110519951TC0.00378.FALSEAluJrSINE,Alu
chr830536078TC0.00509GSR-FALSEAluJrSINE,Alu
chr9139698779CG0.00106CCDC183,CCDC183-AS1+,-FALSEL2bSINE,Alu
chr1144852203TG0.00518NBPF20,PDE4DIP+,-FALSE
chr2210885022CT0.00325RPE+FALSE
chr5151041876GT5.29152E-05SPARC-FALSE
chr1474526976TC1.13179E-06BBOF1,ALDH6A1+,-FALSEAluJoSINE,Alu
chr1146650289CT0.00024PDIA3P1+FALSE
chr119543349TC0.00060LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr19160982TC0.00350.FALSEAluJbSINE,Alu
chr162821024CT0.00406SRRM2+FALSE
chr536143413GA0.00097LMBRD2-FALSE
chr133149408AG0.00624SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr237327670TC0.00297.FALSE
chr12125114CT1.71441E-12FAAP20-FALSE
chr119543356TC0.00110LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr286947783CT0.00515RNF103-CHMP3,RMND5A+,-FALSE
chr121940555CT0.00067RAP1GAP-FALSE
chr111347150CA0.00016UBIAD1+FALSE
chr139988084GA0.00060BMP8A,PPIEL+,-FALSE
chr228639641CG0.00431.FALSE
chr138174583AC0.00644CDCA8+FALSE
chr145975498AG0.00064MMACHC+TRUEAluSx4SINE,Alu
chr1179042905AG0.00972FAM20B+TRUE
chr1681064534AG0.00480CENPN+TRUEAluSgSINE,Alu
chr1269237509AG1.55617E-05MDM2+TRUE
chr1550648940CT0.00114GABPB1-AS1+FALSE
chr11419743AG0.00848ATAD3B+TRUEAluYk2SINE,Alu
chr1957804719AC0.00361ZNF460+FALSE
chr2198416722AT0.00970HSPE1-MOB4,MOB4+FALSE
chr3191097966TC1.34670E-13CCDC50+FALSE
chr136068231TC0.00022PSMB2-TRUEAluScSINE,Alu
chrX77083941TC0.00271MAGT1-TRUEAluSzSINE,Alu
chr439550977TC3.35724E-05UGDH-AS1,SMIM14+,-FALSEAluSzSINE,Alu
chr1168218735AG0.00924.FALSEAluSzSINE,Alu
chr237327666TC0.00028.FALSE
chr1145689533AG0.00618NBPF20,NBPF10+TRUEAluSgSINE,Alu
chr817503270GC0.00410MTUS1-FALSE
chr1911256697TC0.00039SPC24-TRUEAluJr4SINE,Alu
chr3121382204CT0.00309GOLGB1-FALSE
chr133961147TG0.00911ZSCAN20+FALSE
chr271214819AT0.00346TEX261-FALSE
chrX77083915TC0.00075MAGT1-TRUEAluSzSINE,Alu
chr41205680CA0.00247CTBP1-AS,CTBP1+,-FALSE
chr344487862GA0.00262ZNF445-FALSE
chr159122871CT0.00863MYSM1-FALSE
chr5180682608CA0.00144CTC-338M12.4+FALSE
chr111979814GA0.00041KIAA2013-FALSE
chr1144595935GA0.00359NBPF20+FALSEAluJbSINE,Alu
chr5180682606CA0.00042CTC-338M12.4+FALSE
chr117320251GA0.00367ATP13A2-FALSE
chr350150360AG0.00651RBM5+TRUEAluSxSINE,Alu
chrX118920477AT0.00529RPL39-FALSE
chr2216148871TG0.00071.FALSETigger1SINE,Alu
chr237331025TC0.00055.FALSEAluSx1SINE,Alu
chr4165996811TC6.80024E-05.FALSEAluSg4SINE,Alu
chr117733270TA0.00088RCC2-FALSE
chr16283264TC0.00521ICMT-TRUEAluSx3SINE,Alu
chr195658358TC0.00633TMEM56-RWDD3,LOC101928118,TMEM56+,-FALSE
chr1629707549AG0.00025QPRT+TRUEAluJrSINE,Alu
chr117393260TC0.00094PADI2-FALSE
chr264859679TC0.00824SERTAD2-FALSE
chr10114209888AG0.00386VTI1A+TRUEAluSx3SINE,Alu
chr1145116147TA0.00031NBPF20,SEC22B+FALSE
chr2222050366TC0.00449PPIL2+FALSEMER5ASINE,Alu
chr4153701130CT2.11271E-05ARFIP1+FALSE
chr1226171400TC0.00359SDE2-TRUEBC200SINE,Alu
chr111979807CA0.00574KIAA2013-FALSE
chr642854580AG0.00330RPL7L1+TRUEAluScSINE,Alu
chr28823958GA0.00017ID2+FALSE
chr3124950418TA0.00039ZNF148-FALSE
chr1592715131AT0.00306SLCO3A1+FALSE
chr122159774GA0.00257HSPG2-FALSE
chr4145031951TA0.00377GYPA-FALSE(TG)nSINE,Alu
chr2219460472TC0.00187CNOT9+FALSE
chr1269237021AG0.00229MDM2+TRUE
chr220401859AT0.00930SDC1-FALSE(A)nSINE,Alu
chr1114443474AG9.14620E-06AP4B1-AS1,AP4B1+,-FALSEAluSpSINE,Alu
chr16583701TC0.00029NOL9-FALSE
chr5125961166AG0.00732PHAX+TRUEAluSzSINE,Alu
chr237331565TC0.00121.FALSEAluJbSINE,Alu
chr224227417AG0.00831.FALSEAluScSINE,Alu
chr1146650542AG0.00017PDIA3P1+FALSE
chr1272182168GC0.00867RAB21+FALSE
chr19328223AG0.00591H6PD+TRUEAluJrSINE,Alu
chr1591044387TG0.00077IQGAP1+FALSE
chr119633555GA0.00219AKR7A2-FALSE
chrX123046306AG0.00016XIAP+TRUEAluJbSINE,Alu
chr136067925TC0.00397PSMB2-TRUEAluSzSINE,Alu
chr5130540369CA0.00196LYRM7+FALSETigger4aSINE,Alu
chr255516911AG0.00719CCDC88A-FALSE(GA)nSINE,Alu
chr12115914GT0.00970PRKCZ,FAAP20+,-FALSE
chr2114718893CG0.00631ACTR3+FALSE
chr3181430143GT0.00126SOX2-OT,SOX2+FALSE
chr310302056AG0.00018TATDN2+FALSE
chr158999651TG0.00484OMA1-FALSE
chr116889563CA0.00090NBPF1-FALSE
chr138463504CT0.00068FHL3-FALSE
chr534906156TC2.52494E-05RAD1-TRUEAluSx1SINE,Alu
chr775045694CT1.64957E-05NSUN5P1+FALSE
chr117298140CG0.00584CROCC+FALSE
chr2231683849AG0.00786CAB39+FALSE
chr642856045AG0.00428RPL7L1+TRUEAluSzSINE,Alu
chr1145509493AG0.00264NBPF20,NBPF10,RBM8A+TRUEAluJrSINE,Alu
chr457326156AG0.00230PAICS+TRUEAluJrSINE,Alu
chr479447807GC0.00339FRAS1+FALSE
chr3112720120TG0.00573GTPBP8+FALSE
chr2174090928GC0.00852ZAK,MLK7-AS1+,-FALSE
chr1936260451AG0.00854.FALSEAluYSINE,Alu
chr18921471CT6.67995E-05ENO1-FALSE
chr2191745653TG0.00799GLS+FALSE
chr110519982TC3.22355E-05.FALSEAluJrSINE,Alu
chr171531596AG1.07667E-05ZRANB2-AS1,ZRANB2+,-FALSE
chr2132278176TG0.00291LOC150776+FALSE
chr16583270CG0.00529NOL9-FALSE

Differential Expression Gene Analysis