Dataset Overview
RBP
BUD13
Knock-Method
shRNA
RBP Family
Bud13
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR382QKD
Platform
HiSeq
Pubmed ID
32252787
BUD13 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of BUD13
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1BG
10.57
11.83
0.38631
0.00219
0.00572
A1CF
32.44
36.26
0.22161
0.00021
0.00070
A2M
2405.22
3601.33
0.39005
5.84067E-13
8.08793E-12
A4GALT
0.67
1.22
0.91362
0.00178
0.00477
AAGAB
8.11
6.58
-0.19168
0.02858
0.05520
AAK1
3.76
6.58
0.96002
3.92785E-24
1.71906E-22
AAR2
13.96
11.18
-0.17695
0.03512
0.06587
AARS
42.28
33.5
-0.17645
0.00669
0.01539
AASDH
4.79
3.19
-0.47796
7.27438E-06
3.30300E-05
AASDHPPT
17.61
11.55
-0.57347
1.45372E-13
2.16174E-12
Showing 1 to 10 of 7,320 entries
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Function Analysis of Target Genes of BUD13
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
APOA2
161192707_161192754_161192081_161192312_161193139_161193185
0.00290
-0.009
DataSet_01_118
View details
ATG14
55852576_55852814_55848679_55848909_55857628_55858020
0.00479
-0.2
DataSet_01_118
View details
CD46
207941043_207941168_207940357_207940540_207943665_207943707
0.00016
0.22
DataSet_01_118
View details
CXorf56
118679425_118679467_118678315_118678454_118694230_118694348
0.00316
-0.207
DataSet_01_118
View details
EI24
125439999_125440086_125439175_125439469_125442353_125442465
0.00551
-0.064
DataSet_01_118
View details
EIF4A2
186506080_186506209_186505591_186505671_186506913_186507080
0.00332
-0.019
DataSet_01_118
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EIF4B
53421565_53421703_53416276_53416411_53421798_53421972
0.00001
0.026
DataSet_01_118
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EML4
42488260_42488434_42483640_42483770_42490317_42490446
0.00762
0.011
DataSet_01_118
View details
FDPS
155279543_155279756_155278704_155278756_155279833_155279996
0.00042
0.071
DataSet_01_118
View details
FDPS
155279579_155279756_155278642_155278756_155279833_155279996
0.00029
0.078
DataSet_01_118
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Showing 1 to 10 of 40 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ALG5
37546113_37546173_37559763_37559877_37539711_37539863
0.00110
0.196
DataSet_01_118
View details
ANXA5
122604518_122604632_122607442_122607527_122602825_122602916
0.00000
-0.167
DataSet_01_118
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AP1G2
24032924_24033065_24033254_24033430_24032792_24032847
0.00188
-0.085
DataSet_01_118
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AP1G2
24032924_24033065_24033254_24033368_24032792_24032847
0.00487
-0.091
DataSet_01_118
View details
ARHGEF40
21555159_21555264_21555478_21555622_21553847_21554025
0.00516
-0.174
DataSet_01_118
View details
BPIFB2
31606442_31606628_31606867_31606921_31606064_31606156
0.00001
-0.122
DataSet_01_118
View details
CANX
179150660_179150780_179151657_179151784_179149804_179150020
0.00263
-0.047
DataSet_01_118
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CDCA8
38171112_38171239_38172649_38172736_38168923_38169019
0.00729
-0.104
DataSet_01_118
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CMPK1
47838626_47838779_47840580_47840657_47834140_47834287
0.00186
-0.079
DataSet_01_118
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CNIH4
224553580_224553693_224558984_224559125_224548196_224548265
0.00001
-0.368
DataSet_01_118
View details
Showing 1 to 10 of 58 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
MAT2A
85770023_85770166_85770023_85770157_85770792_85772403
0.00755
0.301
DataSet_01_118
View details
MOV10
113240908_113241411_113240908_113241100_113242306_113242432
0.00468
-0.2
DataSet_01_118
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SS18L1
60733727_60733907_60733727_60733804_60734932_60735017
0.00713
-0.05
DataSet_01_118
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Showing 1 to 3 of 3 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AHSG
186338374_186339107_186338883_186339107_186336285_186336426
0.00643
0.03
DataSet_01_118
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APOA2
161193139_161193291_161193139_161193215_161193384_161193418
0.00411
0.096
DataSet_01_118
View details
ASGR1
7077692_7077867_7077692_7077779_7080148_7080220
0.00634
0.015
DataSet_01_118
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DDX39B
31500556_31500744_31500556_31500688_31503143_31503262
0.00144
0.097
DataSet_01_118
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FTCD
47558793_47558966_47558793_47558837_47565330_47565435
0.00629
-0.083
DataSet_01_118
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IQSEC1
12966080_12966275_12966080_12966242_12976947_12978197
0.00553
0.215
DataSet_01_118
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NTAN1
15133825_15134006_15133825_15133923_15134924_15134978
0.00655
0.033
DataSet_01_118
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SREBF1
17721573_17721759_17721573_17721688_17722326_17722548
0.00193
0.118
DataSet_01_118
View details
STARD10
72466029_72466178_72466029_72466115_72466745_72466798
0.00450
-0.279
DataSet_01_118
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Showing 1 to 9 of 9 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
C3
6712326_6712575_6712326_6712417_6712552_6712575
0.00642
-0.119
DataSet_01_118
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CLK4
178043882_178045779_178043882_178043949_178044344_178045779
0.00672
0.347
DataSet_01_118
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FN1
216243852_216247048_216243852_216244040_216246934_216247048
0.00119
-0.011
DataSet_01_118
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RPL10
153627694_153627935_153627694_153627737_153627827_153627935
0.00000
0.062
DataSet_01_118
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SLC26A6
48665601_48665974_48665601_48665737_48665866_48665974
0.00907
0.056
DataSet_01_118
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Showing 1 to 5 of 5 entries
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
326539
A
G
0.00450
.
FALSE
chr1
120839681
C
A
0.00077
FAM72B
+
FALSE
chr1
151092839
A
G
0.00135
GABPB2
+
TRUE
AluSp
SINE,Alu
chr1
44088556
C
A
0.00260
PTPRF
+
FALSE
A-rich
SINE,Alu
chr1
182568729
C
G
0.00012
RGS16
-
FALSE
chr1
20826781
C
T
9.86003E-06
MUL1
-
FALSE
chr1
6684050
G
A
2.21294E-05
PHF13
+
FALSE
chr1
87213174
T
G
0.00081
SH3GLB1
+
FALSE
chr1
28661653
A
G
0.00053
MED18
+
TRUE
AluSg
SINE,Alu
chr1
33148716
T
C
0.00835
SYNC,RBBP4
+,-
FALSE
AluSc
SINE,Alu
Showing 1 to 10 of 268 entries
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression