RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr2	86272758	G	A	0.00023	POLR1A	-	FALSE
chr4	57326313	A	G	0.00132	PAICS	+	TRUE	AluJr	SINE,Alu
chr15	41593308	A	G	0.00619		.	FALSE	AluSz6	SINE,Alu
chr3	126755134	C	T	0.00920	PLXNA1	+	FALSE
chr19	58356478	A	G	0.00030	ZNF587B	+	TRUE	AluSx	SINE,Alu
chr4	17803681	T	C	3.85233E-06	DCAF16	-	TRUE	AluY	SINE,Alu
chr1	67874689	T	C	1.72813E-06	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr16	84778690	C	T	0.00799	USP10	+	FALSE
chr8	144940794	G	C	0.00038	EPPK1	-	FALSE
chr1	28662253	A	G	0.00187	MED18	+	TRUE	AluSq2	SINE,Alu
chr2	8823958	G	A	0.00017	ID2	+	FALSE
chr1	179042544	A	G	0.00722	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr1	146629399	G	T	0.00611	PRKAB2	-	FALSE
chr1	8413839	A	G	0.00776	RERE	-	FALSE
chr1	53291434	A	G	0.00545	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	148932848	A	G	0.00496	LOC645166	+	FALSE
chr3	124948047	C	G	0.00285	ZNF148	-	FALSE
chr16	23478710	C	A	0.00335	GGA2	-	FALSE	(AC)n	SINE,Alu
chr1	33071096	A	G	0.00692	ZBTB8A	+	TRUE	AluSx1	SINE,Alu
chr1	9161090	A	G	0.00068		.	FALSE	AluJb	SINE,Alu
chr2	10074384	G	A	0.00765	TAF1B	+	FALSE
chr19	51305797	T	C	0.00397	C19orf48	-	TRUE	AluSg	SINE,Alu
chr3	14986104	T	C	0.00992	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr9	130268408	T	C	6.51633E-05	FAM129B	-	FALSE	(CTCA)n	SINE,Alu
chr1	145512141	A	G	0.00215	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr2	37331565	T	C	0.00121		.	FALSE	AluJb	SINE,Alu
chr1	12071680	A	G	0.00127	MFN2	+	FALSE
chr12	124146597	A	G	0.00121	GTF2H3	+	TRUE	AluSq2	SINE,Alu
chr7	38763068	T	C	0.00361		.	FALSE	AluSx3	SINE,Alu
chr5	125962086	A	G	0.00231	PHAX	+	TRUE	AluSz	SINE,Alu
chr1	28661653	A	G	9.75782E-05	MED18	+	TRUE	AluSg	SINE,Alu
chr2	202030111	A	G	0.00983	CFLAR	+	TRUE	AluSx1	SINE,Alu
chr8	145159718	G	C	0.00409	MAF1	+	FALSE
chr2	229890660	A	G	0.00596	PID1	-	FALSE
chr1	205737682	A	G	0.00320	RAB29	-	FALSE	AluSq2	SINE,Alu
chr1	16133912	T	C	0.00126	UQCRHL	-	TRUE
chr1	145512074	A	G	0.00084	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	151742798	T	C	0.00626	OAZ3	+	FALSE
chr22	33257373	G	A	0.00581	SYN3,TIMP3	+,-	FALSE
chr1	6282237	T	C	0.00771	ICMT	-	TRUE	AluSz	SINE,Alu
chr3	179117128	T	C	0.00112	GNB4	-	TRUE	AluSz	SINE,Alu
chr1	15896199	G	A	0.00483	DNAJC16	+	FALSE	AluSp	SINE,Alu
chr1	179876988	C	G	0.00047	TOR1AIP1	+	FALSE
chr4	184238324	G	A	0.00870	WWC2	+	FALSE
chr17	65335430	T	C	0.00019	PSMD12	-	TRUE	AluSx	SINE,Alu
chr4	89181451	T	C	8.32748E-05	PPM1K	-	TRUE	AluSx1	SINE,Alu
chr10	1086797	A	C	0.00499	IDI2-AS1,IDI1	+,-	FALSE
chr1	42884086	G	T	0.00040	RIMKLA	+	FALSE
chr1	11347150	C	A	0.00366	UBIAD1	+	FALSE
chr1	77759578	A	G	0.00492	AK5	+	FALSE
chr3	57613144	T	C	0.00959	DENND6A,PDE12	+,-	FALSE	AluSz	SINE,Alu
chr17	65334767	T	C	3.33546E-08	PSMD12	-	TRUE	AluSq	SINE,Alu
chr1	6283296	T	C	0.00122	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	53289547	A	G	0.00646	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr1	94702991	G	C	0.00397	ARHGAP29	-	FALSE
chr5	14510067	G	T	0.00130	TRIO	+	FALSE
chr3	49396588	T	C	0.00239	RHOA	-	FALSE
chr4	139980667	G	T	0.00396	ELF2	-	FALSE
chr1	33324136	T	C	0.00739	S100PBP	+	FALSE
chr5	118729619	A	G	0.00586	TNFAIP8	+	FALSE
chr1	225974592	T	G	2.09928E-05	SRP9	+	FALSE	AluJr	SINE,Alu
chrX	102613351	A	G	0.00969	TCEAL9	+	FALSE	L1ME4a	SINE,Alu
chr2	99812465	A	G	0.00367	MRPL30	+	TRUE	AluSx	SINE,Alu
chr1	218617066	A	T	0.00036	TGFB2-OT1,TGFB2	+	FALSE
chr1	24022912	G	A	4.29449E-05	RPL11	+	FALSE
chr1	160967890	T	C	0.00871	F11R	-	TRUE	AluSp	SINE,Alu
chr7	55433884	A	C	0.00723	LANCL2	+	FALSE
chr2	110373919	G	A	0.00669	SOWAHC	+	FALSE
chr1	9989022	A	G	0.00616	LZIC	-	FALSE	L1MB5	SINE,Alu
chr2	183643241	C	A	0.00108	DNAJC10	+	FALSE
chr6	29910581	C	A	6.62336E-05		.	FALSE
chr1	65298625	G	A	0.00761	RAVER2	+	FALSE	X12_DNA	SINE,Alu
chr1	36067760	T	C	0.00032	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	19953130	T	A	0.00595	MINOS1,MINOS1-NBL1	+	FALSE
chr12	120898998	A	G	0.00081	GATC	+	TRUE	AluJr	SINE,Alu
chr1	16889014	C	T	0.00722	NBPF1	-	FALSE
chr1	100549715	T	A	0.00765	SASS6	-	FALSE
chr18	11852628	C	T	0.00048	GNAL,CHMP1B	+	FALSE
chr1	89447720	G	A	0.00029	KYAT3,RBMXL1	-	FALSE
chr1	145512024	A	G	0.00392	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	1595074	T	C	0.00296	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr1	28859264	T	G	0.00030	RCC1	+	FALSE
chr1	145281543	C	T	0.00028	NBPF20,NOTCH2NL	+	FALSE
chr1	10519064	T	C	0.00012		.	FALSE	AluSx3	SINE,Alu
chr1	52266242	G	A	0.00528	NRDC	-	FALSE
chr1	10519951	T	C	0.00378		.	FALSE	AluJr	SINE,Alu
chr4	2940085	T	C	0.00801	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	28662254	A	G	0.00290	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	155695998	A	G	0.00078	DAP3	+	TRUE	AluSp	SINE,Alu
chr17	7482325	T	A	5.04428E-06		.	FALSE
chr1	19585771	A	G	0.00029	MRTO4	+	FALSE	AluSc8	SINE,Alu
chr3	49395757	G	A	3.97123E-06	GPX1	-	FALSE
chr6	74346347	A	G	4.16931E-07	SLC17A5	-	FALSE
chr1	145513090	A	G	0.00017	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	145291217	C	T	0.00415	NBPF20	+	FALSE
chr17	37006214	T	C	0.00706		.	FALSE	AluSx	SINE,Alu
chr9	125887702	C	T	0.00019	STRBP	-	FALSE
chr3	129286413	G	C	2.51503E-06	PLXND1	-	FALSE
chrX	3523058	A	C	0.00019	PRKX	-	FALSE	(AC)n	SINE,Alu
chr4	88059664	T	G	0.00178	AFF1	+	FALSE	(GT)n	SINE,Alu
chr10	64911911	A	G	0.00908	NRBF2	+	FALSE
chr1	46076543	A	G	0.00989	NASP	+	TRUE	AluSx	SINE,Alu
chr2	37334139	T	C	0.00146	EIF2AK2	-	TRUE	AluSz	SINE,Alu
chr3	42253664	C	T	0.00065	TRAK1	+	FALSE
chr1	28661576	A	G	0.00625	MED18	+	TRUE	AluSg	SINE,Alu
chr1	149783886	C	T	0.00526	HIST2H2BF	-	FALSE
chr3	183900836	G	A	0.00658	AP2M1	+	FALSE
chr6	13788387	T	C	0.00240	MCUR1	-	TRUE	AluSx	SINE,Alu
chr1	24296869	G	T	0.00505		.	FALSE	AluSg	SINE,Alu
chr1	93803622	T	C	0.00096	CCDC18-AS1	-	TRUE	AluJr	SINE,Alu
chr3	44772983	C	T	0.00795	ZNF501	+	FALSE
chr5	125961918	G	A	0.00421	PHAX	+	FALSE	FLAM_C	SINE,Alu
chr1	3546136	A	G	2.71404E-05	TPRG1L	+	FALSE	AluSz	SINE,Alu
chr1	36067925	T	C	3.39837E-06	PSMB2	-	TRUE	AluSz	SINE,Alu
chr3	14986133	T	C	1.90274E-11	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	120267061	C	A	0.00181	PHGDH	+	FALSE
chr1	26608019	T	A	3.63623E-05		.	FALSE
chr1	154557171	G	A	0.00329	ADAR	-	FALSE	A-rich	SINE,Alu
chr9	19376252	A	T	0.00367		.	FALSE
chr3	15113716	T	C	2.87067E-10	RBSN	-	TRUE	AluSz6	SINE,Alu
chr10	101992425	T	C	0.00406	CWF19L1	-	TRUE	AluSq2	SINE,Alu
chr1	1595586	T	C	0.00096	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr1	46075188	C	A	0.00199	NASP	+	FALSE	A-rich	SINE,Alu
chr20	35521048	A	T	0.00727	TLDC2,SAMHD1	+,-	FALSE
chr1	32681795	C	T	0.00791	DCDC2B,TMEM234	+,-	FALSE
chr2	105964472	C	T	0.00398	C2orf49	+	FALSE	(TTTCTCC)n	SINE,Alu
chr9	91724517	C	T	0.00289	SHC3	-	FALSE
chr1	179326882	A	G	1.03454E-05	SOAT1	+	TRUE	AluJo	SINE,Alu
chr1	70718271	G	A	0.00273		.	FALSE
chr2	239360542	C	A	0.00989	ASB1	+	FALSE
chr12	49745431	A	G	0.00033	DNAJC22	+	TRUE	AluSx3	SINE,Alu
chr18	19445881	T	A	0.00224	MIB1	+	FALSE
chr15	49419124	T	C	1.84263E-05	COPS2	-	TRUE	MARNA	SINE,Alu
chr1	54412181	T	C	0.00524	LRRC42	+	FALSE
chr1	153920564	A	G	0.00323	CRTC2	-	FALSE
chr8	100890376	G	T	0.00920	COX6C	-	FALSE
chr1	109475629	A	G	0.00305	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr8	30536146	T	C	1.15312E-06	GSR	-	TRUE	AluJr	SINE,Alu
chr5	178293266	G	A	0.00924	ZNF354B	+	FALSE
chr6	42856176	A	G	0.00202	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr5	151041877	C	A	1.29615E-05	SPARC	-	FALSE
chr3	44791553	T	C	0.00298	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr1	179070646	T	C	0.00283	ABL2	-	TRUE	AluSz	SINE,Alu
chr4	128756632	A	G	0.00602		.	FALSE	AluSx	SINE,Alu
chr3	12624321	A	G	2.86985E-06	MKRN2	+	FALSE
chr4	17802919	T	C	0.00857	DCAF16	-	TRUE	AluSz	SINE,Alu
chr15	49454018	C	T	0.00053	GALK2	+	FALSE	AluSx1	SINE,Alu
chr1	10519888	T	C	0.00666		.	FALSE	AluJr	SINE,Alu
chr19	45406537	T	C	0.00278	TOMM40	+	FALSE
chrM	9756	G	A	0.00315		.	FALSE
chr1	28662053	G	A	0.00158	MED18	+	FALSE	AluSq2	SINE,Alu
chr1	113240711	G	A	0.00454	MOV10	+	FALSE
chr17	73886249	T	C	0.00069	TRIM65	-	TRUE	FRAM	SINE,Alu
chr3	52237970	C	T	0.00017	ALAS1	+	FALSE
chr20	10036845	A	G	0.00110	SNAP25-AS1,ANKEF1	+,-	FALSE
chr1	16927369	C	T	0.00943	NBPF1	-	FALSE
chr2	220037666	A	G	0.00796	CNPPD1	-	FALSE
chr1	109818160	T	G	0.00745	CELSR2	+	FALSE
chr1	39470978	T	A	0.00378	AKIRIN1	+	FALSE	AluSx1	SINE,Alu
chr1	10517688	T	C	0.00020		.	FALSE	AluSx1	SINE,Alu
chr6	47592459	A	G	0.00789	CD2AP	+	FALSE
chr1	207250570	A	G	0.00486	PFKFB2	+	FALSE
chr1	214524566	T	C	0.00040	PTPN14	-	TRUE	AluSg	SINE,Alu
chr20	35410314	T	C	0.00602	SOGA1	-	TRUE	AluSz	SINE,Alu
chr2	84670484	T	C	0.00324	SUCLG1	-	TRUE
chr5	175811093	A	G	0.00730	NOP16	-	FALSE
chr1	28826118	A	G	0.00039	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr3	5259480	T	A	5.79324E-05	EDEM1	+	FALSE
chr3	152555188	G	T	0.00016	P2RY1	+	FALSE
chr3	47036756	C	G	0.00091	NBEAL2	+	FALSE
chr1	134370	T	C	0.00327		.	FALSE	AluSg	SINE,Alu
chr1	10517526	T	C	0.00364		.	FALSE	AluSx1	SINE,Alu
chr4	42091668	A	G	0.00430		.	FALSE	AluSp	SINE,Alu
chr1	20978457	T	C	0.00036	PINK1-AS,DDOST	-	TRUE	AluY	SINE,Alu
chr1	160175191	A	C	0.00509	LOC729867,PEA15	+,-	FALSE	(GGC)n	SINE,Alu
chr7	38764358	T	C	0.00675	VPS41	-	TRUE	AluSp	SINE,Alu
chr1	36067760	T	C	0.00052	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	6585215	C	T	0.00286	NOL9	-	FALSE	FAM	SINE,Alu
chr1	6282224	T	C	0.00062	ICMT	-	TRUE	AluSz	SINE,Alu
chr15	63616881	G	A	0.00026	CA12	-	FALSE
chr1	148556087	G	C	0.00106		.	FALSE
chr19	8005999	T	C	0.00027	TIMM44	-	FALSE
chr12	32532499	A	T	0.00119		.	FALSE
chr10	22824829	T	C	0.00207	PIP4K2A	-	FALSE
chr22	17129526	A	G	0.00485	TPTEP1	+	TRUE	AluSz	SINE,Alu
chr2	3597974	T	C	1.93309E-05	RNASEH1	-	FALSE
chr2	46852033	A	G	0.00543	CRIPT	+	FALSE
chr1	327407	A	G	3.55459E-07		.	FALSE
chr5	125961611	A	G	0.00113	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	6283306	T	C	0.00047	ICMT	-	TRUE	AluSx3	SINE,Alu
chr5	145666114	G	T	0.00766	RBM27	+	FALSE
chr1	50883798	T	C	0.00156	DMRTA2	-	FALSE
chr1	33148210	A	G	0.00778	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	153617973	A	G	4.00129E-07	CHTOP	+	FALSE
chr1	6282371	T	C	0.00013	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	35649804	C	A	0.00127	SFPQ	-	FALSE
chr5	125961455	A	G	0.00029	PHAX	+	TRUE	AluSz6	SINE,Alu
chr4	185309396	G	A	0.00199	IRF2	-	FALSE	(GGGAT)n	SINE,Alu
chr1	10520331	C	T	2.36721E-05		.	FALSE	AluSx1	SINE,Alu
chr19	1457883	C	G	2.74690E-05	APC2	+	FALSE
chr4	95173779	T	C	0.00771	SMARCAD1	+	FALSE
chr1	28835847	A	G	5.60567E-05	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr14	95572111	A	C	0.00409	DICER1	-	FALSE
chrX	123045405	A	G	0.00551	XIAP	+	TRUE	AluJo	SINE,Alu
chr6	44417182	A	G	0.00018	CDC5L	+	TRUE	FLAM_C	SINE,Alu
chr1	180167090	C	T	0.00607	QSOX1	+	FALSE
chr3	52084404	A	T	0.00032	DUSP7	-	FALSE	(A)n	SINE,Alu
chr2	23926233	C	T	0.00907	KLHL29	+	FALSE
chr1	59148136	T	C	0.00244	MYSM1	-	FALSE
chr16	75479467	T	C	0.00160	TMEM170A	-	TRUE	AluJb	SINE,Alu
chr15	31231255	A	G	0.00027	FAN1,MTMR10	+,-	FALSE
chr1	16932429	C	G	0.00106	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr2	98409998	G	T	0.00261	TMEM131	-	FALSE
chr6	71299074	A	G	0.00824		.	FALSE	AluSx1	SINE,Alu
chr1	161488017	T	C	5.55712E-05	FCGR2A	+	FALSE	MER57F	SINE,Alu
chr1	45976722	G	T	0.00292	MMACHC,PRDX1	+,-	FALSE
chr4	188925184	G	A	0.00032	ZFP42	+	FALSE
chr1	95658358	T	C	0.00633	TMEM56-RWDD3,LOC101928118,TMEM56	+,-	FALSE
chr5	87566382	T	A	0.00997	TMEM161B-AS1	+	FALSE
chr1	155161736	G	A	0.00088	MUC1	-	FALSE
chr1	16933753	G	A	0.00609	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr1	33148706	A	G	0.00087	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	201845882	G	A	0.00890	IPO9	+	FALSE
chr1	120166681	G	A	0.00241	ZNF697	-	FALSE
chr1	53679610	G	A	0.00084	CPT2	+	FALSE	AluSz	SINE,Alu
chr3	45960578	G	A	0.00632	FYCO1	-	FALSE
chr3	44791355	T	C	0.00468	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr16	81064560	A	G	0.00014	CENPN	+	TRUE	AluSg	SINE,Alu
chr1	16889413	T	C	0.00016	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr3	53265957	T	C	0.00493	TKT	-	FALSE
chr1	16945027	T	C	2.31134E-07	CROCCP2	-	FALSE	L1ME3Cz	SINE,Alu
chr7	100279138	A	T	0.00741	GIGYF1	-	FALSE	A-rich	SINE,Alu
chr5	79923788	T	C	0.00693	DHFR	-	TRUE	AluSp	SINE,Alu
chr6	33384326	A	T	0.00678		.	FALSE
chr3	172224303	A	G	0.00524	TNFSF10	-	FALSE
chr1	92946618	A	G	0.00062	GFI1	-	FALSE
chr1	31346203	A	C	0.00050	SDC3	-	FALSE
chr3	155660961	A	G	6.62819E-05		.	FALSE	AluSz	SINE,Alu
chr7	300512	G	A	3.09252E-06	FAM20C	+	FALSE
chr1	1152309	A	T	0.00035	SDF4	-	FALSE
chr9	131872860	C	T	0.00141	CRAT	-	FALSE
chr1	120695049	G	A	0.00129		.	FALSE
chr6	25986717	A	G	0.00217	TRIM38	+	TRUE	AluJb	SINE,Alu

RBP	DDX21
Knock-Method	shRNA
RBP Family	DEAD
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR485ZTC
Platform	HiSeq
Pubmed ID	32252787

DDX21 - Target Gene Network