RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	154987526	C	T	0.00043	ZBTB7B	+	FALSE
chr10	104417856	T	A	0.00616	TRIM8	+	FALSE	(AAT)n	SINE,Alu
chr1	1593023	G	C	2.84325E-05	CDK11B,SLC35E2B	-	FALSE
chr1	67874689	T	C	3.52759E-06	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	19585771	A	G	0.00029	MRTO4	+	FALSE	AluSc8	SINE,Alu
chr17	34942575	G	A	0.00374	GGNBP2	+	FALSE	A-rich	SINE,Alu
chr2	32532809	A	G	0.00255		.	FALSE	AluSx1	SINE,Alu
chr1	32833541	T	C	0.00903	BSDC1	-	TRUE
chr5	170837892	C	A	0.00725		.	FALSE
chr1	109474776	A	G	0.00088	GPSM2,CLCC1	+,-	FALSE	AluSz	SINE,Alu
chr15	41591457	A	G	1.25234E-05	OIP5-AS1	+	TRUE	AluSx	SINE,Alu
chr1	53289686	A	G	0.00460	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr1	155695968	A	G	0.00017	DAP3	+	TRUE	AluSp	SINE,Alu
chr1	15394286	C	G	0.00260	KAZN	+	FALSE
chr1	109818160	T	G	3.82986E-06	CELSR2	+	FALSE
chr5	52389811	T	G	0.00561	ITGA2	+	FALSE
chr2	102508655	G	T	0.00817	MAP4K4	+	FALSE
chr1	109465167	T	A	0.00233	GPSM2	+	FALSE
chr1	47716043	A	G	0.00794	STIL	-	FALSE
chr1	33148706	A	G	0.00050	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	38275802	T	C	2.04657E-06	MTF1	-	FALSE
chr5	172396725	T	A	0.00014	RPL26L1	+	FALSE
chr9	139417333	G	A	0.00463	NOTCH1	-	FALSE
chr1	47844500	T	G	0.00169	CMPK1	+	FALSE
chr4	2940485	T	C	0.00676	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr15	74319092	A	G	0.00029	PML	+	TRUE	AluSz6	SINE,Alu
chr2	216903621	T	C	0.00611	PECR	-	TRUE	AluSx3	SINE,Alu
chr1	36752811	C	T	0.00000	THRAP3	+	FALSE
chr1	74672474	G	A	0.00441	FPGT-TNNI3K,FPGT	+	FALSE	X12_DNA	SINE,Alu
chr1	207247475	C	A	0.00680	PFKFB2	+	FALSE	MER5B	SINE,Alu
chrX	9686187	T	C	0.00420	TBL1X	+	FALSE
chr19	57816261	A	G	0.00156		.	FALSE	AluY	SINE,Alu
chr5	10265488	A	G	0.00120	CCT5	+	FALSE
chr3	137787192	T	C	0.00764	DZIP1L	-	FALSE
chr1	20976843	G	C	0.00202	PINK1,PINK1-AS	+,-	FALSE
chr1	100657416	C	T	0.00102	DBT	-	FALSE	AluJb	SINE,Alu
chr5	130536842	A	G	0.00016	LYRM7	+	TRUE	AluSx4	SINE,Alu
chr4	113108680	A	G	0.00109	C4orf32	+	FALSE
chr21	34730077	A	G	0.00019	IFNAR1	+	TRUE	AluSg7	SINE,Alu
chr5	149361415	A	G	0.00290	SLC26A2	+	TRUE
chr1	46117185	C	T	0.00714	GPBP1L1	-	FALSE
chr6	31324110	G	A	0.00521		.	FALSE
chr11	94801637	T	C	0.00726	SRSF8	+	FALSE
chr1	10043527	A	G	0.00811	NMNAT1	+	TRUE	AluSx3	SINE,Alu
chr1	3654747	C	A	0.00691	TP73-AS1	-	FALSE
chr2	110373919	G	A	0.00669	SOWAHC	+	FALSE
chr2	37478348	T	A	0.00392	PRKD3	-	FALSE
chr1	16946437	C	T	0.00257	CROCCP2	-	FALSE
chr1	230416412	C	G	0.00514	GALNT2	+	FALSE
chr7	36447358	G	C	0.00838	ANLN	+	FALSE
chr1	158066834	A	G	0.00609	KIRREL	+	FALSE
chr1	6582161	T	C	0.00697	NOL9	-	TRUE	AluSq4	SINE,Alu
chr1	117618067	C	T	0.00118	TTF2	+	FALSE
chr3	160213317	T	A	0.00208	KPNA4	-	FALSE
chr19	39440966	T	C	0.00011	FBXO17	-	FALSE
chr1	6704635	A	G	0.00978	DNAJC11	-	FALSE
chr1	211921702	T	C	0.00014	LPGAT1	-	FALSE
chr1	11982580	G	A	2.06927E-05	KIAA2013	-	FALSE
chr15	90764219	G	A	0.00193	SEMA4B	+	FALSE
chr1	44447004	G	A	0.00767	B4GALT2	+	FALSE	(CAG)n	SINE,Alu
chr1	65897981	G	A	0.00071	LEPR,LEPROT	+	FALSE
chr19	4428790	A	T	0.00000	CHAF1A	+	FALSE
chr2	11426734	T	C	4.76290E-06	ROCK2	-	FALSE
chr3	5258985	T	C	0.00436	EDEM1	+	FALSE
chr1	92975244	T	A	0.00220	EVI5	-	FALSE
chr1	10490539	G	C	0.00134	APITD1,APITD1-CORT	+	FALSE
chr1	144931727	G	A	0.00211	NBPF20,PDE4DIP	+,-	FALSE
chr1	19585519	A	G	3.44907E-05	MRTO4	+	TRUE	AluSc8	SINE,Alu
chr17	76626300	C	T	0.00097	LOC101928710	-	FALSE
chr16	19715588	T	C	0.00063		.	FALSE	AluSg	SINE,Alu
chr1	145290818	C	G	0.00931	NBPF20	+	FALSE
chr1	144932086	G	C	0.00997	NBPF20,PDE4DIP	+,-	FALSE
chr1	44402565	G	A	0.00010	ARTN	+	FALSE
chr3	40578941	A	G	0.00293	ZNF621	+	TRUE	AluJr	SINE,Alu
chr7	65992794	T	C	0.00820		.	FALSE	AluJr	SINE,Alu
chr1	159946783	A	G	0.00097	LINC01133	+	FALSE	(GAAA)n	SINE,Alu
chr2	37327670	T	C	0.00297		.	FALSE
chr17	65334725	T	C	2.56338E-07	PSMD12	-	TRUE	AluSq	SINE,Alu
chr3	14986150	T	C	7.09959E-07	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr2	206988452	A	T	0.00669	NDUFS1	-	FALSE
chr12	133298938	A	G	0.00034	PGAM5	+	TRUE	AluSg	SINE,Alu
chr9	136209397	G	C	0.00709	MED22	-	FALSE
chr7	44839297	A	T	0.00777	PPIA	+	FALSE
chr7	64435678	T	A	0.00256	ZNF117	-	FALSE
chr1	16889639	T	C	0.00524	NBPF1	-	TRUE
chr1	46164493	T	C	0.00330	IPP	-	TRUE	AluJb	SINE,Alu
chr4	119555142	A	G	4.95460E-05	LOC729218	+	FALSE
chr1	32508534	A	G	0.00666	KHDRBS1	+	FALSE
chr1	154440548	G	T	0.00123	IL6R	+	FALSE	(TTGTT)n	SINE,Alu
chr3	179042832	A	G	0.00308	ZNF639	+	TRUE	AluSp	SINE,Alu
chr1	21810575	T	C	0.00827	NBPF3	+	FALSE
chr1	28662199	A	G	7.40709E-05	MED18	+	TRUE	AluSq2	SINE,Alu
chr4	129795663	T	A	0.00165	JADE1	+	FALSE
chr3	196728813	C	T	0.00068	MELTF	-	FALSE
chr1	33150643	G	A	0.00606	SYNC,RBBP4	+,-	FALSE	AluJo	SINE,Alu
chr1	3545191	C	T	0.00597	TPRG1L	+	FALSE
chr10	13234356	A	T	3.19668E-07	MCM10	+	FALSE
chr1	109535117	C	T	0.00211	WDR47	-	FALSE
chr17	73940918	T	C	6.48265E-05	ACOX1	-	TRUE	AluSx1	SINE,Alu
chr1	142688506	T	C	4.54862E-05		.	FALSE
chr14	75202544	A	G	3.08187E-07	FCF1	+	TRUE	AluSc	SINE,Alu
chr1	9160989	T	C	0.00041		.	FALSE	AluJb	SINE,Alu
chr15	30781885	C	T	0.00380		.	FALSE
chr6	29910557	T	A	0.00196		.	FALSE
chr1	23409538	G	A	0.00464	KDM1A	+	FALSE
chr1	43309548	G	A	0.00764	ERMAP	+	FALSE
chr1	155695998	A	G	0.00574	DAP3	+	TRUE	AluSp	SINE,Alu
chr2	28002602	C	A	0.00037	MRPL33	+	FALSE
chr16	3207362	A	T	1.09222E-05		.	FALSE
chr1	153700841	A	G	0.00508	INTS3	+	FALSE
chr1	11979815	A	C	0.00274	KIAA2013	-	FALSE
chr1	6282420	T	C	0.00779	ICMT	-	TRUE	AluSz	SINE,Alu
chr12	120898728	A	G	0.00566	GATC	+	TRUE	AluY	SINE,Alu
chr1	94351063	A	T	0.00907	GCLM	-	FALSE
chr1	120163520	T	C	0.00017	ZNF697	-	FALSE
chr1	11347150	C	A	0.00366	UBIAD1	+	FALSE
chr3	191075902	C	T	1.38271E-08	CCDC50	+	FALSE
chr8	23294732	C	T	0.00415	ENTPD4	-	FALSE
chr1	40975260	G	C	0.00902	EXO5	+	FALSE
chr1	93827764	A	G	0.00098	DR1	+	FALSE
chr17	56081432	G	A	4.92367E-05	SRSF1	-	FALSE
chr2	10711446	T	C	0.00014	NOL10	-	FALSE	MSTA	SINE,Alu
chr1	42884086	G	T	0.00040	RIMKLA	+	FALSE
chr6	42856118	A	G	0.00743	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr5	125961487	A	G	0.00776	PHAX	+	FALSE	AluSz6	SINE,Alu
chr1	148556087	G	C	0.00106		.	FALSE
chr1	19543457	T	C	0.00143	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	120539711	G	T	0.00627	NOTCH2	-	FALSE
chr1	149913731	T	C	0.00198	OTUD7B	-	TRUE	MER96B	SINE,Alu
chr19	24104018	A	G	0.00543	ZNF726	+	FALSE	AluSg4	SINE,Alu
chr3	10193683	T	G	0.00681	VHL	+	FALSE	AluJr	SINE,Alu
chr5	56177850	A	T	0.00856	MAP3K1	+	FALSE	(CAA)n	SINE,Alu
chr2	110842200	C	A	0.00131	MALL	-	FALSE
chr3	127341226	A	G	0.00049	MCM2	+	FALSE
chr1	24288530	A	T	0.00915	PNRC2	+	FALSE
chr2	27315252	G	A	0.00377	KHK	+	FALSE
chr1	160302244	T	C	0.00310	COPA	-	TRUE
chr3	14239845	G	A	0.00375	LSM3	+	FALSE
chr1	22854931	C	A	7.08508E-09	ZBTB40	+	FALSE	A-rich	SINE,Alu
chr1	155039464	C	T	2.82294E-06	EFNA4	+	FALSE
chr3	15112631	A	G	0.00019	RBSN	-	FALSE
chr6	133135886	A	G	0.00629	RPS12	+	FALSE
chr1	3545183	A	T	0.00347	TPRG1L	+	FALSE
chr1	10517525	T	C	0.00775		.	FALSE	AluSx1	SINE,Alu
chr3	58292297	T	C	0.00950	RPP14	+	FALSE
chr1	25169634	A	G	0.00531	CLIC4	+	FALSE
chr1	142804438	G	T	0.00618		.	FALSE
chr1	33148367	C	G	0.00020	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr2	37430603	T	C	0.00483	CEBPZOS,CEBPZ	+,-	FALSE
chr6	42857057	A	G	0.00020	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr12	69160574	A	G	0.00891		.	FALSE	AluJb	SINE,Alu
chr12	125512540	A	G	7.43833E-09		.	FALSE
chr1	20978457	T	C	0.00036	PINK1-AS,DDOST	-	TRUE	AluY	SINE,Alu
chr19	53914418	A	G	0.00891	ZNF765	+	TRUE	AluSx	SINE,Alu
chr3	195776630	T	A	7.10429E-08	TFRC	-	FALSE
chr11	71943768	G	T	1.87744E-06	INPPL1	+	FALSE
chr1	9160982	T	C	0.00695		.	FALSE	AluJb	SINE,Alu
chr9	136209402	A	G	0.00431	MED22	-	FALSE	(CAGGG)n	SINE,Alu
chr1	65696034	G	C	0.00803	AK4	+	FALSE
chr3	194124624	C	T	0.00502	ATP13A3	-	FALSE
chr1	26606589	C	G	0.00420	SH3BGRL3	+	FALSE
chr1	52498140	G	A	0.00044	TXNDC12,KTI12	-	FALSE
chr1	92862682	A	G	0.00381		.	FALSE	AluJr	SINE,Alu
chr1	24710405	A	G	0.00246	STPG1	-	FALSE
chr1	11347164	A	C	0.00667	UBIAD1	+	FALSE
chr1	146467146	A	G	0.00510	NBPF20,NBPF25P,NBPF12	+	TRUE	L1MC4	SINE,Alu
chr1	59120961	G	A	0.00383	MYSM1	-	FALSE
chr4	103183510	C	T	0.00718	SLC39A8	-	FALSE
chr1	109818270	C	T	0.00996	CELSR2	+	FALSE
chr5	61683960	A	G	0.00491		.	FALSE
chr1	53708528	T	C	0.00057	LRP8	-	FALSE	(TA)n	SINE,Alu
chr3	191114266	T	C	0.00258	CCDC50	+	FALSE
chrX	23721422	A	C	0.00160		.	FALSE
chr7	295960	T	A	2.17882E-07	FAM20C	+	FALSE
chr1	117530273	A	G	0.00270	PTGFRN	+	FALSE
chr6	150047420	T	C	2.23465E-06	NUP43	-	TRUE	AluSc	SINE,Alu
chr1	26608008	T	A	0.00496	SH3BGRL3	+	FALSE
chr1	26143725	A	T	0.00291	SEPN1	+	FALSE	AluSx	SINE,Alu
chr2	202028727	A	G	0.00833	CFLAR	+	TRUE	AluSx1	SINE,Alu
chr1	27202835	T	C	0.00094		.	FALSE	AluSq2	SINE,Alu
chr3	5026730	T	C	0.00488	BHLHE40	+	FALSE
chr1	20224152	G	A	0.00581	OTUD3	+	FALSE
chr14	70838268	T	C	0.00365	SYNJ2BP-COX16,SYNJ2BP	-	TRUE	AluSg	SINE,Alu
chr3	46007825	T	C	4.58354E-06	FYCO1	-	FALSE
chr1	47905554	C	G	0.00297	FOXD2	+	FALSE
chr1	33148196	A	G	0.00303	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr5	114541533	T	C	0.00957		.	FALSE	L1ME3A	SINE,Alu
chr4	9909923	G	A	0.00416	SLC2A9	-	FALSE
chr1	1018144	T	C	0.00019	C1orf159	-	FALSE
chr3	150261569	T	G	0.00173	SERP1	-	FALSE
chr3	69151152	C	A	0.00750	ARL6IP5	+	FALSE
chr2	217366803	A	G	0.00914		.	FALSE	AluSz6	SINE,Alu
chr19	23542304	T	C	2.38814E-05	ZNF91	-	TRUE	AluY	SINE,Alu
chr1	10518734	T	C	0.00143		.	FALSE	AluSx1	SINE,Alu
chr5	125961447	A	G	0.00563	PHAX	+	TRUE	AluSz6	SINE,Alu
chr16	89630630	C	T	0.00296	RPL13	+	FALSE
chr10	98278593	A	T	0.00792	TM9SF3	-	FALSE
chr4	247533	A	G	0.00972	ZNF876P	+	FALSE
chr1	144828707	G	T	0.00504	NBPF20,NBPF9	+	FALSE
chr4	7761114	G	A	8.00249E-13	AFAP1,AFAP1-AS1	+,-	FALSE
chrX	135300092	T	C	0.00075	MAP7D3	-	TRUE	AluSz	SINE,Alu
chr1	214531079	A	G	0.00124	PTPN14	-	FALSE
chr6	153292178	C	T	0.00783	FBXO5	-	FALSE
chr1	229586611	T	C	0.00794	NUP133	-	TRUE	AluSz	SINE,Alu
chr3	10302056	A	G	0.00018	TATDN2	+	FALSE
chr1	45120664	C	T	0.00437	TMEM53	-	FALSE
chr1	53378536	T	C	0.00075	ECHDC2	-	TRUE	AluSp	SINE,Alu
chr1	16944809	G	C	9.47535E-05	CROCCP2	-	FALSE
chr2	176791182	T	C	0.00015	LNPK	-	TRUE	MSTD	SINE,Alu
chr7	300512	G	A	3.09252E-06	FAM20C	+	FALSE
chr1	11722350	C	A	0.00355	FBXO44	+	FALSE	OldhAT1	SINE,Alu
chr3	48786991	T	C	0.00584	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr4	71682381	T	C	0.00037	GRSF1	-	TRUE	AluSz6	SINE,Alu
chr2	101622883	T	A	0.00440	RPL31	+	FALSE
chr1	26608018	G	A	2.25777E-05		.	FALSE
chr1	19542401	T	C	0.00052	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr10	13320129	A	G	0.00830	PHYH	-	FALSE
chr5	145838680	A	G	0.00395	TCERG1	+	FALSE	(GCCCAG)n	SINE,Alu
chr20	309186	A	G	0.00665	SOX12	+	FALSE	A-rich	SINE,Alu
chr2	217366919	A	G	0.00480		.	FALSE	AluSz6	SINE,Alu
chr2	62095566	C	T	0.00471	CCT4	-	FALSE
chr1	93307479	C	A	0.00085	FAM69A,RPL5	+,-	FALSE
chr1	169101257	A	T	0.00144	ATP1B1	+	FALSE
chr1	1595388	A	G	0.00135	CDK11B,SLC35E2B	-	FALSE	AluJr	SINE,Alu
chr8	144827207	A	T	0.00038	FAM83H-AS1	+	FALSE	ERVL-B4-int	SINE,Alu
chr2	220422583	G	A	0.00089	OBSL1	-	FALSE
chr4	7761567	C	G	1.89283E-11	AFAP1,AFAP1-AS1	+,-	FALSE
chr2	101623611	A	C	0.00826	RPL31	+	FALSE
chr1	11347150	C	A	0.00016	UBIAD1	+	FALSE
chr1	36067886	T	C	0.00150	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	144619903	T	A	0.00712	NBPF20,NBPF9	+	FALSE
chr1	45671434	G	C	0.00819	ZSWIM5	-	FALSE
chr8	133837579	G	A	0.00019	PHF20L1	+	FALSE	A-rich	SINE,Alu
chr9	28607	T	C	0.00146	WASH1	-	FALSE
chr14	53242746	T	C	0.00051	GNPNAT1	-	TRUE	AluJr	SINE,Alu
chr1	200827638	A	G	0.00665	CAMSAP2	+	FALSE
chr1	1594498	C	T	0.00024	CDK11B,SLC35E2B	-	FALSE
chr1	9162223	T	C	0.00778		.	FALSE	AluSx	SINE,Alu
chr15	33064461	C	T	0.00653	FMN1	-	FALSE
chr1	59124223	G	A	0.00327	MYSM1	-	FALSE	MIR3	SINE,Alu
chr1	144053567	C	T	0.00037		.	FALSE
chr1	16933327	C	T	6.62916E-05	NBPF1	-	FALSE
chr5	64964627	T	C	2.01273E-05	SGTB	-	TRUE	AluSx1	SINE,Alu
chr3	194361768	C	T	1.49766E-06	LSG1	-	FALSE	MSTA	SINE,Alu
chr6	134492481	A	C	0.00340	SGK1	-	FALSE
chr1	145689843	A	G	4.95254E-05	NBPF20,NBPF10	+	TRUE	AluJb	SINE,Alu
chr1	10042988	A	G	4.26240E-05	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr1	95658344	G	A	0.00100	TMEM56-RWDD3,LOC101928118,TMEM56	+,-	FALSE
chr1	6948076	C	T	0.00221	CAMTA1	+	FALSE	L2a	SINE,Alu
chr3	27674782	A	G	0.00630		.	FALSE

RBP	UTP18
Knock-Method	shRNA
RBP Family	Non-canonical_RBP
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR269ZAO
Platform	HiSeq
Pubmed ID	32252787

UTP18 - Target Gene Network