RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	109181308	T	A	0.00756	FAM102B	+	FALSE
chr1	44071221	G	A	0.00105	PTPRF	+	FALSE
chr1	39908506	G	A	0.00079	MACF1	+	FALSE
chr1	28800380	C	A	0.00709	PHACTR4	+	FALSE
chr10	98281496	T	C	0.00509	TM9SF3	-	FALSE
chr1	40435513	C	A	0.00656	MFSD2A	+	FALSE
chr2	37518045	G	C	0.00342	PRKD3	-	FALSE
chr1	22161275	G	A	0.00600	HSPG2	-	FALSE
chr1	144852167	G	T	0.00352	NBPF20,PDE4DIP	+,-	FALSE
chr1	240255561	G	A	0.00224	FMN2	+	FALSE	(GGC)n	SINE,Alu
chr1	16929100	C	T	0.00348	NBPF1	-	FALSE	LTR16B2	SINE,Alu
chr1	25687621	A	T	0.00256	TMEM50A	+	FALSE
chr19	33470874	A	G	0.00119	RHPN2	-	FALSE
chr1	21101369	T	C	0.00244	HP1BP3	-	TRUE	AluSc	SINE,Alu
chr2	86364710	T	C	0.00273	PTCD3	+	FALSE
chr1	53289892	A	G	0.00178	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr1	46164493	T	C	0.00977	IPP	-	TRUE	AluJb	SINE,Alu
chr2	102508658	T	A	0.00275	MAP4K4	+	FALSE
chr1	28929961	T	A	0.00068	TAF12	-	FALSE
chr2	203430456	T	G	0.00162	BMPR2	+	FALSE
chr7	38764358	T	C	0.00675	VPS41	-	TRUE	AluSp	SINE,Alu
chr4	128756632	A	G	0.00602		.	FALSE	AluSx	SINE,Alu
chr4	88059194	C	T	0.00681	AFF1	+	FALSE
chr4	57326873	A	G	0.00342	PAICS	+	TRUE	AluSx1	SINE,Alu
chr1	179044169	A	G	0.00039	FAM20B	+	TRUE	AluSx	SINE,Alu
chr11	65179815	C	A	0.00447	FRMD8	+	FALSE
chr1	9161245	T	C	0.00480		.	FALSE	AluSx	SINE,Alu
chr1	35652608	A	G	0.00026	SFPQ	-	FALSE
chr2	203744550	T	C	0.00037		.	FALSE	AluSx1	SINE,Alu
chr1	206579798	T	C	0.00883	SRGAP2	+	FALSE
chr1	160967848	T	C	0.00200	F11R	-	TRUE	AluSp	SINE,Alu
chr2	128620436	C	T	0.00342	AMMECR1L	-	FALSE
chr2	74349080	A	G	0.00094		.	FALSE	AluSz	SINE,Alu
chr1	200375837	T	G	0.00490	ZNF281	-	FALSE	(T)n	SINE,Alu
chrX	54587254	A	G	0.00019	GNL3L	+	TRUE	AluSq2	SINE,Alu
chr1	1647814	T	C	7.10450E-06	CDK11B,CDK11A	-	FALSE
chr1	74665493	G	A	7.81871E-05	FPGT-TNNI3K,FPGT	+	FALSE
chr3	52873072	A	C	0.00233	TMEM110-MUSTN1,TMEM110	-	FALSE
chr1	119693495	A	G	0.00996	LOC101929147	+	TRUE	AluSx	SINE,Alu
chr1	205737682	A	G	0.00320	RAB29	-	FALSE	AluSq2	SINE,Alu
chr8	128944717	G	T	0.00091	PVT1	+	FALSE
chr3	196662641	T	C	0.00089	NCBP2	-	FALSE
chr4	42003671	A	G	0.00535	SLC30A9	+	FALSE
chr10	117823566	G	T	0.00433	GFRA1	-	FALSE	(ATC)n	SINE,Alu
chr1	35816903	C	T	0.00174	ZMYM4	+	FALSE
chr1	28836975	A	G	0.00023	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr1	142688707	A	C	0.00504		.	FALSE
chr14	75202532	A	G	1.20675E-07	FCF1	+	TRUE	AluSc	SINE,Alu
chr1	75171751	T	C	0.00100	CRYZ	-	FALSE
chr1	45242978	A	G	0.00604	RPS8	+	TRUE	AluSz	SINE,Alu
chr5	130540369	C	A	0.00126	LYRM7	+	FALSE	Tigger4a	SINE,Alu
chr6	24780892	A	C	0.00246	GMNN	+	FALSE
chr1	1572530	A	C	0.00425	CDK11B	-	FALSE
chr1	113212976	C	T	0.00904	CAPZA1	+	FALSE
chr2	224622242	T	C	0.00873	AP1S3	-	TRUE	AluSx1	SINE,Alu
chr1	53679610	G	A	0.00217	CPT2	+	FALSE	AluSz	SINE,Alu
chr1	35658260	C	G	0.00477	SFPQ	-	FALSE
chr1	160966353	T	C	0.00011	F11R	-	TRUE	AluSg	SINE,Alu
chr1	204525548	A	G	0.00027	MDM4	+	TRUE	AluSz	SINE,Alu
chr1	200375418	C	T	0.00425	ZNF281	-	FALSE
chr3	119212009	G	A	0.00241	POGLUT1	+	FALSE
chr1	92975262	C	A	0.00238	EVI5	-	FALSE
chr1	16945452	C	T	0.00184	CROCCP2	-	FALSE
chr1	36068237	T	C	0.00075	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	36282608	G	T	0.00886	AGO4	+	FALSE
chr2	200792307	G	A	0.00596	C2orf69	+	FALSE
chr19	49468569	G	T	0.00266	FTL	+	FALSE
chr8	30536151	T	C	5.90006E-09	GSR	-	TRUE	AluJr	SINE,Alu
chr1	3729217	T	C	0.00119	CEP104	-	TRUE	AluSx3	SINE,Alu
chr1	220231946	T	C	0.00439	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr1	1650801	T	C	0.00761	CDK11B,CDK11A	-	FALSE
chr19	59095456	A	G	0.00125	CENPBD1P1	+	TRUE	AluJb	SINE,Alu
chr1	204189357	C	T	0.00835	PLEKHA6	-	FALSE
chr2	8823958	G	A	0.00017	ID2	+	FALSE
chr1	161160459	T	C	0.00270	ADAMTS4	-	FALSE	(CA)n	SINE,Alu
chr1	145369480	A	G	7.08400E-07	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr17	10578246	A	G	0.00093		.	FALSE
chr12	69237020	A	G	0.00378	MDM2	+	TRUE
chrX	123043142	A	G	0.00045	XIAP	+	TRUE	AluSz	SINE,Alu
chr1	145689693	A	G	0.00088	NBPF20,NBPF10	+	TRUE	AluJb	SINE,Alu
chr2	237035915	C	G	0.00348	AGAP1	+	FALSE
chr1	1594977	T	C	0.00314	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr12	56510710	A	C	0.00050	RPL41	+	FALSE
chr2	109401286	G	T	0.00087	RANBP2	+	FALSE
chr10	77807027	T	C	0.00089	C10orf11	+	FALSE
chr5	55235967	A	G	0.00639	IL6ST	-	FALSE	(AT)n	SINE,Alu
chr1	145512014	A	G	0.00144	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr12	9395329	G	A	0.00814	LINC00987	+	FALSE
chr2	99813015	A	G	0.00235	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	6282420	T	C	0.00133	ICMT	-	TRUE	AluSz	SINE,Alu
chr14	90509582	T	C	0.00017	TDP1	+	FALSE
chr2	91847987	C	G	0.00083		.	FALSE	TAR1	SINE,Alu
chr3	195412715	T	C	0.00837	SDHAP2	+	FALSE
chr2	98388811	C	G	0.00123	TMEM131	-	FALSE
chr7	100860467	C	G	0.00267	PLOD3	-	FALSE
chr1	2113565	T	G	0.00429	PRKCZ	+	FALSE
chr1	10517526	T	C	0.00364		.	FALSE	AluSx1	SINE,Alu
chr6	71299074	A	G	0.00824		.	FALSE	AluSx1	SINE,Alu
chr1	109818161	C	T	6.45247E-05	CELSR2	+	FALSE
chr6	42856019	A	G	0.00184	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr12	92537702	T	A	0.00368	BTG1	-	FALSE
chr1	20978516	T	C	0.00774	PINK1-AS,DDOST	-	FALSE	AluY	SINE,Alu
chr9	132268440	A	G	3.40625E-05	LINC00963	+	TRUE	AluJb	SINE,Alu
chr1	52378211	T	C	0.00195	RAB3B	-	TRUE	FLAM_C	SINE,Alu
chr1	58946773	C	T	0.00037	OMA1	-	FALSE
chr1	44088112	G	T	0.00822	PTPRF	+	FALSE	(T)n	SINE,Alu
chr5	40828060	T	C	0.00253	LOC100506548	-	FALSE
chr6	74303543	T	C	0.00031	SLC17A5	-	TRUE	AluJr	SINE,Alu
chr3	15113893	T	C	0.00042	RBSN	-	TRUE	AluSz6	SINE,Alu
chr5	43574976	T	C	0.00613	NNT-AS1	-	TRUE	AluSq2	SINE,Alu
chr3	42591956	G	A	0.00030	SEC22C	-	FALSE
chr1	214529320	T	G	0.00365	PTPN14	-	FALSE	AluJb	SINE,Alu
chr11	69480680	T	C	0.00252	ORAOV1	-	FALSE	AluSx1	SINE,Alu
chr5	79279310	T	A	0.00167	MTX3	-	FALSE
chr1	159946779	G	A	0.00019	LINC01133	+	FALSE	(GAAA)n	SINE,Alu
chr2	86248309	T	C	0.00808	LOC90784	-	FALSE
chr3	15112398	T	C	2.78799E-05	RBSN	-	TRUE	AluSq2	SINE,Alu
chr1	16945409	T	A	0.00290	CROCCP2	-	FALSE
chr12	123640853	C	G	0.00667		.	FALSE
chr1	24989266	A	T	0.00392	SRRM1	+	FALSE
chr2	37331134	T	C	0.00042		.	FALSE	AluSx1	SINE,Alu
chr4	2516790	G	T	0.00141	RNF4	+	FALSE
chr19	42375627	A	G	0.00463		.	FALSE	AluSx	SINE,Alu
chr1	148010972	A	G	0.00068	NBPF8	-	FALSE
chr2	112252630	A	C	0.00040	MIR4435-2HG	-	FALSE
chr14	92585231	T	C	0.00023	NDUFB1	-	TRUE	AluSg	SINE,Alu
chr3	73115786	T	C	3.88619E-05	PPP4R2	+	FALSE
chr1	36770950	A	G	0.00118	THRAP3	+	FALSE
chr5	126171974	C	T	0.00867	LMNB1	+	FALSE
chr20	18468339	T	C	0.00062	RBBP9	-	TRUE	AluSz6	SINE,Alu
chr1	109746825	A	G	0.00094	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr1	16932495	A	C	0.00199	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	231154935	C	T	0.00093	FAM89A	-	FALSE
chr15	59954723	T	A	0.00043	BNIP2	-	FALSE
chr2	128060040	T	C	0.00494	MAP3K2	-	FALSE	(CA)n	SINE,Alu
chr1	85785550	C	A	0.00156	DDAH1	-	FALSE
chr14	77581481	C	A	0.00997	CIPC	+	FALSE
chr2	201774244	T	C	0.00332		.	FALSE	AluSz	SINE,Alu
chr1	70718276	G	T	0.00836		.	FALSE
chr10	102308803	G	C	0.00324	HIF1AN	+	FALSE	(GT)n	SINE,Alu
chr19	11256702	T	C	6.98885E-06	SPC24	-	TRUE	AluJr4	SINE,Alu
chr14	23441536	G	A	0.00793	AJUBA	-	FALSE	GA-rich	SINE,Alu
chr4	52753346	A	G	0.00782	DCUN1D4	+	TRUE	AluSc	SINE,Alu
chr1	160967856	T	C	0.00100	F11R	-	TRUE	AluSp	SINE,Alu
chr3	12598618	C	T	0.00812	MKRN2	+	FALSE
chr3	195243003	A	C	0.00301	PPP1R2	-	FALSE
chr1	145512937	A	G	1.47906E-06	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	28261658	T	G	0.00280	SMPDL3B	+	FALSE
chr9	128001436	C	T	0.00052	HSPA5	-	FALSE
chr2	47387307	G	T	0.00035	CALM2	-	FALSE
chr2	232319499	T	A	0.00165	NCL	-	FALSE
chr1	19810692	A	C	0.00069	CAPZB	-	FALSE
chr2	37429626	A	G	0.00028	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr1	33145978	A	T	0.00288	SYNC,RBBP4	+,-	FALSE
chr2	128064446	G	T	0.00652	MAP3K2	-	FALSE	(GT)n	SINE,Alu
chr1	20976023	T	C	1.28334E-05	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr1	10519888	T	C	0.00666		.	FALSE	AluJr	SINE,Alu
chr19	65139	A	G	0.00777	WASH5P	-	FALSE
chr6	149915565	A	G	0.00198	RPS18P9	+	FALSE
chr1	179042905	A	G	0.00034	FAM20B	+	TRUE
chr3	108367794	G	T	0.00434	DZIP3	+	FALSE
chr1	179042905	A	G	0.00972	FAM20B	+	TRUE
chr3	72426071	T	A	0.00169	RYBP	-	FALSE	(T)n	SINE,Alu
chr2	171849612	T	C	0.00364	TLK1	-	FALSE
chr1	46075604	A	G	0.00365	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	200375418	C	T	0.00671	ZNF281	-	FALSE
chr1	10519888	T	C	0.00878		.	FALSE	AluJr	SINE,Alu
chr19	58357268	A	G	0.00099	ZNF587B	+	TRUE	AluSx3	SINE,Alu
chr3	126755134	C	T	0.00920	PLXNA1	+	FALSE
chr1	86049391	T	A	0.00019	CYR61	+	FALSE
chr1	1668943	A	C	0.00640	SLC35E2	-	FALSE
chr1	322711	A	G	0.00149		.	FALSE
chr1	146250905	G	C	0.00444	NBPF20,NBPF10,NBPF25P	+	FALSE
chr1	100657416	C	T	0.00228	DBT	-	FALSE	AluJb	SINE,Alu
chr1	142804471	C	G	0.00555		.	FALSE	MIRb	SINE,Alu
chr1	90152146	C	T	1.61967E-05	LRRC8C	+	FALSE
chr1	109818158	C	T	0.00212	CELSR2	+	FALSE
chr16	75479467	T	C	0.00160	TMEM170A	-	TRUE	AluJb	SINE,Alu
chr5	78532658	C	T	0.00882	JMY	+	FALSE
chr1	569803	G	A	0.00695		.	FALSE
chr8	104343686	G	A	0.00031	FZD6	+	FALSE
chr2	37328008	T	C	0.00733		.	FALSE
chr1	36067760	T	C	0.00768	PSMB2	-	TRUE	AluSz	SINE,Alu
chr3	57882601	C	T	0.00987	SLMAP	+	FALSE
chr1	25894472	C	G	0.00063	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr1	203098275	T	G	0.00942	ADORA1	+	FALSE
chr12	133297974	A	G	6.19654E-10	PGAM5	+	TRUE	AluJo	SINE,Alu
chr1	204524546	A	G	0.00054	MDM4	+	TRUE	AluY	SINE,Alu
chr7	44842099	A	G	1.82502E-05	PPIA	+	TRUE
chr7	2473753	C	T	0.00806	CHST12	+	FALSE	(CCGC)n	SINE,Alu
chr4	153898316	A	G	0.00312	FHDC1	+	TRUE	AluJo	SINE,Alu
chr2	181737842	C	T	0.00350	SCHLAP1	+	FALSE
chr1	118472382	G	T	0.00029	WDR3	+	FALSE
chr1	180854783	T	C	0.00292	XPR1	+	FALSE
chr1	220231276	T	C	0.00937	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr3	120115286	T	G	0.00077	FSTL1	-	FALSE
chr1	110596904	A	G	0.00364	STRIP1	+	FALSE
chr1	31345785	T	A	0.00962	SDC3	-	FALSE
chr1	67874697	T	C	4.44446E-05	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr18	2763697	C	T	8.35636E-08	SMCHD1	+	FALSE
chr1	16529016	C	T	0.00024	ARHGEF19	-	FALSE
chr5	174956218	A	G	0.00953	SFXN1	+	TRUE	AluSp	SINE,Alu
chr1	16933110	T	C	0.00821	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	17085028	G	A	0.00803	MST1L,LOC102724562	-	FALSE
chr17	48771488	C	A	0.00148	ANKRD40	-	FALSE	AluSz	SINE,Alu
chr1	161338504	C	G	0.00343		.	FALSE
chr1	1337735	T	G	3.46713E-05	MRPL20	-	FALSE
chr1	183094547	T	C	0.00277	LAMC1	+	FALSE
chr1	20978324	T	G	0.00153	PINK1-AS,DDOST	-	FALSE	AluY	SINE,Alu
chr1	116239841	A	T	0.00069	VANGL1	+	FALSE
chr1	38423199	A	T	0.00192	SF3A3	-	FALSE	AluJo	SINE,Alu
chr2	76672504	A	G	2.97414E-06		.	FALSE	7SK	SINE,Alu
chr11	118947634	C	T	0.00276	VPS11	+	FALSE
chr3	15114759	G	A	0.00595	RBSN	-	FALSE
chr3	141012493	C	A	0.00249	PXYLP1	+	FALSE	MER58A	SINE,Alu
chr1	77759578	A	G	0.00404	AK5	+	FALSE
chr1	236702210	A	G	0.00153	LGALS8	+	FALSE
chr9	89626839	T	G	0.00016	LOC440173	-	FALSE
chr3	10193796	A	G	2.82806E-06	VHL	+	TRUE	AluSx	SINE,Alu
chr3	196082911	T	C	0.00250	UBXN7	-	FALSE
chr1	10521238	T	C	0.00793	DFFA	-	TRUE	AluY	SINE,Alu
chr3	149683508	A	G	0.00397	PFN2	-	FALSE
chr1	184762524	T	C	0.00778	FAM129A	-	TRUE	AluSz	SINE,Alu
chr3	195963398	A	G	0.00271		.	FALSE
chr1	38411445	G	A	0.00625	INPP5B	-	FALSE
chr1	193222534	G	T	0.00504	CDC73	+	FALSE	(TGT)n	SINE,Alu
chr1	35648712	G	A	0.00298	SFPQ	-	FALSE
chr21	9909176	C	A	0.00850	TEKT4P2	-	FALSE
chr1	55316322	A	G	0.00172	DHCR24	-	FALSE
chr1	16918717	C	T	0.00550	NBPF1	-	FALSE
chr1	76253041	T	A	0.00646	RABGGTB	+	FALSE
chr5	178986978	C	G	0.00341	RUFY1	+	FALSE
chr1	36068325	T	C	0.00638	PSMB2	-	TRUE	AluSc	SINE,Alu
chr9	124094999	G	T	0.00764	GSN	+	FALSE	(TG)n	SINE,Alu
chr1	62673225	G	A	0.00039	L1TD1	+	FALSE	L1MEd	SINE,Alu
chr20	25427805	A	G	1.54320E-07	GINS1	+	TRUE	AluSz	SINE,Alu
chr10	22825288	G	A	0.00051	PIP4K2A	-	FALSE
chr1	65330637	C	T	0.00047	JAK1	-	FALSE
chr8	145159706	C	G	0.00561	MAF1	+	FALSE
chr1	145511929	A	G	0.00028	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr3	183209036	T	C	1.78981E-05	KLHL6	-	TRUE	AluSq	SINE,Alu
chr3	39452945	T	A	0.00462	RPSA	+	FALSE	MER5B	SINE,Alu
chr1	45975358	A	G	0.00020	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr2	31557839	G	T	0.00145	XDH	-	FALSE	AluJr	SINE,Alu
chr1	19543282	T	C	0.00228	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr7	137561083	T	C	0.00194	CREB3L2	-	FALSE	(GT)n	SINE,Alu
chr1	160967857	T	C	0.00806	F11R	-	TRUE	AluSp	SINE,Alu
chr1	53359745	A	G	0.00129	ZYG11A	+	TRUE	AluSx4	SINE,Alu
chr1	44463185	T	G	0.00469	SLC6A9	-	FALSE
chr1	788840	T	C	0.00415	LINC01128	+	FALSE
chr1	10517689	T	C	0.00504		.	FALSE	AluSx1	SINE,Alu
chr2	26613949	A	G	0.00669	EPT1	+	FALSE
chr1	150783968	T	A	0.00368	ARNT	-	FALSE
chr10	119766673	T	G	0.00082	RAB11FIP2	-	FALSE
chr10	65380587	A	G	0.00344	REEP3	+	FALSE
chr2	61764920	C	A	0.00662	XPO1	-	FALSE
chr1	11298093	C	T	7.93954E-12	MTOR	-	FALSE
chr1	16893813	A	G	7.34801E-05	NBPF1	-	FALSE
chr1	1344998	A	G	0.00062		.	FALSE	AluSg	SINE,Alu
chr4	177252327	A	G	2.51883E-09	SPCS3	+	TRUE
chr1	145282799	G	A	0.00915	NBPF20,NOTCH2NL	+	FALSE
chr2	69688754	T	C	0.00319	AAK1	-	TRUE	AluSq2	SINE,Alu
chr1	16889566	T	C	0.00436	NBPF1	-	TRUE
chr1	204525667	A	G	3.94227E-05	MDM4	+	TRUE	AluSz	SINE,Alu
chr1	148003749	T	C	0.00517	NBPF8	-	TRUE	L1MC4	SINE,Alu
chr5	102345546	A	C	0.00463	PAM	+	FALSE
chr1	120612168	C	T	0.00607	NOTCH2	-	FALSE
chr1	899810	G	A	3.12519E-10	KLHL17	+	FALSE
chr3	40503557	T	C	0.00746	RPL14	+	FALSE
chr2	37431521	A	G	0.00783	CEBPZOS,CEBPZ	+,-	FALSE	AluSc	SINE,Alu
chr12	125627187	C	T	0.00055	AACS	+	FALSE
chr17	416890	C	T	0.00231	VPS53	-	FALSE
chr1	10517958	G	A	0.00149		.	FALSE
chr1	11084103	T	A	0.00118	TARDBP	+	FALSE
chr1	145293469	G	C	0.00888	NBPF20,NBPF10	+	FALSE
chr2	206982255	T	C	0.00431		.	FALSE	AluSg7	SINE,Alu
chr1	40213234	A	G	0.00146	PPIE	+	TRUE	AluSx3	SINE,Alu
chr19	63633	C	T	0.00999	WASH5P	-	FALSE	MLT1K	SINE,Alu
chr1	27202901	T	C	0.00224		.	FALSE	AluSq2	SINE,Alu
chr2	223807817	A	C	0.00991	ACSL3	+	FALSE	(A)n	SINE,Alu
chr1	115248084	C	T	0.00171	NRAS	-	FALSE
chr12	125267857	T	C	0.00702	SCARB1	-	TRUE	FRAM	SINE,Alu
chrX	2825119	T	C	0.00670	ARSD	-	TRUE	AluSx1	SINE,Alu
chr3	122283287	T	C	8.96368E-06	DTX3L,PARP9	+,-	FALSE
chr6	7250960	G	A	0.00889	RREB1	+	FALSE
chr1	22419433	T	G	0.00156	CDC42	+	FALSE
chr4	2940485	T	C	2.93326E-08	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr9	34088016	G	A	0.00226	DCAF12	-	FALSE
chr1	207942482	A	G	0.00715	CD46	+	TRUE	AluSg4	SINE,Alu
chr5	64016339	C	T	6.96791E-06	SREK1IP1	-	FALSE
chr1	179829200	T	C	0.00497	TOR1AIP2	-	TRUE	AluJr	SINE,Alu
chr1	95123291	G	C	0.00040	LINC01057	-	FALSE	LTR7Y	SINE,Alu
chr1	40705200	G	A	3.20116E-08	RLF	+	FALSE
chr1	10093457	C	T	0.00777	UBE4B	+	FALSE
chr14	23795222	T	G	0.00162	BCL2L2-PABPN1,PABPN1	+	FALSE
chr1	145375858	T	C	0.00069	NBPF20,NBPF10	+	FALSE
chr1	1255400	T	C	0.00224	CPSF3L	-	FALSE
chr2	3193040	G	A	0.00650	TSSC1	-	FALSE
chr3	12624321	A	G	2.86985E-06	MKRN2	+	FALSE
chr5	96498783	G	A	0.00056	RIOK2	-	FALSE
chr6	52860746	T	G	0.00011		.	FALSE	7SK	SINE,Alu
chr1	101444796	C	T	0.00453	SLC30A7	+	FALSE
chr3	45636335	A	G	0.00262	LIMD1	+	FALSE	(AC)n	SINE,Alu
chr1	165728775	C	T	5.75449E-06	TMCO1	-	FALSE
chr1	22352040	G	T	0.00255	LOC101928043,LINC00339	+,-	FALSE
chr1	10520684	T	C	0.00125	DFFA	-	TRUE	AluSc8	SINE,Alu
chr2	69688901	T	C	0.00503	AAK1	-	TRUE	AluSq2	SINE,Alu
chr6	133135886	A	G	0.00629	RPS12	+	FALSE
chr1	33066960	A	G	0.00079	ZBTB8A	+	TRUE	AluSq4	SINE,Alu
chr4	7764017	T	C	0.00028	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	11979809	A	C	0.00744	KIAA2013	-	FALSE
chr6	43582895	A	G	0.00983	POLH	+	TRUE	AluSx1	SINE,Alu
chr8	61693942	G	A	0.00350	CHD7	+	FALSE
chr4	57801194	A	T	0.00834	REST	+	FALSE
chr17	41144609	G	A	0.00821	RUNDC1	+	FALSE
chr1	200941185	T	G	0.00729	KIF21B	-	FALSE
chr4	10443062	T	G	0.00303	ZNF518B	-	FALSE
chr14	50792837	A	G	0.00550	ATP5S	+	TRUE	AluSx	SINE,Alu
chr2	85548076	A	T	0.00682	TGOLN2	-	FALSE
chr9	131457814	G	A	0.00021	SET	+	FALSE
chr9	96438975	T	C	0.00042	PHF2	+	FALSE	(CTCCAC)n	SINE,Alu
chr1	1636355	A	G	0.00857	CDK11B,CDK11A	-	FALSE
chr15	42860107	A	G	0.00194	HAUS2	+	TRUE	AluSg	SINE,Alu
chr5	175811093	A	G	0.00730	NOP16	-	FALSE
chr1	1668168	G	T	1.67311E-07	SLC35E2	-	FALSE	AluSz	SINE,Alu
chr2	37334139	T	C	0.00146	EIF2AK2	-	TRUE	AluSz	SINE,Alu
chr4	120216206	C	T	0.00205	USP53	+	FALSE
chr1	144931330	C	T	0.00194	NBPF20,PDE4DIP	+,-	FALSE
chr10	101563815	G	A	0.00218	ABCC2	+	FALSE
chr2	46852033	A	G	0.00543	CRIPT	+	FALSE
chr1	16889563	C	A	0.00037	NBPF1	-	FALSE
chr1	46662492	G	A	9.93078E-05	POMGNT1	-	FALSE
chr1	116234083	T	A	0.00477	VANGL1	+	FALSE
chr1	113511408	A	G	0.00738		.	FALSE	AluY	SINE,Alu
chr1	19545145	A	T	0.00510	LOC101927895,EMC1	+,-	FALSE
chr14	23300642	C	A	0.00266	MRPL52	+	FALSE	MIRb	SINE,Alu
chr5	40828076	C	A	0.00900	LOC100506548	-	FALSE
chr2	114352179	G	A	1.68965E-05	WASH2P	+	FALSE
chr1	157963370	C	G	0.00445	KIRREL	+	FALSE
chr1	19543349	T	C	2.12419E-08	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr2	65432447	C	T	0.00486		.	FALSE
chr1	10517672	T	C	0.00070		.	FALSE	AluSx1	SINE,Alu
chr1	143399198	C	T	0.00146		.	FALSE
chr1	36068052	G	T	1.43241E-12	PSMB2	-	FALSE	L1ME4b	SINE,Alu
chr8	143763622	C	T	0.00470	PSCA	+	FALSE
chr3	10193797	A	G	0.00199	VHL	+	TRUE	AluSx	SINE,Alu
chr1	160967755	C	T	0.00563	F11R	-	FALSE	(T)n	SINE,Alu
chr1	78414329	G	A	0.00785	FUBP1	-	FALSE	A-rich	SINE,Alu
chr1	9161231	T	C	0.00481		.	FALSE	AluSx	SINE,Alu
chr15	65442592	T	C	8.95444E-05	CLPX	-	TRUE	AluSg4	SINE,Alu
chr3	155660833	A	G	0.00020		.	FALSE	AluSz	SINE,Alu
chr1	85113229	A	G	0.00080	SSX2IP	-	FALSE
chr14	50053350	T	A	0.00071		.	FALSE	7SLRNA	SINE,Alu
chr7	55433884	A	C	0.00723	LANCL2	+	FALSE
chr12	98942690	A	G	3.03569E-06	TMPO	+	TRUE	AluSc	SINE,Alu
chr2	47387305	G	T	0.00322	CALM2	-	FALSE
chr1	24995941	A	G	0.00382	SRRM1	+	FALSE
chr1	161929879	A	T	0.00680	ATF6	+	FALSE
chr1	53288894	A	G	8.27269E-06	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr1	10518845	T	C	0.00882		.	FALSE	AluSx1	SINE,Alu
chr3	126156660	C	G	0.00182	ZXDC	-	FALSE
chr1	145293012	G	A	0.00250	NBPF20	+	FALSE
chr1	154128827	A	T	0.00724	TPM3	-	FALSE
chr9	133579674	A	G	0.00018	EXOSC2	+	TRUE	AluSx3	SINE,Alu
chr1	144833405	C	A	0.00345	NBPF20	+	FALSE	L1MEc	SINE,Alu
chr1	19543457	T	C	0.00143	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	26449882	A	G	0.00783	PDIK1L	+	FALSE
chr9	86553587	G	A	0.00556	C9orf64	-	FALSE
chr2	183643241	C	A	0.00108	DNAJC10	+	FALSE
chr19	19792345	A	G	0.00272	ZNF101	+	TRUE	AluJb	SINE,Alu
chr1	78603279	A	G	0.00089	GIPC2	+	FALSE
chr11	94801640	A	C	0.00790	SRSF8	+	FALSE
chr3	10192608	A	G	0.00030	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	180943529	C	T	0.00297	STX6	-	FALSE
chr16	10623571	T	C	0.00329	EMP2	-	TRUE	AluSp	SINE,Alu
chr1	1595539	T	C	0.00053	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr1	62579758	G	A	0.00250	PATJ	+	FALSE
chr1	57002773	A	G	0.00162	PLPP3	-	FALSE
chr2	70131584	G	A	0.00366	SNRNP27	+	FALSE
chr1	10517525	T	C	0.00775		.	FALSE	AluSx1	SINE,Alu
chr1	45976723	T	C	0.00239	MMACHC,PRDX1	+,-	FALSE
chr1	145511796	T	G	0.00173	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	(T)n	SINE,Alu
chr14	75202373	A	G	0.00019	FCF1	+	FALSE	AluSc	SINE,Alu
chr1	204524914	A	G	0.00766	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	231154921	C	T	0.00773	FAM89A	-	FALSE	(T)n	SINE,Alu
chr14	75202402	A	G	0.00141	FCF1	+	TRUE	AluSc	SINE,Alu
chr12	53435276	T	G	4.45732E-05	EIF4B	+	FALSE
chr16	10625266	T	C	0.00587	EMP2	-	TRUE	AluSx	SINE,Alu
chr1	52882970	A	G	0.00533	PRPF38A	+	FALSE
chr1	22148474	T	C	0.00089	LDLRAD2	+	FALSE	MIRb	SINE,Alu
chr4	77057501	A	G	0.00547	NUP54	-	FALSE
chr1	87213177	C	A	0.00020	SH3GLB1	+	FALSE
chr1	19953120	G	A	0.00212	MINOS1,MINOS1-NBL1	+	FALSE
chr1	16893686	G	C	0.00138	NBPF1	-	FALSE
chr4	13583889	T	C	2.08207E-10	BOD1L1	-	FALSE
chr1	19586458	A	G	1.61978E-09	MRTO4	+	TRUE	AluSz	SINE,Alu
chr3	15483744	A	G	0.00083	EAF1	+	FALSE
chr1	16932931	C	A	0.00191	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr14	95555551	C	T	0.00404	DICER1	-	FALSE
chr7	6501828	C	A	0.00114	KDELR2	-	FALSE
chr1	43391824	A	T	0.00552	SLC2A1	-	FALSE
chr2	204162597	A	G	0.00296	CYP20A1	+	TRUE	AluSx	SINE,Alu
chr1	115313039	A	G	0.00895	SIKE1	-	FALSE
chr1	988503	A	T	8.91206E-06	AGRN	+	FALSE
chr2	217366534	A	G	0.00733		.	FALSE	AluSz	SINE,Alu
chr1	40537942	A	C	0.00955	CAP1	+	FALSE	(A)n	SINE,Alu
chr5	40982394	C	T	0.00037	C7	+	FALSE	AluSx1	SINE,Alu
chr5	17276848	C	A	0.00634	BASP1	+	FALSE	(A)n	SINE,Alu
chr2	201842323	T	C	0.00591	FAM126B	-	TRUE	AluJb	SINE,Alu
chr17	41144251	T	G	0.00014	RUNDC1	+	FALSE
chr1	46806550	C	T	0.00105	NSUN4	+	FALSE
chr8	144332082	T	C	7.73207E-05	ZFP41	+	FALSE
chr1	145369709	A	G	0.00607	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr1	31342374	A	C	0.00446	SDC3	-	FALSE	(A)n	SINE,Alu
chr3	194369580	C	A	0.00042	LSG1	-	FALSE
chr2	178406768	T	A	0.00416	AGPS	+	FALSE
chr1	36067760	T	C	0.00024	PSMB2	-	TRUE	AluSz	SINE,Alu
chr4	77997064	A	G	0.00283	CCNI	-	FALSE	(A)n	SINE,Alu
chr2	85775237	T	C	6.42894E-05	GGCX	-	TRUE	AluSx4	SINE,Alu
chr1	26143725	A	T	0.00818	SEPN1	+	FALSE	AluSx	SINE,Alu
chr2	37327702	T	C	2.28397E-07		.	FALSE
chr1	117618067	C	T	0.00118	TTF2	+	FALSE
chr1	100654773	T	C	0.00810	DBT	-	TRUE	AluSz	SINE,Alu
chr3	44791062	T	C	0.00014	KIAA1143	-	FALSE
chr1	1419700	A	G	0.00464	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr1	229762054	T	A	0.00535	URB2	+	FALSE
chr1	36067752	T	C	5.48772E-07	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	180897569	C	T	0.00960	KIAA1614	+	FALSE
chr1	10438006	A	T	6.81521E-05	KIF1B	+	FALSE	AluSg	SINE,Alu
chr12	125511312	A	G	0.00638	THRIL	-	FALSE	AluSx1	SINE,Alu
chr1	36299630	A	G	0.00828	AGO4	+	FALSE
chr19	59093997	A	G	0.00047	CENPBD1P1	+	TRUE	AluY	SINE,Alu
chr1	31902343	T	C	1.48709E-05	SERINC2	+	FALSE
chr8	101932094	T	A	0.00288	YWHAZ	-	FALSE	MER34B-int	SINE,Alu
chr1	144932086	G	C	0.00997	NBPF20,PDE4DIP	+,-	FALSE
chr2	24223353	A	G	0.00083	UBXN2A	+	TRUE	AluSc	SINE,Alu
chr5	118174757	T	C	0.00032	DTWD2	-	TRUE	AluY	SINE,Alu
chr12	57923211	A	C	0.00071	MBD6	+	FALSE	(C)n	SINE,Alu
chr2	97534237	C	T	0.00644	SEMA4C	-	FALSE
chr1	179042701	A	G	0.00132	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr3	44791398	T	C	0.00081	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr6	150046734	T	C	0.00248	NUP43	-	FALSE
chr5	82877162	G	A	0.00296	VCAN	+	FALSE	(A)n	SINE,Alu
chr1	10519912	T	C	5.10285E-06		.	FALSE	AluJr	SINE,Alu
chr4	17802824	T	C	0.00594	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	172411496	A	G	0.00361	C1orf105,PIGC	+,-	FALSE
chr1	180169330	C	T	0.00015	FLJ23867	+	FALSE	MIR	SINE,Alu
chr1	201845881	A	C	0.00032	IPO9	+	FALSE
chr2	183642652	G	A	0.00309	DNAJC10	+	FALSE
chr3	156258319	T	C	0.00909	SSR3	-	TRUE	AluYk3	SINE,Alu
chr1	205057482	A	T	0.00907	RBBP5	-	FALSE
chr7	75045694	C	T	1.64957E-05	NSUN5P1	+	FALSE
chr1	19543456	T	C	0.00760	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	28826128	A	G	0.00060	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	114940216	T	G	0.00674	TRIM33	-	FALSE	(T)n	SINE,Alu
chr1	10517485	T	C	0.00260		.	FALSE	AluSx1	SINE,Alu
chr11	69468187	G	T	0.00827	CCND1	+	FALSE	(T)n	SINE,Alu
chr1	10520684	T	C	0.00389	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	211920314	T	C	0.00938	LPGAT1	-	FALSE
chr1	184762524	T	C	0.00260	FAM129A	-	TRUE	AluSz	SINE,Alu
chr2	29023117	A	T	0.00805	PPP1CB	+	FALSE
chr1	16890176	A	C	0.00753	NBPF1	-	FALSE
chr1	90401416	T	C	6.95799E-05	LRRC8D	+	FALSE
chr1	145512073	A	G	0.00285	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	6932082	T	A	0.00330	CAMTA1	+	FALSE
chr1	113001409	C	T	2.24539E-06	CTTNBP2NL	+	FALSE	AluJr	SINE,Alu
chr4	128756628	A	G	0.00011		.	FALSE	AluSx	SINE,Alu
chr1	28826150	A	G	0.00047	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr2	37328075	T	C	0.00335		.	FALSE
chr1	9328092	A	G	0.00058	H6PD	+	TRUE	AluJr	SINE,Alu
chr1	16889014	C	A	0.00473	NBPF1	-	FALSE
chr1	53288862	A	G	0.00155	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr11	32625925	A	G	0.00845	CCDC73	-	FALSE	AluJb	SINE,Alu
chr1	16061035	G	C	0.00089	PLEKHM2	+	FALSE
chr5	177019196	G	C	0.00509	TMED9	+	FALSE	(GCG)n	SINE,Alu
chr1	145509570	A	G	0.00028	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr6	38140503	C	T	0.00065	BTBD9	-	FALSE
chr1	220239448	T	C	0.00157	RNU5F-1,BPNT1	+,-	FALSE
chr1	110136458	A	G	0.00136	GNAI3	+	FALSE
chr10	15120275	T	C	0.00017	ACBD7	-	TRUE	L1PA7	SINE,Alu
chr1	19953131	G	A	0.00486	MINOS1,MINOS1-NBL1	+	FALSE
chr2	128603119	T	C	0.00340		.	FALSE	AluSp	SINE,Alu
chr1	225977968	C	T	0.00490	SRP9	+	FALSE
chr5	79923360	T	C	0.00727	DHFR	-	TRUE	AluJr	SINE,Alu
chr13	25473685	C	T	0.00580	CENPJ	-	FALSE
chr2	210885022	C	T	0.00325	RPE	+	FALSE
chr1	145513098	A	G	0.00171	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr6	143832707	G	A	0.00418	FUCA2	-	FALSE	(GCA)n	SINE,Alu
chr9	136209399	A	T	0.00011	MED22	-	FALSE
chr3	156259340	T	C	0.00070	SSR3	-	TRUE	AluSq2	SINE,Alu
chr1	67451522	A	T	0.00883	MIER1	+	FALSE
chr6	31378387	T	C	0.00207		.	FALSE
chr3	124688639	C	A	0.00165	HEG1	-	FALSE

RBP	PCBP1
Knock-Method	shRNA
RBP Family	KH_1
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR635FRH
Platform	HiSeq
Pubmed ID	32252787

PCBP1 - Target Gene Network