Dataset Overview
RBP
DDX1
Knock-Method
shRNA
RBP Family
DEAD
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR070LJO
Platform
HiSeq
Pubmed ID
32252787
DDX1 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of DDX1
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1BG
15.89
6.87
-1.02051
1.38645E-08
2.42215E-07
A1CF
30.66
32.42
0.32952
0.00012
0.00081
AAAS
25.65
33.27
0.23401
0.01702
0.04976
AACS
15.28
13.26
-0.23196
0.01925
0.05493
AAED1
6.5
4.95
-0.36065
0.00730
0.02525
AAGAB
8.9
11.38
0.32461
0.00666
0.02338
AAK1
2.42
4.27
0.76412
1.66923E-06
1.80765E-05
AAMDC
23.01
18.07
-0.43293
0.01711
0.04999
AARS2
4.86
6.35
0.30388
0.00939
0.03089
AATF
16.24
21.35
0.30495
0.00244
0.01010
Showing 1 to 10 of 5,654 entries
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Function Analysis of Target Genes of DDX1
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A2M
9264904_9265123_9264754_9264807_9265955_9266139
0.00921
-0.21
DataSet_01_126
View details
ABHD12
25319520_25319640_25303960_25304066_25319862_25319987
0.00977
0.032
DataSet_01_126
View details
ABI1
27044583_27044670_27040526_27040712_27047990_27048167
0.00001
-0.221
DataSet_01_126
View details
ABI1
27060003_27060018_27059173_27059274_27065993_27066170
0.00581
-0.042
DataSet_01_126
View details
ACIN1
23536522_23537880_23535174_23535217_23538684_23538734
0.00937
-0.109
DataSet_01_126
View details
ACLY
40067478_40067659_40066474_40066537_40068672_40068795
0.00750
0.011
DataSet_01_126
View details
ACOT9
23752457_23752484_23751288_23751334_23754035_23754133
0.00986
0.236
DataSet_01_126
View details
ACOX2
58522329_58522457_58520673_58520924_58522845_58522899
0.00530
0.09
DataSet_01_126
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AFP
74320884_74321007_74319481_74319614_74321347_74321494
0.00769
0.02
DataSet_01_126
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AHSG
186334972_186335164_186334231_186334316_186338374_186339107
0.00616
0.413
DataSet_01_126
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Showing 1 to 10 of 270 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABI1
27044583_27044670_27047990_27048164_27040526_27040712
0.00143
0.155
DataSet_01_126
View details
ABI1
27044583_27044670_27047990_27048167_27040526_27040712
0.00450
0.121
DataSet_01_126
View details
ABLIM1
116207638_116207785_116211382_116211430_116205070_116205162
0.00071
-0.184
DataSet_01_126
View details
ACADSB
124797262_124797363_124799981_124800188_124793871_124794031
0.00272
0.114
DataSet_01_126
View details
ACAT1
108002633_108002681_108004546_108004664_107992293_107992405
0.00077
-0.166
DataSet_01_126
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ACP1
272036_272150_272191_272305_271865_271939
0.00016
0.093
DataSet_01_126
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ADCK2
140380841_140380937_140386789_140387041_140378954_140379083
0.00338
0.24
DataSet_01_126
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AFMID
76200908_76200981_76201683_76201819_76198783_76198832
0.00627
0.151
DataSet_01_126
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AGER
32149127_32149254_32149300_32149409_32148898_32149016
0.00427
-0.314
DataSet_01_126
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AGT
230841678_230841946_230845740_230846599_230839938_230840083
0.00007
-0.194
DataSet_01_126
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Showing 1 to 10 of 131 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ANKZF1
220100182_220100343_220100182_220100307_220100429_220100597
0.00013
0.145
DataSet_01_126
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ASGR2
7012075_7012207_7012090_7012207_7011780_7011876
0.00816
0.08
DataSet_01_126
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BTAF1
93718821_93719039_93718821_93718911_93719541_93719637
0.00747
-0.161
DataSet_01_126
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C17orf76-AS1
16342640_16343017_16342640_16342728_16343498_16343567
0.00226
0.115
DataSet_01_126
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CCDC84
118881930_118882021_118881930_118881993_118882648_118882713
0.00301
-0.329
DataSet_01_126
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DHX38
72139903_72140016_72139903_72140003_72141238_72141447
0.00756
0.117
DataSet_01_126
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DRG2
18002946_18003046_18002946_18003029_18003676_18003749
0.00460
-0.732
DataSet_01_126
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FGFR4
176514419_176514636_176514419_176514543_176516550_176516694
0.00017
-0.29
DataSet_01_126
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GPX4
1105656_1106265_1105656_1105808_1106398_1106458
0.00154
-0.022
DataSet_01_126
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LIN54
83905313_83906029_83905976_83906029_83900035_83900159
0.00758
-0.213
DataSet_01_126
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Showing 1 to 10 of 20 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AC040977.1
6915927_6916096_6915927_6916076_6916984_6917062
0.00671
0.053
DataSet_01_126
View details
AC040977.1
6915927_6916080_6915927_6916076_6916984_6917062
0.00391
0.048
DataSet_01_126
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ACAA1
38167652_38167843_38167652_38167832_38168000_38168191
0.00014
-0.049
DataSet_01_126
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ANKS6
101518701_101518888_101518701_101518885_101530362_101530532
0.00146
0.544
DataSet_01_126
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APOH
64216731_64216797_64216731_64216764_64219815_64219892
0.00167
-0.5
DataSet_01_126
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ATG9A
220075102_220075274_220075102_220075197_220075432_220075545
0.00139
0.088
DataSet_01_126
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ATXN2L
28843507_28843720_28843525_28843720_28842282_28842393
0.00280
-0.043
DataSet_01_126
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B4GALT3
161141755_161141879_161141755_161141854_161142016_161142200
0.00524
-0.092
DataSet_01_126
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BMP1
22058630_22059441_22059315_22059441_22054752_22054933
0.00462
-0.356
DataSet_01_126
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BSDC1
32849430_32849649_32849430_32849598_32852379_32852496
0.00568
0.118
DataSet_01_126
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Showing 1 to 10 of 56 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AAMP
219130301_219130669_219130301_219130405_219130553_219130669
0.00015
-0.05
DataSet_01_126
View details
ACADVL
7127131_7127388_7127131_7127194_7127286_7127388
0.00478
0.021
DataSet_01_126
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AP1G2
24031170_24031624_24031170_24031394_24031496_24031624
0.00512
-0.123
DataSet_01_126
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APOA2
161193170_161193418_161193170_161193215_161193384_161193418
0.00000
0.189
DataSet_01_126
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ARHGEF16
3394438_3395176_3394438_3394590_3394987_3395176
0.00913
-0.14
DataSet_01_126
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ARPC3
110873914_110874488_110873914_110874009_110874361_110874488
0.00434
-0.01
DataSet_01_126
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AUP1
74754067_74754490_74754067_74754248_74754374_74754490
0.00051
-0.165
DataSet_01_126
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BAX
49458804_49459090_49458804_49458856_49458943_49459090
0.00549
0.056
DataSet_01_126
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BRD2
32944338_32945347_32944338_32944713_32945218_32945347
0.00047
0.064
DataSet_01_126
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C17orf76-AS1
16342640_16343017_16342640_16342728_16342841_16343017
0.00218
-0.012
DataSet_01_126
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
120539711
G
T
0.00627
NOTCH2
-
FALSE
chr1
93307477
A
G
6.92611E-06
FAM69A,RPL5
+,-
FALSE
chr1
10517306
T
C
0.00102
.
FALSE
AluJr
SINE,Alu
chr1
25894472
C
G
0.00594
LDLRAP1
+
FALSE
MIRb
SINE,Alu
chr1
26755229
A
G
0.00318
LIN28A
+
FALSE
AluSx1
SINE,Alu
chr1
10520117
T
C
0.00078
.
FALSE
AluSx
SINE,Alu
chr1
11722688
G
A
0.00076
FBXO44
+
FALSE
chr1
1337734
C
T
3.46713E-05
MRPL20
-
FALSE
chr1
53289940
A
G
0.00694
ZYG11B
+
TRUE
FRAM
SINE,Alu
chr1
182569318
G
T
0.00101
RGS16
-
FALSE
Showing 1 to 10 of 474 entries
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression