Dataset Overview
RBPRPS10
Knock-MethodshRNA
RBP FamilyS10_plectin
Biosample NameK562
Tissue TypeHaematopoietic_and_lymphoid_tissue
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR004RGI
PlatformHiSeq
Pubmed ID32252787

RPS10 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of RPS10
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of RPS10


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr191037986AT0.00379CNN2+FALSE
chr1162354204CA0.00193C1orf226+FALSE
chr110368092AC0.00945KIF1B+FALSE
chr1109351501AG0.00921STXBP3+FALSE
chr1148561090GA0.00087NBPF15+FALSE
chr187379497AG0.00067SEP15-FALSE
chr237327702TC0.00119.FALSE
chr28823954GA7.64310E-06ID2+FALSE
chr378646942TG0.00093ROBO1-FALSE
chr349396588TC0.00239RHOA-FALSE
chr764435684TG0.00239ZNF117-FALSE
chr193617403TG0.00053TMED5-FALSE
chr1163394020AT0.00175ATL3-FALSE
chr1194801632CA0.00194SRSF8+FALSE
chr136067925TC0.00397PSMB2-TRUEAluSzSINE,Alu
chr237328008TC1.98312E-07.FALSE
chr110520154TC0.00021.FALSEAluSxSINE,Alu
chr3191115082GC0.00037CCDC50+FALSE
chr2242384368GA0.00096FARP2+FALSEAluJrSINE,Alu
chr356763316GA0.00830ARHGEF3-FALSE
chr3160969268CT0.00835NMD3+FALSE
chrX123046302AG0.00649XIAP+TRUEAluJbSINE,Alu
chr16159719CT4.79205E-09KCNAB2+FALSE
chr1541597484AG0.00619.FALSEAluSz6SINE,Alu
chr199673113TC0.00330.FALSEAluSx3SINE,Alu
chr1542860107AG0.00194HAUS2+TRUEAluSgSINE,Alu
chr2236677549CT0.00040MYH9-FALSE
chr1424760808CT0.00203DHRS1-FALSE
chr613788387TC0.00240MCUR1-TRUEAluSxSINE,Alu
chr236776054CT0.00028CRIM1+FALSE
chr237327666TC0.00231.FALSE
chr1542503333TC0.00120TMEM87A-FALSE(T)nSINE,Alu
chr4177251290GA0.00580SPCS3+FALSE
chr1254634283TC0.00047CBX5-TRUEAluJrSINE,Alu
chr729961884CG0.00024SCRN1-FALSE
chr5122359498AC0.00038PPIC-FALSE(AC)nSINE,Alu
chr6109785887TC7.14632E-06MICAL1,ZBTB24-TRUEAluJrSINE,Alu
chr110521170TC0.00538DFFA-TRUEAluYSINE,Alu
chr153288974AT0.00265ZYG11B+FALSEAluJoSINE,Alu
chr398299365TG3.92075E-11CPOX-FALSE
chr337407769AT0.00406GOLGA4+FALSE
chr1148189152AC0.00050PTPRJ+FALSE
chr333430397CT0.00171UBP1-FALSE
chr1144816555CT0.00530NBPF20,NBPF9+FALSE
chr110521238TC0.00797DFFA-TRUEAluYSINE,Alu
chr1145511968AG0.00411NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr1900719TA0.00436KLHL17+FALSE(TTTA)nSINE,Alu
chr232535746AG0.00085.FALSEAluJbSINE,Alu
chr830535975TC5.05710E-05GSR-TRUEAluJrSINE,Alu
chr2062598815CT0.00711ZNF512B-FALSE
chr8133859871TA0.00027PHF20L1+FALSE
chr136068052GT1.43241E-12PSMB2-FALSEL1ME4bSINE,Alu
chr2120022387CT0.00728STEAP3+FALSE
chr152817434TC0.00799CC2D1B-TRUEAluSg4SINE,Alu
chr154571380AG0.00332TCEANC2+TRUEAluScSINE,Alu
chr237329307TC0.00201.FALSEAluJr4SINE,Alu
chr564964623TC1.14652E-05SGTB-TRUEAluSx1SINE,Alu
chr1145689568AG0.00131NBPF20,NBPF10+TRUEAluSgSINE,Alu
chr417803568TC0.00044DCAF16-TRUEAluYSINE,Alu
chr121810693AG0.00370NBPF3+FALSEL1MC4SINE,Alu
chr1674655596TG0.00028RFWD3-FALSEAluSxSINE,Alu
chr2025428587AG0.00137GINS1+TRUEAluJbSINE,Alu
chr1071993094TG0.00078PPA1-FALSE
chr19162206TC0.00882.FALSEAluSxSINE,Alu
chr1145283718GA0.00897NBPF20,NOTCH2NL+FALSE
chr1252710721GC0.00519KRT83-FALSE
chr1145368837CA4.93702E-07NBPF20,NBPF10+FALSE
chr1207942336AG0.00586CD46+TRUEAluSg4SINE,Alu
chr1942376711AG0.00223.FALSEAluSpSINE,Alu
chr1160112392GA0.00701ATP1A2+FALSEAluSx3SINE,Alu
chr1648386442AG0.00824LONP2,MIR5095+TRUEAluSz6SINE,Alu
chr128261654TG0.00574SMPDL3B+FALSE
chr110520603TG0.00838DFFA-FALSEAluSc8SINE,Alu
chr351738256AG0.00312TEX264+FALSE
chr110520378TC0.00115.FALSEAluSx1SINE,Alu
chr3183209035TC9.98912E-07KLHL6-TRUEAluSqSINE,Alu
chr417488244GA0.00030QDPR-FALSE
chr19160975TC0.00347.FALSEAluJbSINE,Alu
chr254888359AG3.08576E-05SPTBN1+FALSE
chr4160279820CT0.00354RAPGEF2+FALSE
chr136067760TC0.00203PSMB2-TRUEAluSzSINE,Alu
chr1145281408CT0.00220NBPF20,NOTCH2NL+FALSE
chr16695423TG9.25675E-05THAP3,DNAJC11+,-FALSE
chr1110136321TA0.00721GNAI3+FALSE
chr11252662TC0.00136CPSF3L-TRUEAluSpSINE,Alu
chr1016554733GT0.00706PTER+FALSE
chr830643547TA0.00748PPP2CB-FALSE
chr116958064AG0.00240.FALSE
chr231491075AG0.00061EHD3+FALSE
chr63266908GA0.00974PSMG4+FALSE
chr644222158TA0.00856SLC35B2-FALSE
chr119595137CT0.00085AKR7L-FALSE
chr5125961816AG0.00013PHAX+TRUEFLAM_CSINE,Alu
chr1154128836AT0.00090TPM3-FALSE
chr347386062TA4.63678E-05KLHL18+FALSE
chr1201845899GT1.72907E-05IPO9+FALSE
chr3185646406AT0.00023TRA2B-FALSE
chrX118672641TC0.00027CXorf56-TRUEAluSxSINE,Alu
chr126603883GA0.00660CEP85+FALSE
chr1173836602GA0.00886GAS5-FALSEAluSxSINE,Alu
chr1160966376TC0.00996F11R-TRUEAluSgSINE,Alu
chr144088117GT0.00731PTPRF+FALSE(T)nSINE,Alu
chr732529936GC0.00027LSM5-FALSE
chr5125961623AG6.78430E-09PHAX+TRUEAluSz6SINE,Alu
chr1210311410AG0.00909OLR1-FALSE
chr11125763746CG0.00166HYLS1,PUS3+,-FALSE
chr1148595665AG0.00141NBPF15+TRUEL1MC4SINE,Alu
chr16659505GA0.00017KLHL21-FALSE
chr1150241230GT7.51943E-05APH1A-FALSE
chr3183890868AG5.00274E-08DVL3+FALSEL2SINE,Alu
chr10115526177AG0.00237PLEKHS1+FALSE
chr5157185192AG0.00835LSM11+TRUEAluSqSINE,Alu
chr388101339TC0.00531CGGBP1-FALSE
chr127045885AC0.00473ATN1+FALSE(CAG)nSINE,Alu
chr1180247483TC0.00167.FALSE
chr2128603119TC0.00340.FALSEAluSpSINE,Alu
chr116889596TC0.00905NBPF1-TRUE
chr679595097AG0.00712IRAK1BP1+FALSE
chr1174551853AC0.00079RNF169+FALSE
chr2160659996GA0.00177LY75-CD302,LY75-FALSE
chr115909744CT0.00100AGMAT-FALSE
chr342636141GA0.00224SEC22C,SS18L2+,-FALSE
chr7100278998CA0.00022GIGYF1-FALSE(A)nSINE,Alu
chr2198416735TG0.00257HSPE1-MOB4,MOB4+FALSE
chr116952920GA0.00475CROCCP2-FALSE
chr129446554CA0.00682EPB41,TMEM200B+,-FALSE
chr110519951TC0.00499.FALSEAluJrSINE,Alu
chr674304013TC3.72993E-06SLC17A5-TRUEAluSx3SINE,Alu
chr239212567TG0.00546SOS1-FALSE
chr3186288565AG0.00680DNAJB11+FALSE
chr8117858601TA0.00891RAD21-FALSE
chr1246829742TC0.00960CNST+FALSE(TGTG)nSINE,Alu
chr12125627187CT0.00055AACS+FALSE
chr1298943201AG9.51066E-07TMPO+TRUEAluSzSINE,Alu
chr1119245854TC0.00078E2F8-FALSE
chr131905886CA0.00026SERINC2+FALSE
chr416040617CT0.00032PROM1-FALSE
chr642855954AG3.50340E-05RPL7L1+TRUEAluSzSINE,Alu
chr1590820082AG0.00297.FALSEAluYSINE,Alu
chr145244432TA0.00154.FALSE
chr131532312CT0.00215PUM1-FALSE
chr126143725AT0.00920SEPN1+FALSEAluSxSINE,Alu
chr146076481AG0.00144NASP+TRUEAluSxSINE,Alu
chr13730400TC0.00584CEP104-TRUEAluSx3SINE,Alu
chr152520866CT0.00195TXNDC12-FALSE
chr1921907988CT0.00295ZNF100-FALSE
chr1213069114CA0.00681FLVCR1+FALSE
chr3183898428TG0.00611AP2M1+FALSE
chr7138730361TC0.00316ZC3HAV1-FALSEL2-1_AMiSINE,Alu
chr657034841GT0.00581ZNF451,LOC101927211+,-FALSE
chr1200375418CT0.00425ZNF281-FALSE
chr6108214773CT0.00265SEC63-FALSE
chr1745761102TG0.00296.FALSE
chr1450053348GA0.00067.FALSE7SLRNASINE,Alu
chr46689813CA0.00141.FALSEL2bSINE,Alu
chr1461112736TG0.00418SIX1-FALSE(T)nSINE,Alu
chr1184761312TC0.00308FAM129A-TRUEAluJoSINE,Alu
chr1089623865AC0.00348PTEN+FALSE
chr1200941185TG0.00729KIF21B-FALSE
chr1150703860TC0.00222CTSS-TRUEAluSxSINE,Alu
chr119466935TG0.00439IPO7+FALSE
chr176227022AG0.00759ACADM+FALSE
chr153289873AG0.00013ZYG11B+TRUEFRAMSINE,Alu
chr11337735TG3.46713E-05MRPL20-FALSE
chr136388197CT0.00315AGO1+FALSE
chr110517623TC0.00145.FALSEAluSx1SINE,Alu
chr642856176AG0.00202RPL7L1+TRUEAluSzSINE,Alu
chr1110136458AG0.00136GNAI3+FALSE
chr794060360TG0.00014COL1A2+FALSE
chr224225542AG0.00348.FALSEAluSq2SINE,Alu
chr121102501GA0.00148HP1BP3-FALSE
chr765618786AG3.58027E-08CRCP+TRUEAluSx3SINE,Alu
chr236776053TC0.00029CRIM1+FALSE
chr185785548CT0.00220DDAH1-FALSE
chr132833540TC0.00381BSDC1-TRUE
chr1109475635TC0.00458GPSM2,CLCC1+,-FALSEAluJoSINE,Alu
chr1772784932GA0.00444TMEM104+FALSE
chr16283439TC0.00786ICMT-TRUEAluSx3SINE,Alu
chr237331525TC0.00091.FALSEAluJbSINE,Alu
chr237872508GA5.12140E-05CDC42EP3-FALSE
chr168940885GA0.00500DEPDC1-FALSEMIRSINE,Alu
chr136068281TC0.00026PSMB2-TRUEAluScSINE,Alu
chr127202982TC0.00850.FALSEAluSq2SINE,Alu
chr237331201TC0.00291.FALSEAluSx1SINE,Alu
chr3181430508GA3.55222E-06SOX2-OT,SOX2+FALSE
chr170904800GT0.00772CTH+FALSE
chr193307477AG6.92611E-06FAM69A,RPL5+,-FALSE
chr110520331CT2.36721E-05.FALSEAluSx1SINE,Alu
chr1168220489AG0.00126.FALSEAluSz6SINE,Alu
chr1207250570AG0.00486PFKFB2+FALSE
chr117345246AT0.00812SDHB-FALSE
chr1740176809AT0.00860NKIRAS2+FALSEAluSzSINE,Alu
chr187573963TC0.00978HS2ST1+FALSE
chr340503555AT0.00177RPL14+FALSE
chr4108832727TC0.00071SGMS2,LOC101929595+,-FALSE
chr543609343CT0.00556NNT+FALSE
chr123636278AT0.00121HNRNPR-FALSE
chr110519982TC6.11297E-05.FALSEAluJrSINE,Alu
chr195362952TC0.00155CNN3-FALSE
chr16282400TC0.00118ICMT-TRUEAluSzSINE,Alu
chr128864435AG0.00088RCC1+FALSE
chr10117823566GT0.00433GFRA1-FALSE(ATC)nSINE,Alu
chr1256532056GC0.00743ESYT1+FALSE
chr193603196GA0.00627MTF2+FALSE
chr146032974TC0.00141AKR1A1+FALSE
chr346007825TC4.58354E-06FYCO1-FALSE
chr2217366194CA0.00359.FALSE
chr2191745643AC0.00011GLS+FALSE(GCA)nSINE,Alu
chr4152583924AT0.00284FAM160A1+FALSE
chr112024235CT0.00395PLOD1+FALSE
chr123408939TA1.04314E-06KDM1A+FALSE
chr1145512078AG0.00907NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr1269237057AG0.00259MDM2+TRUE
chr16651456AG0.00614KLHL21-FALSE
chr1610625406TC1.26372E-11EMP2-TRUEAluSxSINE,Alu
chr12125511312AG0.00638THRIL-FALSEAluSx1SINE,Alu
chr269688754TC0.00319AAK1-TRUEAluSq2SINE,Alu
chr110521130TC0.00860DFFA-TRUEAluYSINE,Alu
chr153288870AG0.00501ZYG11B+TRUEAluJoSINE,Alu
chr19161011TC7.97270E-05.FALSEAluJbSINE,Alu
chr1220871123AG0.00854C1orf115+FALSE
chr119542310TC9.10228E-06LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr2128602462TC0.00298.FALSEAluSq2SINE,Alu
chr19163334TC0.00632.FALSEAluSpSINE,Alu
chr3148748199CA3.38210E-05HLTF-FALSE
chr4129795663TA0.00165JADE1+FALSE
chr5125880589TC0.00122ALDH7A1-FALSE
chr167874849TC7.36358E-05SERBP1-TRUEAluSxSINE,Alu
chr1156565057TC0.00423GPATCH4-FALSE
chr1231377081CT6.17358E-06GNPAT+FALSE
chr16283306TC0.00558ICMT-TRUEAluSx3SINE,Alu
chr1590820095AG6.27827E-07.FALSEAluYSINE,Alu
chr116889502TC0.00178NBPF1-TRUEL1MC4SINE,Alu
chr110042955AG0.00430NMNAT1+TRUEAluScSINE,Alu
chr175288083TA0.00232RABEP1+FALSE
chr1916661541TC0.00120SLC35E1-TRUEAluSzSINE,Alu
chr1203277242TC0.00023BTG2+FALSE
chr4123816376AT0.00445FGF2,NUDT6+,-FALSE
chr119981886TG0.00082MINOS1-NBL1,NBL1+FALSE
chr1423300642CA0.00266MRPL52+FALSEMIRbSINE,Alu
chr1194801633AT0.00808SRSF8+FALSE
chr1475202312AG3.27721E-05FCF1+TRUEAluScSINE,Alu
chr1648386442AG0.00964LONP2,MIR5095+TRUEAluSz6SINE,Alu
chr116892918TC0.00158NBPF1-FALSE
chr1182569318GT0.00829RGS16-FALSE
chr237329347TC0.00155.FALSEAluJr4SINE,Alu
chr167518534CT0.00030SLC35D1-FALSE
chr126755136AG0.00279LIN28A+FALSEAluSx1SINE,Alu
chrX77083915TC0.00075MAGT1-TRUEAluSzSINE,Alu
chr1100440553AG9.79324E-05SLC35A3+TRUEAluJbSINE,Alu
chr3155660833AG0.00020.FALSEAluSzSINE,Alu
chr1379188534TA0.00698RNF219-AS1,RNF219+,-FALSE
chr127678712AG0.00215SYTL1+TRUEAluSx1SINE,Alu
chr1161488421GT0.00588FCGR2A+FALSEAluSz6SINE,Alu
chr1145689798AG0.00200NBPF20,NBPF10+TRUEAluJbSINE,Alu
chr1736104904AG0.00442HNF1B-FALSEG-richSINE,Alu
chr1145283718GA0.00989NBPF20,NOTCH2NL+FALSE
chr521883662TG0.00108CDH12-FALSE
chr243625184TA0.00587THADA-FALSE
chr1205687358TC0.00692NUCKS1-FALSE(T)nSINE,Alu
chr1183105534TC0.00424LAMC1+FALSE
chr642856937AG0.00122RPL7L1+TRUEAluSpSINE,Alu
chr1182568729CG0.00012RGS16-FALSE
chr1585185205TC0.00459WDR73,SCAND2P+,-FALSEFLAM_CSINE,Alu
chr353319203CG0.00453DCP1A-FALSE
chr1145512930AG5.47366E-06NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr2201774641TC0.00928.FALSEAluJr4SINE,Alu
chr6118029818TG0.00119NUS1+FALSE
chr189447839CG0.00808KYAT3,RBMXL1-FALSE
chr348787640TC0.00320PRKAR2A-TRUEAluSpSINE,Alu
chr116893691CA0.00170NBPF1-FALSE
chr225962254AT0.00375ASXL2-FALSE
chr123884661GA0.00205ID3-FALSE
chr117730CA0.00256WASH7P-FALSE
chr1149581866CG0.00774LINC00623,LINC00869,LOC103091866+FALSEL2bSINE,Alu
chr122418284GT0.00024CDC42+FALSE(T)nSINE,Alu
chr111298093CT7.93954E-12MTOR-FALSE
chr1120163247TC0.00365ZNF697-FALSE
chr2025427756AG0.00396GINS1+TRUEAluSzSINE,Alu
chr1113243048CT0.00023MOV10+FALSE
chr165299558CT0.00162JAK1-FALSE
chr1145329095CG0.00261NBPF20,NBPF10+FALSE
chr517276055TC0.00784BASP1+FALSE(TC)nSINE,Alu
chr16282236TC0.00388ICMT-TRUEAluSzSINE,Alu
chr237328097TC0.00091.FALSE
chr192148839TC0.00259TGFBR3-FALSE
chr1138266CT0.00802LOC729737-FALSE
chr344790636TC0.00083KIAA1143-TRUEAluYSINE,Alu
chr133150642AG0.00316SYNC,RBBP4+,-FALSEAluJoSINE,Alu
chr110517567TC0.00578.FALSEAluSx1SINE,Alu
chr119934893CA0.00171MINOS1,MINOS1-NBL1,RPS14P3+FALSE
chr638670804GC0.00400GLO1-FALSE
chr116889820CT0.00012NBPF1-FALSE
chrX123043142AG0.00045XIAP+TRUEAluSzSINE,Alu
chr1541593352AG0.00083.FALSEAluSz6SINE,Alu
chr417803616TC4.59289E-05DCAF16-TRUEAluYSINE,Alu
chr145976260CT0.00043MMACHC+FALSE
chr133148367CG0.00439SYNC,RBBP4+,-FALSEAluSgSINE,Alu
chr115818081TC9.65448E-05CASP9-TRUEAluJbSINE,Alu
chr110518591AT0.00545.FALSE
chr340503561AT0.00012RPL14+FALSE

Differential Expression Gene Analysis