Dataset Overview
RBPPES1
Knock-MethodshRNA
RBP FamilyPescadillo_N
Biosample NameK562
Tissue TypeHaematopoietic_and_lymphoid_tissue
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR891DYO
PlatformHiSeq
Pubmed ID32252787

PES1 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of PES1
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of PES1


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr256150864CT0.00615EFEMP1-FALSE
chr1176132119GC0.00134RFWD2-FALSEL3bSINE,Alu
chr7129474438CT0.00034UBE2H-FALSE
chr1168218522AG9.71811E-05.FALSEAluSzSINE,Alu
chr47765043GA0.00071AFAP1,AFAP1-AS1+,-FALSE
chr1681744038TC6.34278E-05CMIP+FALSE(CCGC)nSINE,Alu
chr153291408AG0.00931ZYG11B+TRUEAluJrSINE,Alu
chr128661767AG0.00144MED18+TRUEAluSgSINE,Alu
chr3136667405TC0.00190NCK1+FALSE
chr116889820CT0.00709NBPF1-FALSE
chr119934742GT8.15259E-08MINOS1,MINOS1-NBL1,RPS14P3+FALSE
chr127202789TC0.00026.FALSEAluSq2SINE,Alu
chr155062960GA0.00542ACOT11+FALSE
chr126143727AT0.00602SEPN1+FALSEAluSxSINE,Alu
chr4165998078TC0.00567TMEM192-TRUEAluSxSINE,Alu
chr375474643TC0.00850FAM86DP-TRUEAluJoSINE,Alu
chr1687864349CA0.00981SLC7A5-FALSE
chr237328075TC0.00863.FALSE
chr1144641025GA0.00850CD82+FALSE
chr2153512503CT0.00082PRPF40A-FALSE
chr138423199AT0.00192SF3A3-FALSEAluJoSINE,Alu
chr1100316589AG0.00147AGL+FALSE
chr3197611262AG0.00208.FALSEAluSx1SINE,Alu
chr171683647TC0.00763SMYD4-TRUEAluJbSINE,Alu
chr5170832637CT0.00071NPM1+FALSE
chr1788840TC0.00415LINC01128+FALSE
chr126856462TG0.00201RPS6KA1+FALSE
chr133147934AG0.00251SYNC,RBBP4+,-FALSEAluSxSINE,Alu
chr7295960TA2.17882E-07FAM20C+FALSE
chr613790848TC0.00344MCUR1-TRUEAluSx1SINE,Alu
chr237327662TC0.00058.FALSE
chr27036682AT0.00335RSAD2+FALSE
chr2128952075AG0.00919UGGT1+TRUEAluSx1SINE,Alu
chr296915238TC0.00510.FALSEAluJrSINE,Alu
chr1450361164CT0.00103ARF6+FALSE(T)nSINE,Alu
chr110520072TC0.00115.FALSEAluSxSINE,Alu
chr897506373CG0.00579SDC2+FALSE(CCCCGAG)nSINE,Alu
chr136067838TC2.61513E-05PSMB2-TRUEAluSzSINE,Alu
chr14103372465CA0.00600TRAF3+FALSE(AC)nSINE,Alu
chr1161088583TG0.00822NIT1+FALSE
chr1160302244TC0.00310COPA-TRUE
chr117735266GA0.00471RCC2-FALSE
chr127190857CT0.00160SFN+FALSE
chr654805688AC0.00220FAM83B+FALSE
chr1145512014AG0.00144NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr1541597559AG0.00127.FALSEAluSz6SINE,Alu
chr285548639AG0.00687TGOLN2-FALSE
chr1765335291TC0.00113PSMD12-TRUEAluSxSINE,Alu
chr1184762524TC0.00471FAM129A-TRUEAluSzSINE,Alu
chr1161488017TC5.55712E-05FCGR2A+FALSEMER57FSINE,Alu
chr5157184013AG0.00631LSM11+TRUEAluYSINE,Alu
chr637142192CT0.00850PIM1+FALSE
chr167874859TC0.00214SERBP1-TRUEAluSxSINE,Alu
chr2135208354AT0.00249MGAT5+FALSE
chr1151742798TC0.00626OAZ3+FALSE
chr116575726TC0.00916FBXO42-FALSE
chr16283306TC0.00609ICMT-TRUEAluSx3SINE,Alu
chr122109370GA0.00371USP48-FALSE
chr9139417333GA0.00463NOTCH1-FALSE
chr153291420AG0.00213ZYG11B+TRUEAluJrSINE,Alu
chr224494671TC0.00244ITSN2-FALSE(TATCCT)nSINE,Alu
chr2202030311TA0.00732CFLAR+FALSESVA_ASINE,Alu
chr1206566195CT0.00334SRGAP2+FALSE
chr274442407AG0.00122MTHFD2+FALSE
chr133148251AG0.00389SYNC,RBBP4+,-FALSEAluSgSINE,Alu
chr120977599CG0.00489PINK1,PINK1-AS+,-FALSE
chr120982216TA0.00065DDOST-FALSE
chr1931939GA0.00428.FALSE
chr11252309AT0.00403CPSF3L-FALSEAluSxSINE,Alu
chr140705200GA3.20116E-08RLF+FALSE
chr1755761035GA0.00125MSI2+FALSE
chr127678712AG0.00215SYTL1+TRUEAluSx1SINE,Alu
chr333893987AG0.00123PDCD6IP+FALSE
chr158946773CT0.00037OMA1-FALSE
chr5139931626TG0.00490SRA1-FALSE
chr5133956668GA0.00419SAR1B-FALSE
chr133148635AG0.00168SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr76442892CA0.00675RAC1+FALSE
chr1114438951AG0.00012AP4B1-AS1,AP4B1+,-FALSE
chr23609064GA0.00614RNASEH1-AS1+FALSEMER33SINE,Alu
chr16704652CT0.00000DNAJC11-FALSE
chr115394279GC0.00215KAZN+FALSE
chr41982726CT0.00828WHSC1+FALSE
chr5159520661TC0.00776PWWP2A-FALSE
chr344791398TC0.00081KIAA1143-TRUEAluJrSINE,Alu
chr131905889AG0.00483SERINC2+FALSE
chr350150360AG0.00827RBM5+TRUEAluSxSINE,Alu
chr126901090CT0.00056RPS6KA1+FALSE
chr236776053TC0.00029CRIM1+FALSE
chr155207982CA0.00063MROH7-TTC4,TTC4+FALSE
chr717384440AG0.00271AHR+TRUEAluSxSINE,Alu
chr10121437034GC0.00120BAG3+FALSE
chr119543364TC0.00447LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr227887286GA0.00404SLC4A1AP+FALSE
chr1172003767CA0.00297CLPB-FALSE
chr2234203547TC0.00476ATG16L1+FALSE
chr133149373AG0.00264SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr131905887AC0.00221SERINC2+FALSE
chr220648946CT0.00531RHOB+FALSE
chr1569803GA0.00695.FALSE
chr315114759GA1.99109E-05RBSN-FALSE
chr1110136683AC0.00183GNAI3+FALSE
chr117299387TA0.00941CROCC+FALSE
chr1590820083AG4.07036E-06.FALSEAluYSINE,Alu
chr642849746AG0.00042RPL7L1+TRUEAluSzSINE,Alu
chr115896199GA0.00483DNAJC16+FALSEAluSpSINE,Alu
chr572801321TA0.00212BTF3+FALSE
chr110520076TC0.00075.FALSEAluSxSINE,Alu
chr110520764TC0.00542DFFA-TRUEAluSc8SINE,Alu
chr1145689601AG0.00517NBPF20,NBPF10+TRUEAluSgSINE,Alu
chr1423795204GT0.00938BCL2L2-PABPN1,PABPN1+FALSE
chr110521254TC0.00041DFFA-TRUEAluYSINE,Alu
chr825272447AT0.00770DOCK5+FALSE
chr1742113064AG0.00014LSM12-FALSE(A)nSINE,Alu
chr2183817957TA0.00031NCKAP1-FALSE
chrM5265CA0.00026.FALSE
chr4169911126CA0.00122CBR4-FALSE
chr116893686GC0.00386NBPF1-FALSE
chr140539203AT0.00179PPT1-FALSE
chr2217366196TA0.00207.FALSE
chr1211921723AG4.36683E-06LPGAT1-FALSE
chr1585185045TC0.00210WDR73,SCAND2P+,-FALSEAluSzSINE,Alu
chr128800380CA0.00186PHACTR4+FALSE
chr226399214GA0.00187GAREM2+FALSE
chr5145493224AT0.00251LARS-FALSE
chr1161160460TA0.00298ADAMTS4-FALSE(CA)nSINE,Alu
chr2132275343GT0.00334LOC150776+FALSE
chr1145689693AG0.00088NBPF20,NBPF10+TRUEAluJbSINE,Alu
chr320025679AG0.00292RAB5A,PP2D1+,-FALSE
chr1115313038GA0.00144SIKE1-FALSE
chr921863621CA0.00123MTAP+FALSEAluYSINE,Alu
chr299812447AG0.00525MRPL30+TRUEAluSxSINE,Alu
chr1145513113AG0.00505NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr271298486TC0.00408NAGK+FALSE
chr9119162301AT0.00778PAPPA,PAPPA-AS1+,-FALSE(GAAA)nSINE,Alu
chr1248175093AG0.00690SLC48A1+FALSE
chr1205686520AG0.00980NUCKS1-FALSE
chr136067838TC0.00348PSMB2-TRUEAluSzSINE,Alu
chr35222483TG1.83612E-05ARL8B+FALSE
chr8145159713GC0.00137MAF1+FALSE
chr187379498TG0.00784SEP15-FALSE
chr1144618144AG0.00725NBPF20,NBPF9+FALSE
chr136067886TC0.00925PSMB2-TRUEAluSzSINE,Alu
chr185732582GA0.00371BCL10-FALSEAluSz6SINE,Alu
chr129519665TC0.00680MECR-TRUEAluJbSINE,Alu
chr7130629624TC0.00568LINC-PINT-TRUE
chr2206987635TC0.00930.FALSEAluJbSINE,Alu
chr4177251328CT9.41230E-05SPCS3+FALSE
chr899053985TG4.76792E-05RPL30-FALSE
chr237328097TC0.00018.FALSE
chr1689623619AG0.00275SPG7+FALSE
chr1687440117CT1.93168E-06ZCCHC14-FALSE
chr1212114663GA0.00858INTS7-FALSE
chr5171533782TC0.00039STK10-FALSE
chr337317605AG9.02711E-05GOLGA4+FALSE
chr185787118GC0.00104DDAH1-FALSE
chr2223765491CT0.00689ACSL3+FALSE
chr16283264TC0.00127ICMT-TRUEAluSx3SINE,Alu
chr1176736712AG0.00027ACER3+TRUEAluSzSINE,Alu
chr224223251AG0.00489UBXN2A+TRUEAluScSINE,Alu
chr16651728CT0.00118KLHL21-FALSE
chr114106402AT0.00914PRDM2+FALSE
chr13545184GT0.00347TPRG1L+FALSE
chr2208619742AG0.00500CCNYL1+TRUEAluJbSINE,Alu
chrX84532996TG0.00801POF1B-FALSE
chr1148556087GC0.00106.FALSE
chr2128060859TA0.00016MAP3K2-FALSE
chr725160004TC0.00915CYCS-TRUE
chr631324078GT0.00480.FALSE
chr44864940CT0.00247MSX1+FALSE
chr996439041AT0.00751PHF2+FALSE
chr42940085TC8.20099E-05NOP14-AS1,NOP14+,-FALSEAluSpSINE,Alu
chr310192608AG0.00245VHL+TRUEAluSx1SINE,Alu
chr626096636AG0.00531.FALSEAluSgSINE,Alu
chr152306087CT0.00022NRDC-FALSE(TCA)nSINE,Alu
chr42940485TC0.00676NOP14-AS1,NOP14+,-FALSEAluJoSINE,Alu
chr1205737682AG0.00320RAB29-FALSEAluSq2SINE,Alu
chr574072648TA0.00036NSA2+FALSE
chr116889414TC0.00858NBPF1-TRUEL1MC4SINE,Alu
chr110519982TC0.00572.FALSEAluJrSINE,Alu
chr439552148TC0.00011UGDH-AS1,SMIM14+,-FALSEAluSxSINE,Alu
chr146075663AG0.00061NASP+TRUEAluSx4SINE,Alu
chr147843356AT0.00556CMPK1+FALSE
chr1264842925AG0.00345.FALSEAluSzSINE,Alu
chr413604418GC2.95746E-07BOD1L1-FALSE
chr9132268957AG0.00316LINC00963+TRUEAluYf1SINE,Alu
chr856985609GT0.00134RPS20-FALSE
chr2238673923CA0.00813LRRFIP1+FALSE(CA)nSINE,Alu
chr1143189473CA0.00572LOC102723769-FALSE
chr12990912AC0.00244WNK1+FALSE
chr5175816758TA0.00528.FALSE
chr145976262AC0.00010MMACHC+FALSE
chr242577806TA0.00276COX7A2L-FALSE
chr110044272AG0.00737NMNAT1+TRUEAluSx1SINE,Alu
chr345721891AG0.00163LIMD1,LIMD1-AS1+,-FALSEAluJbSINE,Alu
chr237330435TC3.14905E-06.FALSEAluSq2SINE,Alu
chr121808159GA9.34000E-05NBPF3+FALSE
chr3156258308TC9.02162E-07SSR3-TRUEAluYk3SINE,Alu
chr127481039AG0.00021SLC9A1-FALSE
chr1921907988CT0.00295ZNF100-FALSE
chr12133298339AG1.45756E-07PGAM5+TRUEAluSpSINE,Alu
chr16283264TC0.00521ICMT-TRUEAluSx3SINE,Alu
chr133068435AG0.00081ZBTB8A+TRUEAluYSINE,Alu
chr357613144TC0.00959DENND6A,PDE12+,-FALSEAluSzSINE,Alu
chr1773940888TC2.69053E-06ACOX1-TRUEAluSx1SINE,Alu
chr19644558AG0.00644.FALSEAluSxSINE,Alu
chr1155695985AG0.00031DAP3+TRUEAluSpSINE,Alu
chr136529575AG2.40551E-05.FALSEAluJrSINE,Alu
chr13730400TC6.07343E-08CEP104-TRUEAluSx3SINE,Alu
chr315114395TC0.00333RBSN-TRUEAluYSINE,Alu
chr417804279GA0.00606DCAF16-FALSE(A)nSINE,Alu
chr552251222GT0.00808.FALSE(GATA)nSINE,Alu
chr16282587TC0.00487ICMT-TRUE
chr1590819619AG5.14004E-06.FALSEAluSxSINE,Alu
chr1168523567TC0.00079CPT1A-TRUEAluSqSINE,Alu
chr111782984AG0.00542.FALSEAluSxSINE,Alu
chr127205214TC0.00799.FALSEAluScSINE,Alu
chr16283548AG0.00286ICMT-FALSE
chr812879062TC0.00035KIAA1456+FALSE
chr1118502767GA0.00624WDR3,SPAG17+,-FALSE(GT)nSINE,Alu
chr128825418AG0.00725PHACTR4+TRUEAluSgSINE,Alu
chr175288081CT0.00518RABEP1+FALSE
chr1205759960CT4.24096E-05SLC41A1-FALSE
chr3196769982CG0.00131DLG1-FALSE
chr1145689537AG0.00341NBPF20,NBPF10+TRUEAluSgSINE,Alu
chr1145512059AG0.00053NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr1225357680TC0.00861ETFRF1+FALSE
chr255462747TA0.00163RPS27A+FALSE
chr456291623GT0.00490TMEM165+FALSE
chr146075612AG0.00153NASP+TRUEAluSx4SINE,Alu
chr17909317GA0.00766ABR-FALSE
chr642856019AG0.00184RPL7L1+TRUEAluSzSINE,Alu
chr110093457CT0.00777UBE4B+FALSE
chr347125385GA0.00496SETD2-FALSE
chr298409998GT0.00261TMEM131-FALSE
chr1115592820TC0.00107TSPAN2-FALSE
chr285772407TA0.00232GGCX-FALSE
chr4843695AG0.00602GAK-FALSE
chr1045499895GA0.00255ZNF22+FALSE
chr12125512494AG0.00427.FALSEAluYSINE,Alu
chr13654747CA0.00691TP73-AS1-FALSE
chr1117645998AG0.00057.FALSE
chr144088117GT0.00731PTPRF+FALSE(T)nSINE,Alu
chr9131872857CG0.00151CRAT-FALSE
chr144818549CT0.00108ERI3-FALSE
chr186049392CA0.00322CYR61+FALSE
chr123519504TA3.21384E-05HTR1D-FALSE
chr1154557171GA0.00045ADAR-FALSEA-richSINE,Alu
chr146033497TC0.00719AKR1A1+FALSEAluYk3SINE,Alu
chr116200163AG0.00112SPEN+FALSE
chr7131241052AG0.00663PODXL-FALSE(GGCGAC)nSINE,Alu
chr830536544TC0.00122GSR-TRUEAluSpSINE,Alu
chr344791553TC0.00298KIAA1143-TRUEAluJrSINE,Alu
chr1144594308GA0.00577NBPF20+FALSE
chr16282400TC0.00809ICMT-TRUEAluSzSINE,Alu
chr138326774TC0.00664INPP5B-TRUEAluJrSINE,Alu
chr110517276TC0.00252.FALSEAluJrSINE,Alu
chr455147769CT0.00079PDGFRA+FALSE
chr1144930940TC0.00181NBPF20,PDE4DIP+,-FALSE
chr124296869GT0.00973.FALSEAluSgSINE,Alu
chr110518591AT0.00545.FALSE
chr126143725AT0.00112SEPN1+FALSEAluSxSINE,Alu
chr1939982631AG0.00316TIMM50+TRUEAluJrSINE,Alu
chr1326500AG0.00189.FALSE
chr9116022896TC9.26547E-05SLC31A1+FALSE
chr720177525TC0.00052MACC1,LOC101927668-TRUEAluSxSINE,Alu
chr4185549875AT0.00616CASP3-FALSE
chr1100654773TC0.00810DBT-TRUEAluSzSINE,Alu
chr8144681777GT0.00383TIGD5+FALSE
chr197084578AG0.00346ZNF557+TRUEAluJbSINE,Alu
chr1674655591TG0.00652RFWD3-FALSEAluSxSINE,Alu
chr345721891AG0.00417LIMD1,LIMD1-AS1+,-FALSEAluJbSINE,Alu
chr116889864CA0.00020NBPF1-FALSE
chr153289759AG0.00383ZYG11B+TRUEAluSzSINE,Alu
chr1179326295AG0.00035SOAT1+TRUE
chr2227659846TG0.00653IRS1-FALSEG-richSINE,Alu
chr11152631CA0.00517SDF4-FALSE
chr1116239841AT0.00069VANGL1+FALSE
chr138326704TC0.00328INPP5B-TRUEAluJrSINE,Alu
chr417628548AG0.00991.FALSEAluSzSINE,Alu
chr2191556844TC0.00024NAB1+FALSE
chr126158908GC0.00181MTFR1L,AUNIP+,-FALSE
chr2228421461GC0.00069AGFG1+FALSE
chr1015120275TC0.00017ACBD7-TRUEL1PA7SINE,Alu
chr1779838088TC6.81311E-05.FALSEAluSxSINE,Alu
chr5170837890CA0.00030.FALSE
chr2217366541AG0.00071.FALSEAluSzSINE,Alu
chr286731651GA0.00378CHMP3,RNF103-CHMP3-FALSE
chr489181477TC7.00483E-05PPM1K-TRUEAluSx1SINE,Alu
chr155316322AG0.00266DHCR24-FALSE
chr11419700AG0.00671ATAD3B+TRUEAluYk2SINE,Alu
chr1143186597GA0.00644LOC102723769-FALSE
chr19324451CT0.00266H6PD+FALSE
chr1860998527CG0.00078KDSR-FALSE(AGAGAGAC)nSINE,Alu
chr345266555TC1.22536E-07TMEM158-FALSE
chr1158424898GA0.00153.FALSE
chr442022464CA0.00438SLC30A9+FALSE
chr16683581AC0.00504PHF13+FALSE
chr110516656CT0.00808.FALSE
chr3195243007AC3.91570E-06PPP1R2-FALSE
chr116703162AT0.00726MRPL17-FALSE
chr76501830GA0.00110KDELR2-FALSE
chr5134086670CA0.00585CAMLG+FALSE
chr110517290TC0.00060.FALSEAluJrSINE,Alu
chr110517550TC0.00457.FALSEAluSx1SINE,Alu
chr246414708GA0.00155PRKCE+FALSE
chr126161104CA0.00030AUNIP-FALSEAluSc8SINE,Alu
chr15102516512GA0.00041WASH3P+FALSE
chr116952481AG0.00093CROCCP2-FALSE
chr1145282600AC0.00391NBPF20,NOTCH2NL+FALSEMER126SINE,Alu
chr136068184TC0.00150PSMB2-TRUEAluScSINE,Alu
chr286248309TC0.00808LOC90784-FALSE
chr140537922AG0.00686CAP1+FALSE(A)nSINE,Alu

Differential Expression Gene Analysis