RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	53289892	A	G	0.00079	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr2	37328075	T	C	0.00335		.	FALSE
chr1	6583036	T	C	0.00296	NOL9	-	TRUE	AluSx4	SINE,Alu
chr1	26143726	G	T	0.00560	SEPN1	+	FALSE	AluSx	SINE,Alu
chr4	39460539	G	A	0.00323	RPL9	-	FALSE
chr1	53289940	A	G	0.00245	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr1	229631734	T	C	0.00611	NUP133	-	FALSE
chr1	19543364	T	C	0.00447	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	109818158	C	T	4.51493E-05	CELSR2	+	FALSE
chr10	79800443	A	G	0.00971	RPS24	+	FALSE
chr14	53242652	T	C	0.00081	GNPNAT1	-	TRUE	AluJr	SINE,Alu
chr1	15896199	G	A	0.00483	DNAJC16	+	FALSE	AluSp	SINE,Alu
chr1	173862270	G	C	0.00197		.	FALSE	AluSz6	SINE,Alu
chr1	16891365	G	A	1.42078E-05	NBPF1	-	FALSE
chr2	29023121	G	T	0.00077	PPP1CB	+	FALSE
chr4	177252326	A	G	0.00554	SPCS3	+	TRUE
chr20	54963756	T	C	0.00476	AURKA	-	TRUE	AluSq10	SINE,Alu
chr4	169911126	C	A	0.00122	CBR4	-	FALSE
chr1	27202844	T	C	0.00076		.	FALSE	AluSq2	SINE,Alu
chr3	156258283	T	C	0.00686	SSR3	-	TRUE	AluYk3	SINE,Alu
chr12	48539888	C	A	0.00088	PFKM	+	FALSE
chr1	36068231	T	C	0.00582	PSMB2	-	TRUE	AluSc	SINE,Alu
chr12	125512540	A	G	7.43833E-09		.	FALSE
chr1	53291425	A	G	0.00507	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	148003734	T	C	0.00015	NBPF8	-	TRUE	L1MC4	SINE,Alu
chr2	99812464	A	G	1.88485E-05	MRPL30	+	TRUE	AluSx	SINE,Alu
chr1	10517485	T	C	0.00260		.	FALSE	AluSx1	SINE,Alu
chr12	51325280	A	G	0.00370	METTL7A	+	TRUE	AluSq2	SINE,Alu
chr1	35644504	A	T	0.00242	SFPQ	-	FALSE
chr3	10285030	G	A	0.00384	IRAK2	+	FALSE
chr1	217804325	G	A	0.00229	GPATCH2	-	FALSE
chr15	43767774	G	C	0.00057	TP53BP1	-	FALSE
chr1	46830447	A	C	0.00168	NSUN4	+	FALSE	LTR108a_Mam	SINE,Alu
chr6	160101723	T	C	0.00234	SOD2	-	TRUE	AluSz	SINE,Alu
chr1	54692331	T	C	0.00549	SSBP3	-	FALSE	(T)n	SINE,Alu
chr3	15113810	T	C	0.00201	RBSN	-	TRUE	AluSz6	SINE,Alu
chr2	26399214	G	A	0.00187	GAREM2	+	FALSE
chr2	202029998	T	A	0.00350	CFLAR	+	FALSE	(TTA)n	SINE,Alu
chr1	183112505	T	C	0.00525	LAMC1	+	FALSE
chr8	117858602	A	G	0.00133	RAD21	-	FALSE
chr1	19984107	G	A	0.00963	MINOS1-NBL1,NBL1	+	FALSE
chr19	42753034	A	G	0.00883	ERF	-	FALSE
chr1	12073251	G	T	0.00957	MFN2	+	FALSE
chr1	1345002	A	G	0.00141		.	FALSE	AluSg	SINE,Alu
chr1	15991645	T	C	0.00361		.	FALSE	AluSp	SINE,Alu
chr1	35646125	C	T	0.00027	SFPQ	-	FALSE
chr1	6282315	T	C	5.02629E-05	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	21100856	A	C	0.00010	HP1BP3	-	FALSE	(AC)n	SINE,Alu
chr8	100890376	G	T	0.00920	COX6C	-	FALSE
chr3	196670098	T	C	0.00019	NCBP2-AS2	+	FALSE
chr1	19543353	T	C	0.00377	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	109474776	A	G	0.00088	GPSM2,CLCC1	+,-	FALSE	AluSz	SINE,Alu
chr17	65334868	T	C	0.00096	PSMD12	-	TRUE	AluSq	SINE,Alu
chr5	37291504	T	C	0.00878		.	FALSE	AluSx3	SINE,Alu
chr1	204526795	A	G	0.00199	MDM4	+	TRUE	AluSx	SINE,Alu
chr3	101284940	T	C	1.85568E-05	TRMT10C	+	FALSE
chr17	65335316	T	C	0.00296	PSMD12	-	TRUE	AluSx	SINE,Alu
chr1	20978304	T	A	0.00018	PINK1-AS,DDOST	-	FALSE	AluY	SINE,Alu
chr7	129474438	C	T	0.00034	UBE2H	-	FALSE
chr1	21101368	T	C	0.00031	HP1BP3	-	TRUE	AluSc	SINE,Alu
chr1	249139806	G	A	0.00983	ZNF672	+	FALSE
chr1	36067821	T	C	1.12344E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	155144757	T	C	0.00758	KRTCAP2	-	FALSE	Tigger19b	SINE,Alu
chr2	208620143	A	G	0.00605	CCNYL1	+	TRUE	EutTc1-N1	SINE,Alu
chr1	16912099	G	C	0.00450	NBPF1	-	FALSE
chr9	80333361	C	T	0.00382	GNAQ	-	FALSE
chr2	3609064	G	A	0.00212	RNASEH1-AS1	+	FALSE	MER33	SINE,Alu
chr1	28929961	T	A	0.00068	TAF12	-	FALSE
chr1	150704486	T	C	0.00157	CTSS	-	TRUE	AluJo	SINE,Alu
chr2	37230734	C	T	0.00192	HEATR5B	-	FALSE
chr1	54493443	C	A	0.00872	TMEM59	-	FALSE	AluSz6	SINE,Alu
chr3	48787219	A	G	0.00024	PRKAR2A	-	FALSE
chr2	203744550	T	C	0.00037		.	FALSE	AluSx1	SINE,Alu
chr4	77996987	T	C	0.00240	CCNI	-	FALSE
chr3	189713205	T	C	4.97145E-05	P3H2	-	FALSE
chr1	28826023	A	G	0.00342	PHACTR4	+	FALSE	AluJb	SINE,Alu
chr16	1819020	A	T	0.00258	MAPK8IP3	+	FALSE
chr2	219523584	C	T	0.00299	ZNF142	-	FALSE
chr1	204526727	A	G	0.00033	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	16945409	T	A	0.00105	CROCCP2	-	FALSE
chr2	114356360	G	A	0.00520	WASH2P	+	FALSE
chr3	10191943	G	A	2.29886E-07	VHL	+	FALSE
chr9	136897584	C	A	0.00060	BRD3	-	FALSE	A-rich	SINE,Alu
chr3	14986138	T	C	1.80576E-11	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	184661932	A	G	0.00063	EDEM3	-	FALSE
chr1	33148045	A	G	0.00264	SYNC,RBBP4	+,-	FALSE	AluSx	SINE,Alu
chr5	56177849	C	G	0.00921	MAP3K1	+	FALSE	(CAA)n	SINE,Alu
chr1	205577901	G	A	0.00904	ELK4	-	FALSE
chr4	128756579	A	G	0.00501		.	FALSE	AluSx	SINE,Alu
chr1	142449	G	A	0.00073		.	FALSE	MIRb	SINE,Alu
chr2	132278176	T	G	0.00291	LOC150776	+	FALSE
chr1	59121768	G	C	0.00196	MYSM1	-	FALSE
chr1	65147002	C	T	6.62669E-07	CACHD1	+	FALSE
chr1	32801724	T	G	0.00816	MARCKSL1	-	FALSE
chr1	115299508	A	T	0.00070	CSDE1	-	FALSE
chr3	136667405	T	C	0.00190	NCK1	+	FALSE
chr1	26143727	A	T	0.00602	SEPN1	+	FALSE	AluSx	SINE,Alu
chr17	65334856	T	C	1.38810E-06	PSMD12	-	TRUE	AluSq	SINE,Alu
chr15	71124666	C	A	4.50846E-10	LARP6	-	FALSE
chr1	10520117	T	C	0.00078		.	FALSE	AluSx	SINE,Alu
chr1	65720330	A	C	0.00211		.	FALSE
chr1	87213182	A	T	0.00072	SH3GLB1	+	FALSE
chr2	17897488	T	C	0.00430	SMC6	-	FALSE
chr12	133298937	A	G	0.00240	PGAM5	+	TRUE	AluSg	SINE,Alu
chr3	10193796	A	G	2.82806E-06	VHL	+	TRUE	AluSx	SINE,Alu
chr1	15909850	C	G	0.00660	AGMAT	-	FALSE
chr3	48485452	T	A	0.00363	TMA7	+	FALSE
chr1	120162442	T	C	0.00065	ZNF697	-	FALSE
chr2	27887286	G	A	0.00404	SLC4A1AP	+	FALSE
chr1	16890331	C	G	0.00226	NBPF1	-	FALSE
chr1	17085028	G	A	0.00803	MST1L,LOC102724562	-	FALSE
chr1	9162224	T	C	0.00523		.	FALSE	AluSx	SINE,Alu
chr1	32372358	C	T	0.00303	PTP4A2	-	FALSE	(CA)n	SINE,Alu
chr6	13788387	T	C	0.00240	MCUR1	-	TRUE	AluSx	SINE,Alu
chr22	38285016	A	G	0.00030		.	FALSE	AluSz	SINE,Alu
chr1	27992824	G	A	0.00503	IFI6	-	FALSE
chr1	46828700	A	G	0.00093	NSUN4	+	FALSE
chr12	124105948	C	T	0.00778	EIF2B1	-	FALSE
chr12	49745500	A	G	0.00265	DNAJC22	+	TRUE	AluSx3	SINE,Alu
chr2	74442550	A	T	0.00242		.	FALSE
chr1	40538317	C	A	0.00178	CAP1	+	FALSE
chr3	195393406	C	T	0.00690	SDHAP2	+	FALSE
chr1	160967755	C	T	0.00563	F11R	-	FALSE	(T)n	SINE,Alu
chr1	1252309	A	T	0.00403	CPSF3L	-	FALSE	AluSx	SINE,Alu
chr1	143135057	G	A	0.00403	LOC102723769	-	FALSE
chr1	16534255	C	G	0.00980	ARHGEF19	-	FALSE
chr3	196670086	T	G	1.91816E-05	NCBP2-AS2	+	FALSE
chr2	121979980	G	A	0.00525	TFCP2L1	-	FALSE	L1MB8	SINE,Alu
chr4	110635488	G	T	8.00508E-05	PLA2G12A	-	FALSE
chr9	136209397	G	C	0.00709	MED22	-	FALSE
chr1	233514975	G	T	0.00584	MLK4	+	FALSE
chr3	100083460	G	A	0.00041	TOMM70	-	FALSE	FAM	SINE,Alu
chr3	194349178	C	T	0.00881	TMEM44	-	FALSE
chr1	100150196	A	G	0.00176	PALMD	+	TRUE	AluJr	SINE,Alu
chr2	37076594	T	C	0.00198	STRN	-	FALSE
chr1	145513016	A	G	0.00400	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr3	52289709	G	C	4.88711E-11	WDR82	-	FALSE	MIR	SINE,Alu
chr1	160966351	T	C	4.07282E-11	F11R	-	TRUE	AluSg	SINE,Alu
chr3	194789663	T	C	0.00754	XXYLT1	-	FALSE	MARNA	SINE,Alu
chr11	68524809	T	C	0.00129	CPT1A	-	TRUE
chr1	28836975	A	G	0.00782	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr1	183213770	G	C	0.00734	LAMC2	+	FALSE
chr4	119526740	C	G	0.00435	LOC729218	+	FALSE
chr1	145273345	T	C	0.00640	NBPF20,NOTCH2NL	+	FALSE
chr1	19543352	T	C	0.00098	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr19	57802824	G	A	0.00924	ZNF460	+	FALSE
chr1	45975498	A	G	9.09033E-05	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr9	102744711	A	T	0.00675	ERP44	-	FALSE
chr1	19199221	C	T	0.00095	ALDH4A1	-	FALSE
chr1	87209658	G	A	0.00219	SH3GLB1	+	FALSE
chr1	206581246	T	C	0.00210	SRGAP2	+	FALSE
chr1	19984100	G	C	0.00563	MINOS1-NBL1,NBL1	+	FALSE
chr1	150337289	G	T	0.00020	RPRD2	+	FALSE
chr2	33623905	G	T	0.00262	LTBP1	+	FALSE
chr11	8709315	A	G	0.00307	RPL27A	+	TRUE	AluYk2	SINE,Alu
chr5	125961210	A	G	0.00966	PHAX	+	TRUE	AluSz	SINE,Alu
chr1	931939	G	A	0.00428		.	FALSE
chr1	87811100	A	T	0.00084	LMO4	+	FALSE
chr4	88060832	T	C	0.00531	AFF1	+	FALSE
chr2	37329300	T	C	0.00092		.	FALSE	AluJr4	SINE,Alu
chr2	17965390	T	C	0.00713	GEN1	+	FALSE	L1M4	SINE,Alu
chr1	33148706	A	G	0.00087	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	109884775	T	G	0.00026	SORT1	-	FALSE
chr1	36067811	T	C	0.00467	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	108742123	C	G	1.29742E-06	SLC25A24	-	FALSE
chr2	191556849	A	T	0.00158	NAB1	+	FALSE
chr4	128756632	A	G	0.00072		.	FALSE	AluSx	SINE,Alu
chr5	115428334	G	T	0.00265	COMMD10	+	FALSE
chr1	22109370	G	A	0.00371	USP48	-	FALSE
chr3	196557274	C	T	0.00285	PAK2	+	FALSE
chr8	25272425	C	T	0.00605	DOCK5	+	FALSE
chr1	20978302	A	T	0.00038	PINK1-AS,DDOST	-	FALSE	AluY	SINE,Alu
chr1	148556726	G	T	0.00023		.	FALSE
chr1	242011534	A	G	0.00248	EXO1	+	FALSE
chr4	41673604	T	C	0.00580	LIMCH1	+	FALSE
chr4	53732381	C	T	0.00433	RASL11B	+	FALSE	(TTTCTTT)n	SINE,Alu
chr3	179115635	T	C	0.00453	GNB4	-	TRUE	AluSg7	SINE,Alu
chr3	10192826	A	G	0.00037	VHL	+	TRUE	AluSx1	SINE,Alu
chr6	43747963	G	C	0.00274	VEGFA	+	FALSE
chr8	140475147	C	T	0.00719		.	FALSE
chr1	28825427	A	G	0.00484	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr15	41590972	A	G	2.40282E-05	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr12	1611798	C	T	0.00338	LINC00942	+	FALSE
chr2	128950548	A	G	0.00589	UGGT1	+	TRUE	AluSc	SINE,Alu
chr1	201846617	A	C	0.00380	IPO9	+	FALSE	(CA)n	SINE,Alu
chr19	1037984	T	C	0.00908	CNN2	+	FALSE	(TT)n	SINE,Alu
chr19	1863170	G	A	0.00204	KLF16	-	FALSE
chr2	183642652	G	A	0.00309	DNAJC10	+	FALSE
chr1	20976163	C	T	0.00091	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr11	118940957	C	G	0.00642	VPS11	+	FALSE
chr1	1650832	A	G	0.00241	CDK11B,CDK11A	-	FALSE
chr2	201774393	T	C	0.00971		.	FALSE	AluSz	SINE,Alu
chr9	100847551	G	T	0.00543	TRIM14	-	FALSE	MIR	SINE,Alu
chr1	46828734	T	C	0.00604	NSUN4	+	FALSE
chr4	170017406	A	T	0.00534	SH3RF1	-	FALSE
chr1	112003957	G	A	0.01000	ATP5F1	+	FALSE	Helitron2Na_Mam	SINE,Alu
chr4	3514695	A	G	1.35580E-12	LRPAP1	-	FALSE
chr2	198368112	G	A	0.00127	HSPE1,HSPE1-MOB4	+	FALSE
chr11	44641025	G	A	0.00850	CD82	+	FALSE
chr1	75671215	C	T	0.00019	SLC44A5	-	FALSE
chr1	26755643	A	G	0.00728	LIN28A	+	FALSE	AluSc	SINE,Alu
chr1	19655758	T	A	0.00044	PQLC2	+	FALSE	AluSz	SINE,Alu
chr7	6202056	G	A	0.00019	CYTH3	-	FALSE
chr1	16933583	T	C	0.00050	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr2	9629306	G	T	0.00255	ADAM17	-	FALSE
chr1	79356400	C	T	0.00714	ADGRL4	-	FALSE
chr1	1650801	T	C	0.00359	CDK11B,CDK11A	-	FALSE
chr19	16661483	T	C	0.00824	SLC35E1	-	TRUE	AluSz	SINE,Alu
chr1	46828653	T	A	0.00920	NSUN4	+	FALSE
chr1	6283306	T	C	0.00609	ICMT	-	TRUE	AluSx3	SINE,Alu
chr3	45722047	A	G	0.00085	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu

RBP	EIF4B
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR313CHR
Platform	HiSeq
Pubmed ID	32252787

EIF4B - Target Gene Network