Dataset Overview
RBPGTF2F1
Knock-MethodshRNA
RBP FamilyNon-canonical_RBP
Biosample NameK562
Tissue TypeHaematopoietic_and_lymphoid_tissue
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR188IPO
PlatformHiSeq
Pubmed ID32252787

GTF2F1 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of GTF2F1
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of GTF2F1


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr1757279281AG0.00055PRR11+TRUEAluSq2SINE,Alu
chr11288481CA0.00013MXRA8-FALSE
chr194930345GA0.00223ABCD3+FALSE
chr1178887208AT0.00239RALGPS2+FALSE
chr140219065CT0.00232PPIE+FALSE
chr136067870TC0.00513PSMB2-TRUEAluSzSINE,Alu
chr1109240642AC0.00373PRPF38B+FALSE
chr1450792933CT0.00156ATP5S+FALSEAluSxSINE,Alu
chr1110040310AG2.45230E-05CYB561D1+FALSE
chr195658346TA0.00961TMEM56-RWDD3,LOC101928118,TMEM56+,-FALSE
chr288895123TC0.00706EIF2AK3-FALSE
chr1109818162TC0.00253CELSR2+FALSE
chr345722381AG0.00996LIMD1,LIMD1-AS1+,-FALSEAluSzSINE,Alu
chr1145693958AG3.55543E-06NBPF20,NBPF10+TRUEAluSzSINE,Alu
chr1156084582TC0.00195LMNA+FALSE
chr146828653TA0.00920NSUN4+FALSE
chr2100897573GA0.00231LONRF2-FALSE
chr581571876AT0.00013RPS23-FALSE
chr125894468CG0.00357LDLRAP1+FALSEMIRbSINE,Alu
chr581571875AT0.00072RPS23-FALSE
chr8145159708AG0.00101MAF1+FALSE
chr1298942824AG2.17067E-06TMPO+TRUEAluScSINE,Alu
chr1542503334CT0.00448TMEM87A-FALSE(T)nSINE,Alu
chr2201676441GA0.00140LOC101927795,BZW1+,-FALSE
chr127052982TG0.00199C12orf57+FALSEU7SINE,Alu
chr568426312GA0.00344SLC30A5+FALSE
chr1269160464AG0.00041.FALSEAluJbSINE,Alu
chr185278156CT0.00663.FALSEAluSz6SINE,Alu
chr6126661502GT0.00873CENPW+FALSE
chr417629921AG0.00454.FALSEMER90SINE,Alu
chr381698130TC2.93981E-08GBE1-FALSE
chr467846CA0.00573ZNF718,ZNF595+FALSEAluYk3SINE,Alu
chr1193054154GA0.00757TROVE2+FALSE
chr238975954AC0.00381SRSF7-FALSE
chr2233446266CT0.00177EIF4E2+FALSE
chr153289940AG0.00245ZYG11B+TRUEFRAMSINE,Alu
chr2217366197TA0.00018.FALSE
chr111979809AC0.00836KIAA2013-FALSE
chr133148216AG0.00824SYNC,RBBP4+,-FALSEAluSgSINE,Alu
chr3125248854AC0.00014OSBPL11-FALSE
chr1203713133GA0.00984ATP2B4+FALSE
chr146075709AG0.00431NASP+TRUEAluSx4SINE,Alu
chr1131452750AG0.00326DNAJC24+TRUEAluSx1SINE,Alu
chr225042625CG0.00766CENPO,ADCY3+,-FALSE
chr116893721AC0.00179NBPF1-FALSE
chr13731655GT0.00985CEP104-FALSE
chr286947783CT0.00515RNF103-CHMP3,RMND5A+,-FALSE
chr1761502458TA0.00317TANC2+FALSE
chr12125512444AG4.63106E-05.FALSEAluYSINE,Alu
chr152375424TC0.00109RAB3B-FALSE
chr719736460AG6.53378E-05TWISTNB-FALSEMER33SINE,Alu
chr237331025TC0.00055.FALSEAluSx1SINE,Alu
chr153291425AG0.00517ZYG11B+TRUEAluJrSINE,Alu
chr312624321AG2.86985E-06MKRN2+FALSE
chr3169807548TC0.00665PHC3-TRUEAluSx1SINE,Alu
chr128864435AG0.00088RCC1+FALSE
chr1225683184GT0.00741ENAH-FALSE
chr625600772AG0.00269CARMIL1+FALSE
chr690344221TC0.00809LYRM2-TRUEAluJoSINE,Alu
chr1144932151GT0.00643NBPF20,PDE4DIP+,-FALSE
chr1211923085TG0.00674LPGAT1-FALSE
chr16283260TC0.00054ICMT-TRUEAluSx3SINE,Alu
chr4165998019TC0.00849TMEM192-TRUEAluSxSINE,Alu
chr29630231CT0.00895ADAM17-FALSE
chr1117644949CG0.00440TTF2+FALSE
chr2232325426AT0.00547NCL-FALSE(TCA)nSINE,Alu
chr452888499GA8.91315E-05SGCB-FALSE
chr2217366570AG0.00332.FALSEAluSzSINE,Alu
chr115818081TC9.65448E-05CASP9-TRUEAluJbSINE,Alu
chr47764017TC0.00028AFAP1,AFAP1-AS1+,-FALSE
chr1232532505GA0.00385.FALSE
chr1095163809GT0.00453MYOF-FALSE
chr128835847AG4.14471E-06SNHG3,RCC1+TRUEAluSx4SINE,Alu
chr116577908GC0.00686FBXO42-FALSE
chr28823941GA0.00053ID2+FALSE
chr540826638CA0.00749LOC100506548-FALSELTR78SINE,Alu
chr1156675377GC0.00935CRABP2-FALSE
chr110520117TC0.00188.FALSEAluSxSINE,Alu
chr119670869AG0.00568CAPZB-FALSE
chr417803616TC0.00046DCAF16-TRUEAluYSINE,Alu
chr9125609940TA0.00044.FALSE
chr1900721TC0.00032KLHL17+FALSE(TTTA)nSINE,Alu
chr2227660628TG0.00025IRS1-FALSE
chr237327666TC0.00028.FALSE
chr1144932200GT0.00492NBPF20,PDE4DIP+,-FALSE
chr4144442611TC0.00899SMARCA5+FALSE
chr145975331AG0.00081MMACHC+TRUEAluSg7SINE,Alu
chr9136209402AG0.00431MED22-FALSE(CAGGG)nSINE,Alu
chr2217366674AG0.00219.FALSEAluSzSINE,Alu
chr133148361GC0.00428SYNC,RBBP4+,-FALSEAluSgSINE,Alu
chr1145281656AT0.00202NBPF20,NOTCH2NL+FALSE
chr1666923452AG0.00065PDP2+TRUEAluSzSINE,Alu
chr1109818161CT0.00382CELSR2+FALSE
chr136614708CT0.00201TRAPPC3-FALSE
chr827661063TA0.00138ESCO2+FALSE(AC)nSINE,Alu
chr119585493AG0.00199MRTO4+TRUEAluSc8SINE,Alu
chr2206983797TC0.00145.FALSEAluSxSINE,Alu
chr267631831GA0.00423ETAA1+FALSE
chr2178129412GT0.00071NFE2L2-FALSE(CGG)nSINE,Alu
chr1156044213GT7.72130E-05MEX3A-FALSE(T)nSINE,Alu
chr1541590972AG2.40282E-05OIP5-AS1+TRUEAluSx1SINE,Alu
chr138155699TG0.00824C1orf109-FALSEAluSx1SINE,Alu
chr3122283291CA0.00061DTX3L,PARP9+,-FALSE
chr119542269TC0.00744LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr11549354GA0.00383.FALSEHAL1SINE,Alu
chr642855979AG8.12389E-06RPL7L1+TRUEAluSzSINE,Alu
chr237331116TC0.00481.FALSEAluSx1SINE,Alu
chr1148251009TC0.00065NBPF8,NBPF14,NBPF9-TRUE
chr1648388382AG0.00301MIR5095+TRUEAluSzSINE,Alu
chr7158590740AT0.00211ESYT2-FALSE
chr115736656AG0.00958EFHD2+FALSE
chr2206480819CT0.00663PARD3B+FALSE
chr368685888GA0.00280.FALSE
chr1757281034AG0.00111PRR11+TRUEAluSzSINE,Alu
chr3127790249AG0.00056RUVBL1,SEC61A1+,-FALSE
chr42931174TC0.00211ADD1+FALSE
chr110517512TC0.00646.FALSEAluSx1SINE,Alu
chr1153599390TC0.00135S100A13-FALSE
chr3156258283TC0.00686SSR3-TRUEAluYk3SINE,Alu
chr116946437CT0.00257CROCCP2-FALSE
chr116529016CT0.00024ARHGEF19-FALSE
chr110520819TC0.00022DFFA-TRUEAluSc8SINE,Alu
chr489181451TC8.32748E-05PPM1K-TRUEAluSx1SINE,Alu
chr3196557356TA0.00032PAK2+FALSE
chr2206987632TC0.00671.FALSEAluJbSINE,Alu
chr192426238TG0.00129TIMM13,TMPRSS9+,-FALSE
chr2198572083TA0.00272MARS2+FALSE
chr125889571GA0.00344LDLRAP1+FALSE
chr2128064446GT0.00652MAP3K2-FALSE(GT)nSINE,Alu
chr13395039GA0.00027ARHGEF16+FALSE
chr138423181TG0.00793SF3A3-FALSEAluJoSINE,Alu
chr1610625108TC7.88488E-10EMP2-TRUEAluSx3SINE,Alu
chr1214529320TG0.00365PTPN14-FALSEAluJbSINE,Alu
chr1013234356AT3.19668E-07MCM10+FALSE
chr51574319TA0.00158SDHAP3-FALSE
chr4177252326AG0.00554SPCS3+TRUE
chr211321779AT0.00033ROCK2-FALSEAluSx1SINE,Alu
chr1011912065CG0.00191PROSER2-AS1,PROSER2+,-FALSE
chr743679092GC1.19724E-06COA1-FALSE
chr155317685GA0.00121DHCR24-FALSEMIRbSINE,Alu
chr5159492103TG0.00332TTC1+FALSE
chr2217366897AG0.00440.FALSEAluSz6SINE,Alu
chr195362514GT0.00279CNN3-FALSE
chr16160958AG0.00967KCNAB2+FALSE
chr862538200AT0.00552ASPH-FALSE
chr344485914TC0.00920ZNF445-FALSEMIRbSINE,Alu
chr237330487TC0.00242.FALSEAluSq2SINE,Alu
chr12133297956AG4.23080E-06PGAM5+TRUEAluJoSINE,Alu
chr195362949AT0.00012CNN3-FALSE(A)nSINE,Alu
chr141326886CG0.00085CITED4-FALSE
chr1201845882GA0.00890IPO9+FALSE
chr1109240641TA0.00090PRPF38B+FALSE
chr1205737659CT0.00024RAB29-FALSEAluSq2SINE,Alu
chr116893691CA0.00764NBPF1-FALSE
chr110520153TC0.00907.FALSEAluSxSINE,Alu
chr6160101723TC0.00234SOD2-TRUEAluSzSINE,Alu
chr192975244TA0.00220EVI5-FALSE
chr1760522250AG0.00267METTL2A+FALSE
chr3122293773AT0.00852DTX3L+FALSE
chr356763328TC0.00546ARHGEF3-FALSE
chr543380781TC0.00739CCL28-TRUEAluJbSINE,Alu
chr5122359498AC0.00362PPIC-FALSE(AC)nSINE,Alu
chr76063466TA0.00153EIF2AK1-FALSE
chr2178406762GT0.00708AGPS+FALSE
chr1100654769TC0.00318DBT-TRUEAluSzSINE,Alu
chr163881552CT0.00293ALG6+FALSE
chr1146215189GC0.00226NBPF20,NBPF10,NBPF25P+FALSE
chr3185826740TG0.00041ETV5-FALSE
chr2206984202TC0.00849.FALSEAluSxSINE,Alu
chr1145281633CA0.00022NBPF20,NOTCH2NL+FALSE
chr19163465TC0.00342.FALSEAluSpSINE,Alu
chr1658195430GC0.00325CSNK2A2-FALSE(AC)nSINE,Alu
chr1120612037TG0.00044NOTCH2-FALSE(CGC)nSINE,Alu
chr345126558CT0.00000CDCP1-FALSE
chr1765335362TC3.02375E-05PSMD12-TRUEAluSxSINE,Alu
chr3195961254CT0.00119.FALSE
chr1160965287TC0.00766F11R-TRUEAluScSINE,Alu
chr1610626615CT0.00489EMP2-FALSE(T)nSINE,Alu
chr7138730361TC0.00316ZC3HAV1-FALSEL2-1_AMiSINE,Alu
chr124935369AG0.00454NCMAP+TRUEAluJbSINE,Alu
chr2207942527AT0.00107KLF7-FALSE
chr1256510710AC0.00050RPL41+FALSE
chr337031951GA0.00154EPM2AIP1-FALSE(A)nSINE,Alu
chr154692331TC0.00549SSBP3-FALSE(T)nSINE,Alu
chr237327662TC0.00058.FALSE
chr119543456TC0.00386LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr1256510697GA0.00989RPL41+FALSE
chr146075604AG0.00365NASP+TRUEAluSx4SINE,Alu
chr1939981168AG0.00446TIMM50+TRUEAluJrSINE,Alu
chr19160900TC0.00010.FALSEAluJbSINE,Alu
chr128661767AG0.00144MED18+TRUEAluSgSINE,Alu
chr9115446725TC0.00037INIP-TRUEAluJrSINE,Alu
chr1047221452TC0.00869.FALSEAluJbSINE,Alu
chr189649522TC0.00358GBP4-TRUEAluJbSINE,Alu
chr116907328GT0.00099NBPF1-FALSE
chr1207250570AG0.00486PFKFB2+FALSE
chr1118472401CT0.00396WDR3+FALSE
chr1120163248GA4.97770E-06ZNF697-FALSE
chr1204521724AG0.00851MDM4+TRUEAluSgSINE,Alu
chr72767939TC0.00028AMZ1,GNA12+,-FALSE
chr3183209052TC0.00041KLHL6-TRUEAluSqSINE,Alu
chr136534934AG0.00464.FALSEAluJoSINE,Alu
chr136068369TC5.31121E-05PSMB2-TRUEAluScSINE,Alu
chr133149496AG0.00469SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr1251325349CG0.00225METTL7A+FALSEAluSq2SINE,Alu
chr191486838GC0.00514ZNF644-FALSE
chr6170887693GC0.00045PDCD2-FALSE
chr2035409827TC0.00267SOGA1-TRUEAluSxSINE,Alu
chr314526656AG0.00189SLC6A6+FALSE
chr1610625050TC1.54421E-05EMP2-TRUEAluSx3SINE,Alu
chr1121133733GA0.00455SRGAP2-AS1,SRGAP2B,SRGAP2C+,-FALSEL1MB4SINE,Alu
chr5122359499CA0.00277PPIC-FALSE(AC)nSINE,Alu
chr323958355CT0.00997NKIRAS1,RPL15+,-FALSE
chr1541593268AG0.00084.FALSEAluSz6SINE,Alu
chr1565442546TC0.00564CLPX-TRUEAluSg4SINE,Alu
chr19163400TC0.00726.FALSEAluSpSINE,Alu
chr2101635538CT0.00069TBC1D8,RPL31+,-FALSECharlie17SINE,Alu
chr2201842323TC0.00254FAM126B-TRUEAluJbSINE,Alu
chr775958149AC0.00050YWHAG-FALSE
chr4152025795TA0.00516RPS3A+FALSE
chr358112440AG8.00661E-07FLNB+FALSE
chr1244869241CA0.00213DESI2+FALSE
chr144088547CA0.00018PTPRF+FALSEA-richSINE,Alu
chr3196556843GA4.00732E-06PAK2+FALSE
chr167874859TC0.00214SERBP1-TRUEAluSxSINE,Alu
chr2208619320AG0.00339CCNYL1+FALSEEutTc1-N1SINE,Alu
chr217965390TC0.00713GEN1+FALSEL1M4SINE,Alu
chr2198255334AT0.00551.FALSE
chr1939669600AG0.00619PAK4+FALSE(TG)nSINE,Alu
chr417628548AG0.00991.FALSEAluSzSINE,Alu
chr2178406765TA0.00325AGPS+FALSE
chr1206635247CT0.00291SRGAP2+FALSE(AC)nSINE,Alu
chr830536450TC8.74573E-07GSR-TRUEAluSpSINE,Alu
chr127202831TC0.00392.FALSEAluSq2SINE,Alu
chr1154321623GA0.00782ATP8B2+FALSE
chr119542401TC0.00010LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr439551031TC0.00068UGDH-AS1,SMIM14+,-FALSEAluSzSINE,Alu
chr315483744AG0.00083EAF1+FALSE
chr1150704633TC1.58455E-05CTSS-TRUEAluJoSINE,Alu
chr127992800CA5.71645E-05IFI6-FALSEFAMSINE,Alu
chr179126336CG1.94494E-06IFI44+FALSE
chr5118731273AC0.00843.FALSE
chr1144931101GA0.00358NBPF20,PDE4DIP+,-FALSE
chr697592900CA0.00076MMS22L-FALSE
chr1160966434TC0.00175F11R-TRUEAluSgSINE,Alu
chr9128729384GC0.00059PBX3+FALSE
chr110519975TC5.61936E-05.FALSEAluJrSINE,Alu
chr111141187CG0.00819EXOSC10-FALSE
chr174672323CA0.00616FPGT-TNNI3K,FPGT+FALSEX12_DNASINE,Alu
chr153289686AG0.00063ZYG11B+TRUEAluSzSINE,Alu
chr1540955103AG0.00372.FALSEAluJbSINE,Alu
chr210179657AC0.00035.FALSEL1ME4bSINE,Alu
chr133148691AG0.00207SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr3112299732AG0.00189SLC35A5+FALSE
chr1149818508TC7.96693E-05.FALSEMLT1DSINE,Alu
chr12241376CT0.01000SKI+FALSE
chr1618794286CT0.00633RPS15A-FALSE
chr119810693GC0.00042CAPZB-FALSE
chr128662186AG0.00403MED18+TRUEAluSq2SINE,Alu
chr11252723TC7.44553E-05CPSF3L-TRUEAluSpSINE,Alu
chr726708303GT0.00095SKAP2-FALSEAluSx3SINE,Alu
chr1154554945AG0.00877ADAR-FALSE
chr720177525TC0.00052MACC1,LOC101927668-TRUEAluSxSINE,Alu
chr652860746TG0.00011.FALSE7SKSINE,Alu
chr1100654813TC0.00352DBT-TRUEAluSzSINE,Alu
chr286252049TC0.00271POLR1A-FALSEAluSq2SINE,Alu
chr116945570AG0.00131CROCCP2-FALSE
chr11419746AG0.00016ATAD3B+TRUEAluYk2SINE,Alu
chr11662764TC0.00505SLC35E2-TRUEAluYSINE,Alu
chr47764148GA2.22190E-11AFAP1,AFAP1-AS1+,-FALSE
chr1765334967TC0.00045PSMD12-TRUEAluSqSINE,Alu
chr124796069AC0.00403NIPAL3+FALSE

Differential Expression Gene Analysis