RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chrX	123045407	A	G	0.00153	XIAP	+	TRUE	AluJo	SINE,Alu
chr2	24225006	A	G	0.00141		.	FALSE	AluSx	SINE,Alu
chr12	124146094	A	G	2.86040E-06	GTF2H3	+	TRUE	AluSx4	SINE,Alu
chr3	57548976	A	G	0.00132	PDE12	+	TRUE	FRAM	SINE,Alu
chr1	70717293	G	A	0.00716	SRSF11	+	FALSE
chr1	201846634	C	A	0.00852	IPO9	+	FALSE	(CA)n	SINE,Alu
chr14	50053348	G	A	0.00067		.	FALSE	7SLRNA	SINE,Alu
chr1	52991638	C	T	0.00125	ZCCHC11	-	FALSE
chr2	109401281	T	G	0.00116	RANBP2	+	FALSE
chr1	43272842	A	T	5.86577E-06	SVBP	-	FALSE
chr1	19246181	A	G	1.12993E-05	IFFO2	-	FALSE
chr5	256514	G	C	0.00198	SDHA	+	FALSE
chr1	31351513	G	A	0.00265	SDC3	-	FALSE
chr22	18571477	A	G	4.57932E-05	PEX26	+	TRUE	AluSz	SINE,Alu
chr2	96934504	T	C	0.00021	CIAO1	+	FALSE
chr19	19792403	A	G	1.20818E-05	ZNF101	+	TRUE	AluJb	SINE,Alu
chr7	94297293	G	T	0.00573	PEG10	+	FALSE
chr2	55462751	T	A	0.00613	RPS27A	+	FALSE
chr1	1419743	A	G	0.00848	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr1	144014068	T	C	0.00029		.	FALSE
chr3	160219095	G	A	0.00620	KPNA4	-	FALSE	A-rich	SINE,Alu
chr4	17802956	T	C	0.00480	DCAF16	-	TRUE	AluSz	SINE,Alu
chr10	75632760	C	T	0.00013	CAMK2G	-	FALSE
chr3	197612430	A	G	0.00052		.	FALSE	AluSp	SINE,Alu
chr1	16890130	A	C	0.00138	NBPF1	-	FALSE
chr21	34728095	A	G	8.47848E-05	IFNAR1	+	TRUE	AluSc	SINE,Alu
chr12	56510702	T	C	0.00052	RPL41	+	FALSE
chr3	141667149	T	C	0.00273	TFDP2	-	TRUE	AluSx	SINE,Alu
chr1	179042555	A	G	0.00922	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr15	72635903	C	T	0.00334	HEXA	-	FALSE
chr1	82453022	A	G	0.00532	ADGRL2	+	FALSE
chr14	24661017	G	T	0.00771	TM9SF1	-	FALSE
chr3	63987389	T	C	0.00662	ATXN7	+	FALSE
chr1	11783009	A	G	7.55078E-05		.	FALSE	AluSx	SINE,Alu
chr3	42826041	T	G	0.00019	HIGD1A	-	FALSE
chr1	19934742	G	T	8.15259E-08	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr1	16889413	T	C	1.64789E-05	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr1	32827843	G	C	0.00275	FAM229A	-	FALSE
chr1	6583066	T	C	0.00173	NOL9	-	TRUE	AluSx4	SINE,Alu
chr17	49042381	T	C	0.00931	SPAG9	-	TRUE	AluJb	SINE,Alu
chr4	84525986	G	T	0.00081	GPAT3	+	FALSE	(TTGTT)n	SINE,Alu
chr17	5288081	C	T	0.00518	RABEP1	+	FALSE
chr1	117530273	A	G	0.00270	PTGFRN	+	FALSE
chr4	165998958	T	C	0.00021	TMEM192	-	TRUE	Alu	SINE,Alu
chr1	21810693	A	G	0.00370	NBPF3	+	FALSE	L1MC4	SINE,Alu
chr1	51822219	G	A	0.00223	EPS15	-	FALSE
chr5	130729522	T	G	0.00506	CDC42SE2	+	FALSE	(T)n	SINE,Alu
chr1	146400122	C	G	0.00039	NBPF20,NBPF10,NBPF25P,NBPF12	+	FALSE
chr1	86049302	A	G	0.00114	CYR61	+	FALSE
chr1	108742123	C	G	1.29742E-06	SLC25A24	-	FALSE
chr5	43574976	T	C	0.00613	NNT-AS1	-	TRUE	AluSq2	SINE,Alu
chr1	38002068	C	T	0.00962	SNIP1	-	FALSE
chr1	35648844	C	A	0.00313	SFPQ	-	FALSE	AluSx3	SINE,Alu
chr1	77759578	A	G	0.00031	AK5	+	FALSE
chr5	77655330	T	C	0.00050	SCAMP1-AS1	-	TRUE	AluSx4	SINE,Alu
chr1	36067677	T	C	0.00048	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	6684050	G	A	2.21294E-05	PHF13	+	FALSE
chr3	49396588	T	C	0.00239	RHOA	-	FALSE
chr5	176026131	A	T	0.00979	GPRIN1	-	FALSE
chr1	233514975	G	T	0.00584	MLK4	+	FALSE
chr3	49395692	G	A	0.00049	GPX1	-	FALSE	(GCC)n	SINE,Alu
chr12	60173406	C	T	0.00708	SLC16A7	+	FALSE
chr1	65693725	C	T	0.00202	AK4	+	FALSE
chr1	79125148	G	A	0.00203	IFI44	+	FALSE
chr6	44222158	T	A	0.00781	SLC35B2	-	FALSE
chr19	63697	G	A	0.00742	WASH5P	-	FALSE
chr1	43917637	G	A	0.00164	SZT2,HYI	+,-	FALSE
chr19	42375549	A	G	4.56329E-05		.	FALSE	AluSx	SINE,Alu
chr1	46093396	G	A	0.00048	GPBP1L1	-	FALSE	A-rich	SINE,Alu
chr1	10520130	T	C	0.00355		.	FALSE	AluSx	SINE,Alu
chr3	182632684	G	A	0.00116	ATP11B	+	FALSE
chr3	73116437	C	G	1.00237E-05	PPP4R2	+	FALSE
chr1	109240643	A	C	0.00608	PRPF38B	+	FALSE
chr6	74133990	T	C	0.00201		.	FALSE	AluY	SINE,Alu
chr1	36644564	C	T	1.56500E-06	MAP7D1	+	FALSE
chr1	148577409	C	A	0.00897	NBPF15	+	FALSE
chr1	25688276	A	G	0.00015	TMEM50A	+	FALSE
chr16	89623607	A	G	0.00915	SPG7	+	FALSE
chr1	179326879	A	G	0.00232	SOAT1	+	TRUE	AluJo	SINE,Alu
chr3	69026314	G	A	0.00881	EOGT	-	FALSE	AluSz6	SINE,Alu
chr9	96439041	A	T	0.00751	PHF2	+	FALSE
chr1	40219280	T	C	0.00025	PPIE	+	FALSE
chr2	61416411	T	G	0.00146	USP34	-	FALSE	AluSc8	SINE,Alu
chr1	93827764	A	G	0.00053	DR1	+	FALSE
chr12	109039004	C	A	0.00564	CORO1C	-	FALSE
chr3	14986110	T	C	0.00051	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr19	39433139	T	G	0.00235	FBXO17	-	FALSE	AluJb	SINE,Alu
chr1	20978294	T	A	0.00985	PINK1-AS,DDOST	-	FALSE
chr1	31905884	G	A	2.48126E-05	SERINC2	+	FALSE
chr1	44401225	T	C	0.00802	ARTN	+	FALSE
chr1	153533813	A	T	0.00451	S100A2	-	FALSE
chr12	56815652	C	T	1.92663E-05	TIMELESS	-	FALSE
chr1	209602381	G	A	0.00075	MIR205HG	+	FALSE	AluJb	SINE,Alu
chr11	65544342	T	C	3.74920E-05	AP5B1	-	TRUE	AluJb	SINE,Alu
chr17	57279234	A	G	0.00293	PRR11	+	TRUE	AluSq2	SINE,Alu
chr1	67874859	T	C	0.00071	SERBP1	-	TRUE	AluSx	SINE,Alu
chr3	183889337	A	T	3.46641E-05	DVL3	+	FALSE
chr1	151668295	A	C	0.00576	SNX27	+	FALSE
chr7	38764459	T	C	0.00789	VPS41	-	TRUE	AluSp	SINE,Alu
chr14	53109677	T	C	5.62031E-05	ERO1A	-	FALSE
chr1	10043527	A	G	0.00811	NMNAT1	+	TRUE	AluSx3	SINE,Alu
chr1	36068281	T	C	0.00201	PSMB2	-	TRUE	AluSc	SINE,Alu
chr6	158613393	A	T	0.00108	GTF2H5	+	FALSE
chr1	932618	C	G	0.00569		.	FALSE
chr1	23689522	G	T	0.00570	ZNF436	-	FALSE
chr2	128064446	G	T	0.00066	MAP3K2	-	FALSE	(GT)n	SINE,Alu
chr4	16258050	C	T	0.00617	TAPT1-AS1	+	FALSE
chr11	76733946	A	G	0.00725	ACER3	+	FALSE	A-rich	SINE,Alu
chr14	53242746	T	C	0.00051	GNPNAT1	-	TRUE	AluJr	SINE,Alu
chr3	194361676	C	T	0.00378	LSG1	-	FALSE	MSTA	SINE,Alu
chr14	75202412	A	G	5.03546E-10	FCF1	+	TRUE	AluSc	SINE,Alu
chr1	28150601	A	T	0.00558	STX12	+	FALSE
chr6	96054540	G	T	0.00358	MANEA	+	FALSE
chr1	179041693	T	C	0.00845	FAM20B	+	FALSE
chr2	191069434	G	A	0.00680	HIBCH	-	FALSE
chr1	230979247	G	A	0.00137	C1orf198	-	FALSE
chr1	158067060	T	A	0.00114	KIRREL	+	FALSE
chr15	86288387	C	T	0.00809	AKAP13	+	FALSE
chr7	120740103	G	T	0.00601	CPED1	+	FALSE
chr1	146650289	C	T	0.00967	PDIA3P1	+	FALSE
chr2	37331565	T	C	0.00121		.	FALSE	AluJb	SINE,Alu
chr2	37331745	T	C	0.00097		.	FALSE	AluJb	SINE,Alu
chr12	133298417	A	G	0.00084	PGAM5	+	TRUE	AluSp	SINE,Alu
chr1	218617066	A	T	0.00036	TGFB2-OT1,TGFB2	+	FALSE
chr6	34254585	G	T	0.00519		.	FALSE	AluSq2	SINE,Alu
chr1	9331254	A	G	0.00793	H6PD	+	TRUE	AluSx	SINE,Alu
chr1	1152310	C	T	0.00133	SDF4	-	FALSE
chr1	1252662	T	C	0.00235	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr1	10520331	C	T	0.00043		.	FALSE	AluSx1	SINE,Alu
chr1	16893813	A	G	7.34801E-05	NBPF1	-	FALSE
chr1	10520532	T	C	0.00150		.	FALSE	AluSx1	SINE,Alu
chr2	55516938	A	T	0.00265	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr5	14510067	G	T	0.00130	TRIO	+	FALSE
chr1	117617705	A	G	0.00031	TTF2	+	FALSE
chr6	56972883	T	C	0.00939	ZNF451	+	FALSE	AluY	SINE,Alu
chr4	120979130	T	C	0.00729		.	FALSE	AluSg4	SINE,Alu
chr1	19543457	T	C	0.00059	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr15	64455123	G	T	1.10189E-06	PPIB	-	FALSE
chr16	4935146	C	T	0.00676	PPL	-	FALSE
chr1	203713133	G	A	0.00984	ATP2B4	+	FALSE
chr1	155161725	G	A	0.00240	MUC1	-	FALSE
chr1	117532509	C	A	0.00521	PTGFRN	+	FALSE
chr5	14397238	T	C	0.00552	TRIO	+	FALSE
chr1	115110683	A	C	0.00168	BCAS2	-	FALSE
chr2	232319524	T	A	0.00245	NCL	-	FALSE
chr1	36068295	T	C	0.00076	PSMB2	-	TRUE	AluSc	SINE,Alu
chr8	11701297	T	C	0.00288	CTSB	-	TRUE	AluSx1	SINE,Alu
chr1	100548868	T	C	8.06321E-05	MFSD14A	+	FALSE
chr4	169847647	A	T	0.00328	PALLD	+	FALSE
chr3	44791547	T	C	0.00184	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr2	37331275	T	C	0.00884		.	FALSE	AluSx1	SINE,Alu
chr1	138156	G	T	0.00177	LOC729737	-	FALSE
chr16	10623545	T	C	0.00142	EMP2	-	TRUE	AluSp	SINE,Alu
chr1	115313028	T	A	0.00448	SIKE1	-	FALSE	AluSx1	SINE,Alu
chr1	10517672	T	C	0.00090		.	FALSE	AluSx1	SINE,Alu
chr1	120839682	A	G	0.00764	FAM72B	+	FALSE
chr1	142688506	T	C	0.00337		.	FALSE
chr1	145324364	C	G	0.00343	NBPF20,NBPF10	+	FALSE
chr1	201939479	T	A	0.00645	TIMM17A	+	FALSE
chr3	39449137	T	C	0.00000	RPSA	+	FALSE
chr6	3266908	G	A	0.00974	PSMG4	+	FALSE
chr1	16096934	C	T	0.00336	FBLIM1	+	FALSE
chr1	154321623	G	A	0.00782	ATP8B2	+	FALSE
chr1	100490000	A	G	0.00066	SLC35A3	+	TRUE	AluSg	SINE,Alu
chr1	16953672	C	T	0.00243	CROCCP2	-	FALSE
chr1	142660072	T	G	0.00773		.	FALSE
chr1	151966348	C	T	0.00511	S100A10	-	FALSE
chr1	52381354	G	T	0.00157	RAB3B	-	FALSE
chr1	40539210	C	A	0.00185	PPT1	-	FALSE
chr1	10517672	T	C	0.00257		.	FALSE	AluSx1	SINE,Alu
chr1	6582176	T	C	0.00893	NOL9	-	TRUE	AluSq4	SINE,Alu
chr3	42591956	G	A	0.00030	SEC22C	-	FALSE
chr3	44790781	T	C	0.00060	KIAA1143	-	TRUE	AluY	SINE,Alu
chr2	232574807	C	G	0.00134	PTMA	+	FALSE
chr2	37329300	T	C	0.00925		.	FALSE	AluJr4	SINE,Alu
chr15	41590932	A	G	0.00055	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr1	10519912	T	C	0.00613		.	FALSE	AluJr	SINE,Alu
chr8	117858600	T	A	0.00015	RAD21	-	FALSE
chr5	37291386	T	C	1.33550E-08		.	FALSE	AluSx3	SINE,Alu
chr1	150783968	T	A	0.00368	ARNT	-	FALSE
chr1	1595500	T	C	0.00845	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr1	20977221	A	T	0.00116	PINK1,PINK1-AS	+,-	FALSE
chr1	78414310	C	A	0.00067	FUBP1	-	FALSE
chr1	47844500	T	G	0.00596	CMPK1	+	FALSE
chr1	21100779	T	C	0.00086	HP1BP3	-	TRUE	AluJr	SINE,Alu
chr1	144606838	A	G	0.00025	NBPF20	+	FALSE
chr7	299843	G	A	6.16222E-05	FAM20C	+	FALSE
chr3	191116133	C	T	0.00032	CCDC50	+	FALSE
chr5	174956493	T	A	0.00466	SFXN1	+	FALSE
chr1	38174583	A	C	0.00644	CDCA8	+	FALSE
chr18	2763697	C	T	8.35636E-08	SMCHD1	+	FALSE
chr3	63996230	A	T	0.00309	PSMD6-AS2,PSMD6	+,-	FALSE
chr1	200941185	T	G	0.00729	KIF21B	-	FALSE
chr1	40537944	C	A	0.00506	CAP1	+	FALSE
chr2	55516941	C	T	0.00110	CCDC88A	-	FALSE
chr1	567557	A	G	0.00649		.	FALSE
chr1	144931101	G	A	0.00358	NBPF20,PDE4DIP	+,-	FALSE
chr10	71647223	A	C	0.00114	COL13A1	+	FALSE
chr5	56177848	T	A	0.00986	MAP3K1	+	FALSE
chr1	9324670	A	G	0.00734	H6PD	+	FALSE
chr6	13789450	T	C	0.00235	MCUR1	-	TRUE	AluSg	SINE,Alu
chr1	36789546	A	G	0.00562	EVA1B	-	FALSE	MIRb	SINE,Alu
chr1	8045340	C	A	0.00217	PARK7	+	FALSE
chr9	137330714	A	C	0.00030	RXRA	+	FALSE
chr1	52266242	G	A	0.00528	NRDC	-	FALSE
chr1	120539711	G	T	0.00627	NOTCH2	-	FALSE
chr8	25272364	C	G	0.00693	DOCK5	+	FALSE
chr2	152132130	A	G	6.12116E-05	NMI	-	FALSE
chr1	22419433	T	G	0.00156	CDC42	+	FALSE
chr9	131872852	G	C	0.00064	CRAT	-	FALSE
chr1	40537918	T	A	0.00773	CAP1	+	FALSE
chr2	128952015	A	G	0.00908	UGGT1	+	TRUE	AluSx1	SINE,Alu
chr9	125609939	A	T	0.00693		.	FALSE
chr1	45244411	C	A	0.00362	RPS8	+	FALSE
chr15	63111739	T	C	0.00914	TLN2	+	FALSE
chr1	179811337	C	A	0.00670	TOR1AIP2	-	FALSE	AluSp	SINE,Alu
chr6	36894338	A	G	0.00607	C6orf89	+	FALSE	GA-rich	SINE,Alu
chr5	118174735	T	C	0.00046	DTWD2	-	TRUE	AluY	SINE,Alu
chr10	61548856	T	C	0.00067	CCDC6	-	FALSE
chr3	195393406	C	T	0.00690	SDHAP2	+	FALSE
chr10	51613297	A	G	0.00347	TIMM23B,TIMM23	+,-	FALSE
chr1	77166017	G	A	0.00627		.	FALSE
chr12	51325280	A	G	0.00370	METTL7A	+	TRUE	AluSq2	SINE,Alu
chr1	28835847	A	G	5.60567E-05	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr2	176791250	T	C	0.00078	LNPK	-	TRUE	MSTD	SINE,Alu
chr2	37327677	T	C	0.00019		.	FALSE
chr3	15115284	G	A	0.00305	RBSN	-	FALSE
chr3	172115476	A	G	0.00892	FNDC3B	+	FALSE	(A)n	SINE,Alu
chr2	96850885	T	C	0.00699	STARD7	-	FALSE
chr3	149237753	G	A	2.17555E-05	WWTR1	-	FALSE	AluSq2	SINE,Alu
chr13	110407598	A	G	0.00222	IRS2	-	FALSE
chr1	10520819	T	C	0.00034	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	68624878	C	T	0.00465	GNG12-AS1,WLS	+,-	FALSE
chr11	94606941	T	C	0.00699	AMOTL1	+	FALSE
chr1	27202963	C	T	0.00106		.	FALSE	AluSq2	SINE,Alu
chr4	177252326	A	G	2.59441E-08	SPCS3	+	TRUE
chr2	61277775	A	G	0.00113	PEX13	+	TRUE	AluY	SINE,Alu
chr2	136542434	A	T	0.00606	UBXN4	+	FALSE	L1ME4b	SINE,Alu
chr2	71411975	A	C	0.00463	PAIP2B	-	FALSE
chr7	152551581	T	A	0.00313	ACTR3B	+	FALSE
chr1	110950295	C	A	0.00359	LAMTOR5	-	FALSE
chr2	9629305	A	T	0.00591	ADAM17	-	FALSE
chr1	33149399	A	G	0.00308	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr2	105963597	C	T	0.00898	C2orf49	+	FALSE
chr1	1361641	C	T	0.00928	TMEM88B	+	FALSE
chr14	23441535	A	T	0.00879	AJUBA	-	FALSE	GA-rich	SINE,Alu
chr1	10520532	T	C	0.00013		.	FALSE	AluSx1	SINE,Alu
chr1	67874689	T	C	3.52759E-06	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	6282318	T	C	0.00418	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	204524866	A	G	0.00369	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	230974329	A	G	0.00355	C1orf198	-	FALSE
chr4	2940147	T	C	0.00036	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	53289547	A	G	0.00505	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr1	20977907	A	G	3.34679E-05	PINK1,PINK1-AS	+,-	FALSE
chr1	153700841	A	G	0.00508	INTS3	+	FALSE
chr9	136897584	C	A	0.00060	BRD3	-	FALSE	A-rich	SINE,Alu
chr1	169768080	C	A	5.53708E-05	C1orf112	+	FALSE
chr1	148556726	G	T	0.00976		.	FALSE
chr1	10042988	A	G	3.32241E-06	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr1	36068231	T	C	0.00935	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	162497663	G	A	0.00365	UHMK1	+	FALSE
chr19	11560461	A	G	0.00034	PRKCSH	+	TRUE	AluSx	SINE,Alu

RBP	BRCA1
Knock-Method	siRNA
RBP Family	Non-canonical_RBP
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR205BWT
Platform	HiSeq
Pubmed ID	32252787

BRCA1 - Target Gene Network