RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr3	15114492	T	C	0.00073	RBSN	-	TRUE	AluY	SINE,Alu
chr1	193054154	G	A	0.00757	TROVE2	+	FALSE
chr1	154128837	G	T	0.00032	TPM3	-	FALSE
chr1	145376020	G	A	0.00478	NBPF20,NBPF10	+	FALSE
chr2	217366499	A	G	0.00183		.	FALSE	AluSz	SINE,Alu
chr1	181026558	G	A	0.00217	MR1	+	FALSE
chr1	26143698	T	A	0.00832	SEPN1	+	FALSE
chr2	86252222	T	C	0.00468	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr1	10517998	T	C	0.00821		.	FALSE	AluJr	SINE,Alu
chr1	15993603	G	A	0.00103		.	FALSE	AluSx4	SINE,Alu
chr2	37431681	A	G	0.00436	CEBPZOS,CEBPZ	+,-	FALSE	AluSc	SINE,Alu
chr1	179042512	A	G	4.06106E-05	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr14	75202704	A	G	2.33511E-06	FCF1	+	TRUE	AluSc	SINE,Alu
chr15	91044377	T	C	0.00440	IQGAP1	+	FALSE
chr2	214182561	C	T	0.00703	SPAG16	+	FALSE	L1MC1	SINE,Alu
chr14	75202857	A	G	2.23354E-05	FCF1	+	TRUE	AluSx	SINE,Alu
chr4	128958127	A	G	0.00556	ABHD18	+	TRUE	AluSx3	SINE,Alu
chr2	128620438	C	A	0.00230	AMMECR1L	-	FALSE
chr1	146495576	G	C	0.00107	LOC728989	-	FALSE
chr2	36704034	A	G	9.89157E-05	CRIM1	+	FALSE
chr1	9331255	A	G	0.00992	H6PD	+	TRUE	AluSx	SINE,Alu
chr1	217602945	G	A	0.00116	GPATCH2	-	FALSE	AluSx1	SINE,Alu
chr2	109374952	A	G	0.00031	RANBP2	+	FALSE
chr1	93603196	G	A	0.00627	MTF2	+	FALSE
chr12	76423035	A	G	0.00025	PHLDA1	-	FALSE
chr1	9328120	A	G	4.35354E-06	H6PD	+	TRUE	AluJr	SINE,Alu
chr1	31732677	G	A	0.00353	SNRNP40	-	FALSE	A-rich	SINE,Alu
chr2	7182946	T	C	0.00748	RNF144A	+	FALSE
chr5	128430757	T	C	0.00338	ISOC1	+	FALSE
chr1	16112795	A	G	0.00145	FBLIM1	+	FALSE
chr5	70503889	C	A	0.00131		.	FALSE
chr1	21766776	G	C	0.00343	NBPF3	+	FALSE
chr4	13601337	G	A	7.28365E-09	BOD1L1	-	FALSE
chr5	40832553	A	T	9.00390E-07	RPL37	-	FALSE
chr1	91990450	A	T	0.00405	CDC7	+	FALSE	LFSINE_Vert	SINE,Alu
chr2	64069566	A	G	0.00075	UGP2	+	FALSE
chr17	65334758	T	C	1.31160E-05	PSMD12	-	TRUE	AluSq	SINE,Alu
chr1	16889866	G	A	0.00051	NBPF1	-	FALSE
chr12	124146100	A	G	4.66106E-08	GTF2H3	+	TRUE	AluSx4	SINE,Alu
chr1	40147856	T	C	0.00205	HPCAL4	-	TRUE
chr1	51820588	G	A	0.00807	EPS15	-	FALSE
chr3	10193797	A	G	0.00261	VHL	+	TRUE	AluSx	SINE,Alu
chr5	115166486	T	C	0.00122	ATG12	-	TRUE	AluJr	SINE,Alu
chrX	2824979	T	C	0.00049	ARSD	-	TRUE	AluSx1	SINE,Alu
chr7	44842429	T	G	0.00384	PPIA	+	FALSE
chrM	2619	A	T	0.00012	RNR2	+	FALSE	LSU-rRNA_Hsa	SINE,Alu
chrX	2825114	T	C	0.00738	ARSD	-	TRUE	AluSx1	SINE,Alu
chr1	33149375	A	G	0.00148	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	114306374	G	A	0.00017	RSBN1	-	FALSE
chr1	16928622	C	A	0.00197	NBPF1	-	FALSE
chr4	187647832	C	G	0.00592		.	FALSE
chr1	70904800	G	T	0.00020	CTH	+	FALSE
chr1	10517314	T	C	0.00802		.	FALSE	AluJr	SINE,Alu
chr16	2821024	C	T	0.00406	SRRM2	+	FALSE
chr2	102793246	A	G	0.00904	IL1R1	+	FALSE
chr1	10517672	T	C	0.00257		.	FALSE	AluSx1	SINE,Alu
chr17	4929004	A	G	0.00030	KIF1C	+	TRUE	AluY	SINE,Alu
chr2	72403405	A	C	0.00227	EXOC6B	-	FALSE	GA-rich	SINE,Alu
chr1	10003320	G	A	0.00168	LZIC,NMNAT1	+,-	FALSE
chr4	88060832	T	C	0.00531	AFF1	+	FALSE
chr2	37429733	A	G	0.00381	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr1	10521238	T	C	0.00232	DFFA	-	TRUE	AluY	SINE,Alu
chr1	150446056	G	A	0.00945	RPRD2	+	FALSE	(A)n	SINE,Alu
chr1	20976174	T	C	0.00103	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr4	89181456	T	C	0.00024	PPM1K	-	TRUE	AluSx1	SINE,Alu
chr2	174773510	T	A	0.00775	SP3	-	FALSE	A-rich	SINE,Alu
chr6	42048297	A	G	0.00307	TAF8	+	TRUE	AluSq2	SINE,Alu
chr1	67874731	T	C	0.00125	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr2	217366444	A	G	2.40359E-05		.	FALSE
chr1	85786957	T	G	0.00959	DDAH1	-	FALSE
chr2	61277835	A	G	0.00105	PEX13	+	TRUE	AluY	SINE,Alu
chr1	144598755	G	A	0.00743	NBPF20	+	FALSE
chr5	93018903	T	A	5.97109E-08	FAM172A	-	FALSE	(TCA)n	SINE,Alu
chr3	10005392	T	C	8.76084E-06	EMC3	-	FALSE	AluSg7	SINE,Alu
chr1	35647099	A	G	0.00092	SFPQ	-	FALSE
chr1	155161702	G	C	0.00020	MUC1	-	FALSE
chr5	72801321	T	A	0.00427	BTF3	+	FALSE
chr2	20401854	A	T	2.80783E-05	SDC1	-	FALSE
chr1	31344952	C	T	0.00842	SDC3	-	FALSE
chr1	11347152	A	T	0.00295	UBIAD1	+	FALSE
chr2	210885022	C	T	0.00325	RPE	+	FALSE
chr3	196557274	C	T	0.00285	PAK2	+	FALSE
chr1	21904374	A	C	0.00198	ALPL	+	FALSE
chr1	114306374	G	A	5.13313E-06	RSBN1	-	FALSE
chr1	201438097	G	C	2.75480E-05	PHLDA3	-	FALSE
chr3	88104158	T	A	0.00971	CGGBP1	-	FALSE
chr16	88785189	T	C	0.00636	PIEZO1	-	TRUE	AluJr	SINE,Alu
chr1	204374665	G	A	0.00717	PPP1R15B	-	FALSE
chr9	100777799	G	A	0.00675	ANP32B	+	FALSE
chr3	47628810	T	A	0.00934	SMARCC1	-	FALSE
chr12	125512541	A	G	6.52088E-06		.	FALSE
chr6	160100931	T	C	0.00215	SOD2	-	TRUE	AluSz	SINE,Alu
chr6	42849616	A	G	0.00092	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	36068237	T	C	0.00974	PSMB2	-	TRUE	AluSc	SINE,Alu
chr4	10442610	T	C	0.00174	ZNF518B	-	FALSE
chr1	27204865	T	C	0.00132		.	FALSE	AluSx	SINE,Alu
chr3	196670092	C	G	0.00393	NCBP2-AS2	+	FALSE
chr8	95805038	A	G	1.06873E-05	DPY19L4	+	TRUE	AluYf1	SINE,Alu
chrX	123046757	A	G	0.00535	XIAP	+	TRUE	AluSz	SINE,Alu
chr3	50296329	G	A	0.00884	GNAI2	+	FALSE
chr1	82453022	A	G	0.00532	ADGRL2	+	FALSE
chr6	29910581	C	A	6.62336E-05		.	FALSE
chr4	17629434	A	G	0.00661		.	FALSE	AluSx3	SINE,Alu
chr1	114938105	T	A	0.00430	TRIM33	-	FALSE
chr1	36067811	T	C	0.00439	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	28218100	T	C	0.00080	RPA2	-	FALSE
chr1	899810	G	A	2.29962E-09	KLHL17	+	FALSE
chr1	20978324	T	G	0.00153	PINK1-AS,DDOST	-	FALSE	AluY	SINE,Alu
chr16	68962	C	T	0.00852		.	FALSE
chr1	23636031	T	A	0.00965	HNRNPR	-	FALSE
chr3	183209052	T	C	0.00041	KLHL6	-	TRUE	AluSq	SINE,Alu
chr3	156259331	T	C	0.00088	SSR3	-	TRUE	AluSq2	SINE,Alu
chrX	77083614	T	C	6.82446E-05	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr1	120497841	T	C	0.00673	NOTCH2	-	FALSE
chr1	32799510	T	G	0.00048	MARCKSL1	-	FALSE
chr16	31469051	T	C	0.00278		.	FALSE	AluSz	SINE,Alu
chr5	130537761	A	G	0.00947	LYRM7	+	FALSE	AluJb	SINE,Alu
chr4	113346996	G	A	0.00191	ALPK1	+	FALSE
chr1	31532379	A	G	0.00061	PUM1	-	FALSE
chr1	58971831	G	A	0.00801	OMA1	-	FALSE
chr2	128601464	T	C	0.00161		.	FALSE	AluJr	SINE,Alu
chr1	120612154	C	G	0.00803	NOTCH2	-	FALSE
chr1	206566195	C	T	0.00334	SRGAP2	+	FALSE
chr19	21302035	A	G	5.57890E-05	ZNF714	+	TRUE	AluSg4	SINE,Alu
chr12	56510707	G	A	0.00056	RPL41	+	FALSE
chr12	27848051	C	A	0.00245	PPFIBP1	+	FALSE
chr22	33257373	G	A	0.00581	SYN3,TIMP3	+,-	FALSE
chr1	154989595	T	C	0.00264	ZBTB7B	+	FALSE
chr3	42592874	T	C	9.28376E-05	SEC22C	-	FALSE	AluJr	SINE,Alu
chr3	39137793	C	T	0.00363	WDR48	+	FALSE
chr19	53155674	T	C	1.27993E-05	ZNF83	-	TRUE	AluSg	SINE,Alu
chr6	96054540	G	T	0.00358	MANEA	+	FALSE
chr1	3729587	A	G	0.00580	CEP104	-	FALSE	(AT)n	SINE,Alu
chr2	37331841	C	T	0.00179		.	FALSE	L1MC4	SINE,Alu
chr2	17836722	T	A	0.00816	VSNL1	+	FALSE
chr1	205056301	A	G	0.00506	RBBP5	-	FALSE
chr1	20238573	T	C	0.00204	OTUD3	+	FALSE
chr1	45976147	G	A	0.00476	MMACHC	+	FALSE	AluJr	SINE,Alu
chr1	100654789	T	C	0.00014	DBT	-	TRUE	AluSz	SINE,Alu
chr1	145509493	A	G	0.00264	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr2	206983491	T	C	0.00505		.	FALSE	AluSx	SINE,Alu
chr1	160966376	T	C	0.00996	F11R	-	TRUE	AluSg	SINE,Alu
chr3	63996262	C	T	0.00681	PSMD6-AS2,PSMD6	+,-	FALSE
chr1	93827995	C	T	0.00714	DR1	+	FALSE
chr10	75008797	T	C	0.00824	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr1	101443701	A	G	0.00406	SLC30A7	+	FALSE
chr1	179012947	C	G	0.00501	FAM20B	+	FALSE
chr1	67874540	T	C	0.00555	SERBP1	-	FALSE
chr15	90820095	A	G	6.27827E-07		.	FALSE	AluY	SINE,Alu
chr2	151326173	A	C	0.00143	RND3	-	FALSE
chr2	20192696	G	A	0.00400	MATN3,LOC101928222	+,-	FALSE
chr1	148251079	T	C	0.00880	NBPF8,NBPF14,NBPF9	-	FALSE	L1MC4	SINE,Alu
chr1	160966299	T	C	0.00033	F11R	-	TRUE	AluSg	SINE,Alu
chrX	123047295	A	G	9.23037E-05	XIAP	+	FALSE	AluSx	SINE,Alu
chr1	94995585	G	A	0.00266	F3	-	FALSE	AluSx	SINE,Alu
chr1	6583097	T	C	0.00022	NOL9	-	TRUE	AluSx4	SINE,Alu
chr6	52860743	T	G	1.89710E-05		.	FALSE	7SK	SINE,Alu
chr3	179117128	T	C	0.00276	GNB4	-	TRUE	AluSz	SINE,Alu
chr1	154128839	G	T	0.00579	TPM3	-	FALSE
chr2	220370192	C	T	0.00055	GMPPA	+	FALSE
chr3	194124421	A	G	0.00024	ATP13A3	-	FALSE
chr2	217366590	A	G	0.00013		.	FALSE	AluSz	SINE,Alu
chr1	204526727	A	G	0.00033	MDM4	+	TRUE	AluSx	SINE,Alu
chr5	125962086	A	G	0.00231	PHAX	+	TRUE	AluSz	SINE,Alu
chr14	103372465	C	A	0.00600	TRAF3	+	FALSE	(AC)n	SINE,Alu
chr1	6583592	T	C	0.00012	NOL9	-	TRUE	AluSq	SINE,Alu
chr2	203741032	T	C	0.00282		.	FALSE	AluJr	SINE,Alu
chr1	26755643	A	G	0.00955	LIN28A	+	FALSE	AluSc	SINE,Alu
chr7	115898442	G	C	2.36867E-05	TES	+	FALSE	AluSx	SINE,Alu
chr2	238484068	T	C	0.00047	RAB17	-	FALSE
chr1	1252468	T	C	0.00096	CPSF3L	-	TRUE	AluJr	SINE,Alu
chr1	44423703	C	T	1.21014E-14	IPO13	+	FALSE
chr2	55459820	C	T	0.00714	RPS27A	+	FALSE
chr21	46935076	T	G	0.00164	SLC19A1	-	FALSE
chr5	179041779	C	T	0.00430	HNRNPH1	-	FALSE
chr1	6282324	T	C	0.00142	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	145689025	A	G	0.00541	NBPF20,NBPF10	+	TRUE	AluSc8	SINE,Alu
chr8	27661036	C	A	0.00339	ESCO2	+	FALSE	A-rich	SINE,Alu
chr19	53571306	T	C	0.00481	ZNF160	-	FALSE
chr5	118174733	T	C	0.00037	DTWD2	-	TRUE	AluY	SINE,Alu
chr3	86994021	T	C	0.00705	VGLL3	-	FALSE
chr1	54637167	T	C	0.00027		.	FALSE
chr1	16945452	C	T	0.00184	CROCCP2	-	FALSE
chr5	58267557	C	T	0.00420	PDE4D	-	FALSE
chr1	31905889	A	G	0.00565	SERINC2	+	FALSE
chr1	100654813	T	C	0.00352	DBT	-	TRUE	AluSz	SINE,Alu
chr1	10520532	T	C	0.00150		.	FALSE	AluSx1	SINE,Alu
chr1	45504720	G	C	0.00759	ZSWIM5	-	FALSE
chr1	226923938	A	C	0.00160	ITPKB	-	FALSE
chr10	62554474	T	G	6.65730E-05	CDK1	+	FALSE
chr1	32158374	T	C	0.00134	COL16A1	-	FALSE
chr1	160967843	T	C	0.00247	F11R	-	TRUE	AluSp	SINE,Alu
chr17	74560728	A	G	0.00510	SNHG16	+	FALSE	THE1B	SINE,Alu
chr1	10517958	G	A	0.00149		.	FALSE
chr18	2803231	A	T	0.00638	SMCHD1	+	FALSE
chr2	204294497	C	T	0.00203	ABI2	+	FALSE
chr1	44463185	T	G	0.00397	SLC6A9	-	FALSE
chr12	54634284	T	C	0.00247	CBX5	-	TRUE	AluJr	SINE,Alu
chr1	45975673	A	G	0.00242	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr12	125512534	A	G	0.00024		.	FALSE
chr4	73922978	T	C	0.00079	COX18	-	TRUE	AluSz	SINE,Alu
chr4	17804879	T	C	0.00863	DCAF16	-	TRUE	AluSx	SINE,Alu
chr2	37328087	T	C	0.00335		.	FALSE
chr1	145369589	T	C	0.00696	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr3	62189314	C	T	0.00018	PTPRG	+	FALSE
chr7	44841646	A	C	0.00316	PPIA	+	FALSE	AluJr	SINE,Alu
chr15	42192345	T	C	0.00039	EHD4	-	TRUE
chr11	94863483	C	T	0.00501	ENDOD1	+	FALSE
chr8	48889823	C	A	0.00770	MCM4	+	FALSE	AluSx3	SINE,Alu
chr5	31554465	A	T	1.69098E-06	C5orf22	+	FALSE
chr2	37331560	T	C	0.00040		.	FALSE	AluJb	SINE,Alu
chr6	150045852	T	C	0.00204	NUP43	-	TRUE	AluSq	SINE,Alu
chr1	95123291	G	C	0.00040	LINC01057	-	FALSE	LTR7Y	SINE,Alu
chr6	32148031	A	G	1.10299E-06		.	FALSE
chr1	45671434	G	C	0.00819	ZSWIM5	-	FALSE
chr1	145281656	A	T	0.00839	NBPF20,NOTCH2NL	+	FALSE
chr19	13883548	A	G	0.00566	MRI1	+	TRUE	AluYk3	SINE,Alu
chr1	116947396	A	G	0.00226	ATP1A1,ATP1A1-AS1	+,-	FALSE
chr2	164466037	A	T	0.00090	FIGN	-	FALSE
chr1	35817025	T	A	0.00987	ZMYM4	+	FALSE
chr1	31732603	A	C	0.00148	SNRNP40	-	FALSE
chr1	184762627	T	C	0.00519	FAM129A	-	TRUE	AluSz	SINE,Alu
chr2	206984202	T	C	0.00849		.	FALSE	AluSx	SINE,Alu
chr1	214525603	A	G	0.00047	PTPN14	-	FALSE
chr9	132268942	A	G	0.00104	LINC00963	+	TRUE	AluYf1	SINE,Alu
chr7	128142833	A	G	6.82570E-05	METTL2B	+	TRUE	AluSx1	SINE,Alu
chr15	43698008	C	T	0.00175	TUBGCP4	+	FALSE	AluSp	SINE,Alu
chr1	179042687	A	G	0.00782	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr4	56291751	A	C	0.00291	TMEM165	+	FALSE
chr1	1152631	C	A	0.00517	SDF4	-	FALSE
chr12	100562935	G	T	0.00074	GOLGA2P5	-	FALSE	AluSg	SINE,Alu
chr1	54692341	T	C	0.00045	SSBP3	-	FALSE	(T)n	SINE,Alu
chr13	30780287	C	T	0.00748	KATNAL1	-	FALSE	AluSx1	SINE,Alu
chr2	101623533	C	T	0.00784	RPL31	+	FALSE
chr3	179115635	T	C	0.00453	GNB4	-	TRUE	AluSg7	SINE,Alu
chr1	94352570	G	T	0.00097	GCLM	-	FALSE	AluSx1	SINE,Alu

RBP	HNRNPK
Knock-Method	shRNA
RBP Family	KH_1
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR853ZJS
Platform	HiSeq
Pubmed ID	32252787

HNRNPK - Target Gene Network