RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr3	10192617	A	G	2.94246E-06	VHL	+	TRUE	AluSx1	SINE,Alu
chr17	73940094	T	C	0.00557	ACOX1	-	TRUE	AluJb	SINE,Alu
chr5	73932315	T	C	0.00420	ENC1	-	FALSE
chr1	28826085	A	G	0.00153	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	16576295	G	A	0.00139	FBXO42	-	FALSE	A-rich	SINE,Alu
chr5	114951140	T	G	0.00761	TMED7-TICAM2,LOC101927100,TMED7	+,-	FALSE
chr4	2940438	T	C	0.00151	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	10517691	T	C	9.61087E-05		.	FALSE	AluSx1	SINE,Alu
chr2	54887287	C	T	7.50624E-05	SPTBN1	+	FALSE
chr8	100890376	G	T	0.00920	COX6C	-	FALSE
chr1	68624878	C	T	0.00465	GNG12-AS1,WLS	+,-	FALSE
chr1	76252687	T	C	0.00021	RABGGTB	+	FALSE
chr2	37331565	T	C	0.00121		.	FALSE	AluJb	SINE,Alu
chr2	101622700	A	G	0.00387	RPL31	+	FALSE
chr5	74072634	T	A	0.00187	NSA2	+	FALSE
chr1	20976032	T	C	0.00010	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr1	20811795	G	C	0.00047	CAMK2N1	-	FALSE
chr1	9326888	T	C	0.00887	H6PD	+	FALSE	AluSx1	SINE,Alu
chr1	28661656	A	G	0.00012	MED18	+	TRUE	AluSg	SINE,Alu
chr1	31732603	A	C	0.00164	SNRNP40	-	FALSE
chr1	16952481	A	G	5.15865E-05	CROCCP2	-	FALSE
chr14	70838268	T	C	0.00365	SYNJ2BP-COX16,SYNJ2BP	-	TRUE	AluSg	SINE,Alu
chr21	37789767	A	G	0.00236		.	FALSE	AluSx	SINE,Alu
chr1	241796948	T	C	0.00082	OPN3,CHML	-	FALSE
chr2	98388810	G	T	6.24900E-05	TMEM131	-	FALSE
chr3	176742501	G	A	0.00707	TBL1XR1	-	FALSE	(A)n	SINE,Alu
chr2	47703548	G	A	5.05442E-05	MSH2	+	FALSE
chr17	76626300	C	T	0.00097	LOC101928710	-	FALSE
chr1	19586294	A	G	0.00048	MRTO4	+	FALSE
chr1	204526554	A	G	0.00194	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	10517659	T	C	0.00012		.	FALSE	AluSx1	SINE,Alu
chr6	37142192	C	T	0.00850	PIM1	+	FALSE
chr2	206981835	T	C	0.00047		.	FALSE	AluJb	SINE,Alu
chr6	118029818	T	G	0.00119	NUS1	+	FALSE
chr5	52250837	C	T	0.00017		.	FALSE
chr1	44402565	G	A	0.00010	ARTN	+	FALSE
chr19	59095126	G	T	0.00303	CENPBD1P1	+	FALSE
chr7	65844062	T	A	0.00733	LINC00174	-	FALSE
chr16	58195430	G	C	0.00325	CSNK2A2	-	FALSE	(AC)n	SINE,Alu
chr19	19793709	A	G	0.00700	ZNF101	+	TRUE	AluSc8	SINE,Alu
chr5	110463621	G	T	0.00786	WDR36	+	FALSE	(T)n	SINE,Alu
chr2	27001973	C	T	0.00327	SLC35F6	+	FALSE	AluSx	SINE,Alu
chr3	66024384	G	C	0.00096	MAGI1	-	FALSE
chr1	182569318	G	T	0.00101	RGS16	-	FALSE
chr1	78483452	C	T	0.00739	DNAJB4	+	FALSE	L1MB7	SINE,Alu
chr1	79108421	A	T	7.77428E-05	IFI44L	+	FALSE
chr1	28662254	A	G	0.00290	MED18	+	TRUE	AluSq2	SINE,Alu
chr19	13883927	A	G	0.00143	MRI1	+	TRUE	AluSz	SINE,Alu
chr1	36770621	G	T	0.00424	THRAP3	+	FALSE	(T)n	SINE,Alu
chr1	20978024	C	A	0.00175	PINK1-AS	-	FALSE
chr2	55199563	G	T	0.00172	RTN4	-	FALSE
chr5	53841241	T	A	0.00372	SNX18	+	FALSE
chr3	184766301	T	C	0.00648	VPS8	+	FALSE
chr1	19810692	A	C	0.00069	CAPZB	-	FALSE
chr1	10520178	T	C	0.00112		.	FALSE	AluSx	SINE,Alu
chr1	118472382	G	T	0.00029	WDR3	+	FALSE
chr1	16112795	A	G	4.56234E-06	FBLIM1	+	FALSE
chr16	56510331	G	T	0.00181	OGFOD1	+	FALSE
chr1	201846632	C	T	7.46598E-05	IPO9	+	FALSE	(CA)n	SINE,Alu
chr1	100440553	A	G	0.00179	SLC35A3	+	TRUE	AluJb	SINE,Alu
chr12	56215099	T	A	0.00227	DNAJC14	-	FALSE
chr1	788795	T	G	0.00333	LINC01128	+	FALSE	Charlie19a	SINE,Alu
chr12	10311410	A	G	0.00909	OLR1	-	FALSE
chr1	111489899	C	A	0.00041	LRIF1	-	FALSE
chrX	24095065	G	T	0.00291	EIF2S3	+	FALSE
chr1	1595538	T	C	0.00586	CDK11B,SLC35E2B	-	FALSE	AluJr	SINE,Alu
chr17	55761035	G	A	0.00125	MSI2	+	FALSE
chr1	59142713	T	C	0.00078	MYSM1	-	FALSE
chr2	132481480	T	C	0.00989	C2orf27A	+	FALSE
chr1	222906426	T	C	0.00322	BROX	+	FALSE	AluSx	SINE,Alu
chr2	68402796	C	T	0.00656	PNO1	+	FALSE
chr1	71532815	G	A	0.00712	ZRANB2-AS1,ZRANB2	+,-	FALSE
chr6	42856118	A	G	0.00743	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr4	128758152	A	G	0.00198		.	FALSE	AluSx	SINE,Alu
chr5	37289087	T	C	4.02459E-05		.	FALSE	AluSp	SINE,Alu
chr10	102308801	G	C	0.00127	HIF1AN	+	FALSE	(GT)n	SINE,Alu
chr1	9643107	A	G	0.00859		.	FALSE	AluSx	SINE,Alu
chr7	4809333	A	G	0.00067	FOXK1	+	TRUE	AluSx1	SINE,Alu
chr3	48787640	T	C	0.00038	PRKAR2A	-	TRUE	AluSp	SINE,Alu
chr1	67451522	A	T	0.00883	MIER1	+	FALSE
chr1	19542310	T	C	0.00873	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr19	18306990	G	C	0.00090	MPV17L2	+	FALSE
chr1	9162423	T	C	0.00074		.	FALSE	AluSx	SINE,Alu
chr1	228334277	C	T	0.00256	GUK1	+	FALSE
chr1	28826085	A	G	0.00196	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr6	107113953	C	G	0.00300	QRSL1	+	FALSE	AluSg	SINE,Alu
chr2	118854108	A	T	0.00568	INSIG2	+	FALSE
chr7	100804430	C	T	0.00629	AP1S1	+	FALSE
chr5	149763305	A	G	0.00640	TCOF1	+	FALSE
chr2	74349080	A	G	0.00094		.	FALSE	AluSz	SINE,Alu
chr1	10519888	T	C	0.00986		.	FALSE	AluJr	SINE,Alu
chr3	128339057	A	T	0.00535	RPN1	-	FALSE	(A)n	SINE,Alu
chr1	28150601	A	T	0.00558	STX12	+	FALSE
chr1	22445725	C	G	0.00913	WNT4	-	FALSE
chr5	140594470	G	A	0.00041	PCDHB13	+	FALSE
chr12	7045885	A	C	0.00473	ATN1	+	FALSE	(CAG)n	SINE,Alu
chr1	145281633	C	A	0.00022	NBPF20,NOTCH2NL	+	FALSE
chr1	16910172	G	A	0.00023	NBPF1	-	FALSE
chr1	9160982	T	C	0.00695		.	FALSE	AluJb	SINE,Alu
chr1	40307166	G	A	0.00026	TRIT1	-	FALSE
chr5	102345546	A	C	0.00463	PAM	+	FALSE
chr1	16889423	G	C	6.70783E-10	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr1	52520867	T	A	0.00206	TXNDC12	-	FALSE
chr1	145283980	C	T	0.00113	NBPF20,NOTCH2NL	+	FALSE
chr1	120611964	G	C	0.00077	NOTCH2	-	FALSE
chr1	16958064	A	G	0.00240		.	FALSE
chr1	53708528	T	C	0.00057	LRP8	-	FALSE	(TA)n	SINE,Alu
chr5	70248476	T	G	0.00273	SMN1,SMN2	+	FALSE	L1MC5a	SINE,Alu
chr2	27293350	A	T	0.00314	AGBL5,OST4	+,-	FALSE
chr1	7737791	A	C	0.00017	CAMTA1	+	FALSE
chr1	9788153	G	A	0.00198	PIK3CD	+	FALSE	AluSx	SINE,Alu
chr1	145369709	A	G	0.00607	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr3	172117457	C	A	0.00037	FNDC3B	+	FALSE
chr1	38327586	C	T	0.00198	INPP5B	-	FALSE	AluSx3	SINE,Alu
chr1	201846630	C	A	0.00212	IPO9	+	FALSE	(CA)n	SINE,Alu
chr13	24823699	G	A	0.00472	SPATA13	+	FALSE
chr3	12624763	T	C	1.62214E-06	MKRN2	+	FALSE
chr1	6283264	T	C	0.00479	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	110173775	G	T	0.00015	AMPD2	+	FALSE
chr1	1252749	T	C	0.00875	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr2	217366821	A	G	0.00510		.	FALSE	AluSz6	SINE,Alu
chr1	100550370	T	A	0.00743	SASS6	-	FALSE
chr1	6283430	T	C	0.00751	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	32697085	T	C	0.00366	EIF3I	+	FALSE	AluSp	SINE,Alu
chr1	87811103	T	G	0.00028	LMO4	+	FALSE
chr1	53290298	A	G	0.00258	ZYG11B	+	TRUE	AluSg4	SINE,Alu
chr2	24225013	A	G	0.00103		.	FALSE	AluSx	SINE,Alu
chr2	27170943	A	C	0.00684	DPYSL5	+	FALSE	(CA)n	SINE,Alu
chr16	10625108	T	C	7.88488E-10	EMP2	-	TRUE	AluSx3	SINE,Alu
chr2	37327666	T	C	3.66834E-09		.	FALSE
chr11	45827050	G	C	0.00045	SLC35C1	+	FALSE
chr4	144442611	T	C	0.00899	SMARCA5	+	FALSE
chr1	10520258	T	C	0.00746		.	FALSE	AluSx	SINE,Alu
chr1	181026558	G	A	0.00217	MR1	+	FALSE
chr1	53288870	A	G	0.00122	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr1	36067817	T	C	0.00938	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	6282324	T	C	0.00013	ICMT	-	TRUE	AluSz	SINE,Alu
chr3	49051841	C	A	0.00132	WDR6	+	FALSE
chr17	73885274	T	C	0.00143	TRIM65	-	TRUE	AluSg	SINE,Alu
chr1	16909129	T	C	0.00131	NBPF1	-	FALSE
chr16	81064534	A	G	0.00480	CENPN	+	TRUE	AluSg	SINE,Alu
chr1	36024788	C	T	2.88658E-15	NCDN	+	FALSE
chr4	39552066	T	C	0.00370	UGDH-AS1,SMIM14	+,-	FALSE	AluSx	SINE,Alu
chr1	988503	A	T	8.91206E-06	AGRN	+	FALSE
chr1	169799880	G	T	0.00118	C1orf112	+	FALSE
chr3	5026730	T	C	0.00488	BHLHE40	+	FALSE
chr1	144599819	C	T	0.00682	NBPF20	+	FALSE
chr3	86993604	G	T	0.00195	VGLL3	-	FALSE	AluJo	SINE,Alu
chr1	19543459	T	C	0.00540	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	210006603	C	T	0.00829	DIEXF	+	FALSE
chr9	115447528	T	C	0.00112	INIP	-	TRUE	AluJb	SINE,Alu
chr1	179044181	A	G	0.00660	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	223967953	C	T	0.00341	TP53BP2	-	FALSE
chr5	34906547	T	C	0.00051	RAD1	-	TRUE	AluJo	SINE,Alu
chr1	899810	G	A	3.12519E-10	KLHL17	+	FALSE
chr3	16301791	G	A	4.37274E-05	DPH3	-	FALSE
chr12	92537702	T	A	0.00368	BTG1	-	FALSE
chrX	118672600	T	C	0.00080	CXorf56	-	TRUE	AluSx	SINE,Alu
chr3	125248855	C	A	0.00071	OSBPL11	-	FALSE
chr1	144828784	A	G	0.00053	NBPF20,NBPF9	+	FALSE
chr2	206987629	T	C	0.00208		.	FALSE	AluJb	SINE,Alu
chr1	148252049	A	C	0.00493	NBPF8,NBPF14,NBPF9	-	FALSE
chr1	33149496	A	G	0.00504	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr7	129963777	T	G	0.00874	CPA4	+	FALSE	(TG)n	SINE,Alu
chr17	65335430	T	C	0.00019	PSMD12	-	TRUE	AluSx	SINE,Alu
chr6	42856954	A	G	0.00037	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr1	180854783	T	C	0.00292	XPR1	+	FALSE
chr1	10520383	T	C	0.00401		.	FALSE	AluSx1	SINE,Alu
chr1	46077345	A	G	0.00024	NASP	+	TRUE	AluSc8	SINE,Alu
chr11	94801632	C	A	0.00194	SRSF8	+	FALSE
chr2	1637648	T	C	9.03854E-11	PXDN	-	FALSE
chr1	16928737	C	T	0.00796	NBPF1	-	FALSE	ERVL-E-int	SINE,Alu
chr1	6283306	T	C	0.00558	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	1595586	T	C	0.00096	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr2	238244963	A	G	0.00124	COL6A3	-	FALSE
chrX	77083614	T	C	6.82446E-05	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr1	2115914	G	T	0.00970	PRKCZ,FAAP20	+,-	FALSE
chr2	36777209	T	C	0.00299	CRIM1	+	FALSE	(TG)n	SINE,Alu
chr1	148251814	T	A	0.00353	NBPF8,NBPF14,NBPF9	-	FALSE
chr1	89447720	G	A	0.00029	KYAT3,RBMXL1	-	FALSE
chr1	16929327	C	T	5.08143E-05	NBPF1	-	FALSE	ERVL-E-int	SINE,Alu
chr10	121437033	T	G	0.00357	BAG3	+	FALSE
chr1	20975992	T	C	2.78350E-06	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr1	145512081	A	G	0.00579	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr3	122447574	A	C	0.00224	PARP14	+	FALSE
chr1	33322929	T	G	0.00340	S100PBP	+	FALSE	AluSp	SINE,Alu
chr15	102516512	G	A	0.00041	WASH3P	+	FALSE
chr1	145509570	A	G	0.00306	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr4	7762313	C	G	5.86540E-10	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	155106550	A	G	0.00015	EFNA1	+	FALSE
chr12	100452832	C	T	0.00386	UHRF1BP1L	-	FALSE
chr2	206987597	T	C	0.00085		.	FALSE	AluJb	SINE,Alu
chr4	36121337	T	A	0.00065	ARAP2	-	FALSE
chr1	10520888	C	T	0.00958	DFFA	-	FALSE
chr3	14528004	T	C	0.00091	SLC6A6	+	FALSE
chr9	96438974	C	G	0.00083	PHF2	+	FALSE	(CTCCAC)n	SINE,Alu
chr12	53435627	A	G	0.00133	EIF4B	+	FALSE
chr14	74526984	T	C	0.00496	BBOF1,ALDH6A1	+,-	FALSE	AluJo	SINE,Alu
chr19	57816261	A	G	0.00156		.	FALSE	AluY	SINE,Alu
chr7	65992665	T	C	2.17687E-05		.	FALSE	AluJr	SINE,Alu
chr4	17802772	G	T	0.00328	DCAF16	-	FALSE	AluSz	SINE,Alu
chr16	15198598	C	T	0.00494	PDXDC1,PKD1P6-NPIPP1,LOC100505915	+,-	FALSE
chr3	172365720	C	T	3.67728E-06	NCEH1	-	FALSE
chr12	56510707	G	A	0.00056	RPL41	+	FALSE
chr1	16890644	C	T	0.00174	NBPF1	-	FALSE
chr1	40537944	C	A	0.00076	CAP1	+	FALSE
chr5	77745847	C	T	0.00926	SCAMP1	+	FALSE
chr5	256514	G	C	0.00198	SDHA	+	FALSE
chr2	202032184	A	G	0.00954	CFLAR	+	FALSE	AluJo	SINE,Alu
chr4	128757345	A	G	0.00040		.	FALSE	AluY	SINE,Alu
chr1	36770950	A	G	0.00118	THRAP3	+	FALSE
chr1	6283264	T	C	0.00521	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	204524840	A	G	0.00557	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	8045340	C	A	0.00056	PARK7	+	FALSE
chr1	120162587	G	A	0.00730	ZNF697	-	FALSE
chr10	75008965	T	C	0.00017	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr22	42908563	C	T	0.00492	SERHL,RRP7A	+,-	FALSE
chr1	10042911	A	G	0.00043	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr1	45976723	T	C	0.00340	MMACHC,PRDX1	+,-	FALSE
chr1	114940216	T	G	0.00674	TRIM33	-	FALSE	(T)n	SINE,Alu
chr12	133298095	A	G	0.00081	PGAM5	+	TRUE	AluJo	SINE,Alu
chr1	11979815	A	C	0.00072	KIAA2013	-	FALSE
chr5	157184013	A	G	0.00631	LSM11	+	TRUE	AluY	SINE,Alu
chr3	48894565	T	A	0.00142	SLC25A20	-	FALSE
chr9	131457814	G	A	0.00021	SET	+	FALSE
chr1	156005447	C	A	0.00337	UBQLN4	-	FALSE
chr3	10191943	G	A	2.29886E-07	VHL	+	FALSE
chr1	31905889	A	G	0.00565	SERINC2	+	FALSE
chr22	31375015	A	T	0.00990	TUG1	+	FALSE
chr1	327538	A	G	0.00010		.	FALSE
chr12	98942805	A	G	0.00058	TMPO	+	TRUE	AluSc	SINE,Alu
chr3	52581295	G	A	1.21436E-06	PBRM1	-	FALSE
chr7	129472335	T	C	0.00420	UBE2H	-	FALSE	(CA)n	SINE,Alu
chr1	19578192	G	A	0.00246	MRTO4	+	FALSE
chr1	202861470	C	A	0.00441	KLHL12	-	FALSE
chr2	44459528	G	A	0.00100	PPM1B	+	FALSE
chr2	232028396	A	G	0.00701	PSMD1	+	FALSE
chr6	114181220	A	G	0.00265	MARCKS	+	FALSE
chr3	73115126	A	T	0.00228	PPP4R2	+	FALSE
chr3	42592902	T	C	0.00934	SEC22C	-	FALSE	AluJr	SINE,Alu
chr1	16927391	T	C	0.00110	NBPF1	-	FALSE
chr1	26608009	T	A	0.00496	SH3BGRL3	+	FALSE
chr3	66430374	A	T	0.00275	LRIG1	-	FALSE
chr1	153720690	G	A	0.00550	INTS3	+	FALSE
chr1	94930345	G	A	1.57139E-05	ABCD3	+	FALSE
chr1	145369550	A	G	0.00031	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr1	155106227	A	T	0.00214	EFNA1	+	FALSE
chr1	24289896	T	G	0.00051	PNRC2	+	FALSE
chr1	145512944	A	G	0.00110	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	9160989	T	C	0.00183		.	FALSE	AluJb	SINE,Alu
chr7	35737649	G	A	0.00566	LOC101930085	+	FALSE	AluSz	SINE,Alu
chr2	3592615	T	C	0.00331	RNASEH1	-	TRUE	AluSz6	SINE,Alu
chr3	182614493	T	C	0.00195	ATP11B	+	FALSE
chr2	200792307	G	A	0.00596	C2orf69	+	FALSE
chr1	235492546	T	G	0.00786	GGPS1	+	FALSE

RBP	AKAP8L
Knock-Method	shRNA
RBP Family	AKAP95
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR807ODB
Platform	HiSeq
Pubmed ID	32252787

AKAP8L - Target Gene Network