RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr2	101623611	A	C	0.00826	RPL31	+	FALSE
chr19	39874945	T	C	0.00335	SAMD4B	+	FALSE
chr3	196659892	T	G	0.00620	SENP5	+	FALSE	AluSz	SINE,Alu
chr1	209605646	A	C	0.00478	MIR205HG	+	FALSE	(AGC)n	SINE,Alu
chr3	195635455	T	C	0.00158	TNK2	-	FALSE
chr1	167759281	T	C	0.00923	MPZL1	+	FALSE
chr1	32833539	T	C	1.95166E-05	BSDC1	-	TRUE
chr1	45452227	G	C	0.00256	EIF2B3	-	FALSE
chr14	50053348	G	A	0.00067		.	FALSE	7SLRNA	SINE,Alu
chr1	207943385	A	G	0.00751	CD46	+	TRUE	AluSx1	SINE,Alu
chr1	6704635	A	G	0.00978	DNAJC11	-	FALSE
chr7	100064719	A	G	0.00276	TSC22D4	-	FALSE
chr4	155457052	T	A	0.00833	PLRG1	-	FALSE	L2d2	SINE,Alu
chr7	55433880	G	C	0.00778	LANCL2	+	FALSE
chr5	32586597	G	C	0.00970	SUB1	+	FALSE
chr7	137561078	G	A	0.00558	CREB3L2	-	FALSE	(GT)n	SINE,Alu
chr22	17129526	A	G	0.00485	TPTEP1	+	TRUE	AluSz	SINE,Alu
chr10	61548857	C	A	0.00046	CCDC6	-	FALSE
chr17	46024807	C	T	0.00295	PNPO	+	FALSE
chr1	1534614	T	C	5.67045E-11	FNDC10	-	FALSE
chr1	46075661	A	G	0.00071	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	6282426	T	C	0.00513	ICMT	-	TRUE	AluSz	SINE,Alu
chr17	45761110	G	T	0.00816		.	FALSE
chr1	19199221	C	T	0.00676	ALDH4A1	-	FALSE
chr2	206980072	G	A	1.35396E-05		.	FALSE	MLT1A1	SINE,Alu
chr1	184761162	T	C	0.00685	FAM129A	-	TRUE	AluJo	SINE,Alu
chr17	421034	T	C	0.00998	VPS53	-	TRUE	AluSx1	SINE,Alu
chr1	21100862	C	A	0.00012	HP1BP3	-	FALSE	(AC)n	SINE,Alu
chr3	194789663	T	C	0.00754	XXYLT1	-	FALSE	MARNA	SINE,Alu
chr2	203741065	T	C	2.92684E-06		.	FALSE
chr1	148556726	G	T	0.00023		.	FALSE
chr1	10520045	T	C	0.00085		.	FALSE	AluSx	SINE,Alu
chr1	1593060	T	C	0.00538	CDK11B,SLC35E2B	-	FALSE
chr1	6308456	G	A	0.00169	GPR153	-	FALSE
chr1	169768080	C	A	0.00857	C1orf112	+	FALSE
chr2	30381505	T	C	0.00820	YPEL5	+	FALSE
chr1	10520099	T	C	5.82547E-06		.	FALSE	AluSx	SINE,Alu
chr3	196315260	T	C	0.00102	FBXO45	+	FALSE
chr10	75009921	T	C	5.40286E-05	DNAJC9-AS1,MRPS16	+,-	FALSE	AluY	SINE,Alu
chr1	109475569	A	G	0.00046	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr12	125511958	A	G	0.00494	THRIL	-	FALSE	AluSx1	SINE,Alu
chr17	38974612	T	C	0.00963	KRT10	-	FALSE
chr15	89739348	A	G	0.00035	ABHD2	+	FALSE	MER5A	SINE,Alu
chr1	36067752	T	C	0.00031	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	211918115	C	T	7.42155E-06	LPGAT1	-	FALSE	MER63D	SINE,Alu
chr7	128144035	A	G	0.00054		.	FALSE	AluSq2	SINE,Alu
chr7	137612915	G	A	0.00057	CREB3L2	-	FALSE
chr16	89630630	C	T	0.00296	RPL13	+	FALSE
chr1	23636277	A	T	0.00188	HNRNPR	-	FALSE
chr21	34730010	A	G	0.00518	IFNAR1	+	TRUE	AluSg7	SINE,Alu
chr2	37429737	A	G	0.00439	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr1	9160975	T	C	0.00858		.	FALSE	AluJb	SINE,Alu
chr1	118411057	T	G	0.00254	GDAP2	-	FALSE
chr4	42088291	C	A	0.00000	SLC30A9	+	FALSE
chr1	1595074	T	C	0.00296	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr1	9740896	C	T	0.00078	PIK3CD,PIK3CD-AS2	+,-	FALSE	MLT1F1	SINE,Alu
chr21	34730108	A	G	0.00680	IFNAR1	+	TRUE	AluSg7	SINE,Alu
chr1	16200163	A	G	0.00112	SPEN	+	FALSE
chr1	11783001	A	G	0.00012		.	FALSE	AluSx	SINE,Alu
chr1	19282314	G	T	0.00158	IFFO2	-	FALSE
chr4	165998642	T	C	0.00021	TMEM192	-	TRUE	AluSg	SINE,Alu
chr4	39550612	T	C	0.00023	UGDH-AS1,SMIM14	+,-	FALSE	AluSx1	SINE,Alu
chr1	65330637	C	T	0.00251	JAK1	-	FALSE
chr16	10625406	T	C	1.26372E-11	EMP2	-	TRUE	AluSx	SINE,Alu
chr2	31557839	G	T	0.00014	XDH	-	FALSE	AluJr	SINE,Alu
chr1	40923019	G	A	0.00019	ZFP69B	+	FALSE
chr4	52888026	A	C	0.00677	SGCB	-	FALSE
chr4	47514685	C	T	2.65771E-05	ATP10D	+	FALSE
chr6	42856029	A	G	0.00099	RPL7L1	+	TRUE	AluSz	SINE,Alu
chrX	23721422	A	C	0.00160		.	FALSE
chr1	17522430	A	G	0.00684		.	FALSE
chr6	28873868	T	C	0.00041		.	FALSE	AluJo	SINE,Alu
chrM	2619	A	T	0.00012	RNR2	+	FALSE	LSU-rRNA_Hsa	SINE,Alu
chr15	41593269	A	G	0.00196		.	FALSE	AluSz6	SINE,Alu
chr3	33186111	T	C	0.00349	CRTAP	+	FALSE	LTR16A1	SINE,Alu
chr1	10517512	T	C	0.00498		.	FALSE	AluSx1	SINE,Alu
chr2	229890660	A	G	0.00596	PID1	-	FALSE
chr1	109605645	T	G	0.00478		.	FALSE	AluY	SINE,Alu
chr3	42826041	T	G	0.00019	HIGD1A	-	FALSE
chr6	3021465	T	C	0.00029	HTATSF1P2	-	TRUE	AluJr4	SINE,Alu
chr3	14526648	T	G	9.03719E-05	SLC6A6	+	FALSE
chr1	145441843	G	A	0.00744	NBPF20,NBPF10,TXNIP	+	FALSE
chr14	69708241	G	A	0.00748	EXD2	+	FALSE
chr18	11852628	C	T	0.00048	GNAL,CHMP1B	+	FALSE
chr4	6718811	A	G	1.36854E-07	BLOC1S4	+	FALSE	FLAM_A	SINE,Alu
chr1	16935130	C	T	0.00019	NBPF1	-	FALSE
chr1	36068370	T	C	3.60077E-09	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	47130850	A	G	0.00875	MCFD2	-	FALSE
chr14	24884880	T	G	0.00491	NYNRIN	+	FALSE
chr2	86249961	T	C	0.00368	LOC90784	-	TRUE	AluJr	SINE,Alu
chr2	204294497	C	T	0.00203	ABI2	+	FALSE
chr6	160101733	T	C	0.00784	SOD2	-	TRUE	AluSz	SINE,Alu
chr3	183529603	G	A	0.00219	YEATS2	+	FALSE
chr1	160967856	T	C	0.00027	F11R	-	TRUE	AluSp	SINE,Alu
chr3	98298600	C	T	3.56177E-11	CPOX	-	FALSE
chr1	145293012	G	A	0.00250	NBPF20	+	FALSE
chr17	78091513	G	A	0.00810	GAA	+	FALSE
chr7	65992794	T	C	0.00820		.	FALSE	AluJr	SINE,Alu
chr1	100489835	A	G	0.00230	SLC35A3	+	TRUE	AluSg	SINE,Alu
chr1	100316589	A	G	0.00147	AGL	+	FALSE
chr1	10520067	T	C	2.08449E-05		.	FALSE	AluSx	SINE,Alu
chr1	149783886	C	T	0.00526	HIST2H2BF	-	FALSE
chr1	9162206	T	C	0.00882		.	FALSE	AluSx	SINE,Alu
chr15	42503334	C	T	0.00448	TMEM87A	-	FALSE	(T)n	SINE,Alu
chr2	174090339	A	C	2.67746E-05	ZAK,MLK7-AS1	+,-	FALSE	AluSx	SINE,Alu
chr1	23636028	T	A	0.00029	HNRNPR	-	FALSE
chr19	16661421	T	C	0.00427	SLC35E1	-	TRUE	AluSz	SINE,Alu
chr1	21070406	C	A	0.00671	HP1BP3	-	FALSE	AluSx	SINE,Alu
chr4	17629937	G	A	0.00795		.	FALSE	MER90	SINE,Alu
chr12	53435276	T	G	4.45732E-05	EIF4B	+	FALSE
chr1	220970028	A	G	0.00444	MARC1	+	FALSE
chr14	74524774	T	C	0.00906	BBOF1,ALDH6A1	+,-	FALSE	AluSc8	SINE,Alu
chr1	22853141	G	A	0.00060	ZBTB40	+	FALSE
chr8	25272447	A	T	0.00770	DOCK5	+	FALSE
chr19	19792444	A	G	0.00686	ZNF101	+	TRUE	AluJb	SINE,Alu
chr7	130629624	T	C	0.00568	LINC-PINT	-	TRUE
chr8	30536437	T	C	0.00062	GSR	-	FALSE	AluSp	SINE,Alu
chr2	99812289	A	G	0.00040	MRPL30	+	TRUE	AluSx	SINE,Alu
chr3	179117241	T	C	0.00133	GNB4	-	TRUE	AluSz	SINE,Alu
chr2	27293350	A	T	0.00314	AGBL5,OST4	+,-	FALSE
chr1	900505	G	C	0.00388	KLHL17	+	FALSE
chr16	75479250	T	C	0.00568	TMEM170A	-	TRUE	AluJb	SINE,Alu
chr1	200521412	G	A	0.00110	KIF14	-	FALSE
chr19	3465142	T	C	0.00100	NFIC	+	FALSE
chr17	73702478	G	C	8.31704E-05	SAP30BP	+	FALSE
chr1	148753279	G	T	0.00358		.	FALSE
chr1	6314822	T	C	0.00300	GPR153	-	FALSE
chr14	65400786	T	G	0.00077	CHURC1-FNTB,CHURC1	+	FALSE	AluSx	SINE,Alu
chr7	100031498	T	C	0.00110	MEPCE	+	FALSE
chr1	16928622	C	A	0.00011	NBPF1	-	FALSE
chr1	33149266	A	G	0.00292	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	10519888	T	C	0.00986		.	FALSE	AluJr	SINE,Alu
chr1	3731959	C	T	0.00089	CEP104	-	FALSE
chr5	41917695	C	T	0.00546	C5orf51	+	FALSE
chr9	125887703	A	C	0.00067	STRBP	-	FALSE
chr1	31905889	A	G	0.00483	SERINC2	+	FALSE
chr1	169293721	G	A	0.00978	NME7	-	FALSE
chr2	128064422	C	T	0.00039	MAP3K2	-	FALSE
chr5	40832557	G	T	0.00814	RPL37	-	FALSE
chr1	205739266	C	T	0.00069	RAB29	-	FALSE
chr1	36068325	T	C	0.00065	PSMB2	-	TRUE	AluSc	SINE,Alu
chr14	105270483	G	T	7.92193E-06	ZBTB42	+	FALSE
chr8	144827206	A	T	0.00196	FAM83H-AS1	+	FALSE	ERVL-B4-int	SINE,Alu
chr1	145273302	A	G	0.00656	NBPF20,NOTCH2NL	+	FALSE
chr1	36068295	T	C	2.11660E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	21793735	C	G	0.00405	NBPF3	+	FALSE
chr3	48787042	T	C	1.97898E-05	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr1	89447720	G	A	0.00030	KYAT3,RBMXL1	-	FALSE
chr15	82336939	G	A	2.47536E-05	MEX3B	-	FALSE
chr16	69338754	T	C	0.00210	SNTB2	+	FALSE	AluJr	SINE,Alu
chr1	1595078	T	C	0.00714	CDK11B,SLC35E2B	-	FALSE	AluSg	SINE,Alu
chr6	74134781	T	C	0.00789		.	FALSE	AluSz	SINE,Alu
chr17	57279253	A	G	1.08987E-07	PRR11	+	TRUE	AluSq2	SINE,Alu
chr5	179720333	A	G	0.00308		.	FALSE
chr1	33139061	T	C	0.00079	RBBP4	+	FALSE	AluSx3	SINE,Alu
chr2	91847987	C	G	0.00083		.	FALSE	TAR1	SINE,Alu
chr1	52306075	T	C	8.71211E-05	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr1	179042697	A	G	0.00092	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr7	44047381	G	A	0.00912	POLR2J4,SPDYE1	+,-	FALSE
chr4	76568481	A	T	0.00744	G3BP2	-	FALSE	(TA)n	SINE,Alu
chr3	28390351	A	G	0.00200	AZI2	-	FALSE
chr7	75045694	C	T	1.64957E-05	NSUN5P1	+	FALSE
chr1	94995585	G	A	0.00266	F3	-	FALSE	AluSx	SINE,Alu
chr2	37327589	T	C	0.00253		.	FALSE
chr1	145509569	A	G	0.00405	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr3	17200672	C	A	0.00665	TBC1D5	-	FALSE
chr3	15113810	T	C	0.00201	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	120539687	T	C	0.00179	NOTCH2	-	FALSE
chr4	17803616	T	C	1.55934E-06	DCAF16	-	TRUE	AluY	SINE,Alu
chr1	9328094	A	G	0.00107	H6PD	+	TRUE	AluJr	SINE,Alu
chr4	6925237	C	G	0.00870	TBC1D14	+	FALSE
chr1	153599390	T	C	0.00135	S100A13	-	FALSE
chr17	38798073	T	G	0.00692	SMARCE1	-	FALSE
chr1	36386884	C	T	0.00375	AGO1	+	FALSE
chr2	72968438	G	T	0.00147	EXOC6B	-	FALSE
chr1	19586519	A	G	0.00015	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	9643054	A	G	5.80579E-05		.	FALSE	AluSx	SINE,Alu
chr3	42592874	T	C	9.28376E-05	SEC22C	-	FALSE	AluJr	SINE,Alu
chr1	231557255	C	G	0.00056	EGLN1	-	FALSE	(GCC)n	SINE,Alu
chr1	95362514	G	T	0.00279	CNN3	-	FALSE
chr6	109001952	A	G	0.00978	FOXO3	+	FALSE	(A)n	SINE,Alu
chr5	64097145	C	G	0.00361	CWC27	+	FALSE
chr3	13670508	G	A	0.00017	FBLN2	+	FALSE
chr8	97506373	C	G	0.00579	SDC2	+	FALSE	(CCCCGAG)n	SINE,Alu
chr12	133298254	A	G	0.00849	PGAM5	+	TRUE	AluSp	SINE,Alu
chr2	74442550	A	T	0.00826		.	FALSE
chr2	12858202	C	T	0.00873	TRIB2	+	FALSE
chr1	145293059	A	G	0.00063	NBPF20	+	FALSE
chr1	117530477	G	A	0.00223	PTGFRN	+	FALSE
chr2	87002706	G	A	0.00178	RMND5A	+	FALSE
chr19	50412217	C	G	0.00017	IL4I1,NUP62	-	FALSE	(GGT)n	SINE,Alu
chr1	28564252	A	G	0.00118	ATPIF1	+	FALSE
chr1	36067851	T	C	0.00269	PSMB2	-	TRUE	AluSz	SINE,Alu
chr3	195243012	A	C	0.00128	PPP1R2	-	FALSE
chr1	44088568	G	A	0.00274	PTPRF	+	FALSE	A-rich	SINE,Alu
chr1	23636278	A	T	0.00442	HNRNPR	-	FALSE
chr1	7737792	C	G	8.96820E-06	CAMTA1	+	FALSE
chr5	115165731	T	C	5.24208E-07	ATG12	-	TRUE	AluSq2	SINE,Alu
chr11	86646405	C	A	9.05139E-05	PRSS23	+	FALSE	L2b	SINE,Alu
chr2	99772813	A	G	0.00670	LIPT1	+	TRUE	AluSx1	SINE,Alu
chr2	37331269	T	C	0.00781		.	FALSE	AluSx1	SINE,Alu
chr1	36535560	A	G	0.00059		.	FALSE	AluSx1	SINE,Alu
chr3	195776630	T	A	7.10429E-08	TFRC	-	FALSE
chr16	87443734	C	T	0.00074	ZCCHC14	-	FALSE
chr1	86049302	A	G	0.00114	CYR61	+	FALSE
chr1	161160460	T	A	0.00298	ADAMTS4	-	FALSE	(CA)n	SINE,Alu
chr14	31916944	T	C	1.05468E-06	LOC101927124,DTD2	+,-	FALSE	AluSc8	SINE,Alu
chr3	57612271	T	C	0.00831	DENND6A,PDE12	+,-	FALSE	AluSp	SINE,Alu
chr1	36068231	T	C	0.00582	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	43748051	A	G	0.00489	C1orf210	-	FALSE	L2c	SINE,Alu
chr19	53155567	T	C	0.00137	ZNF83	-	TRUE	AluSg	SINE,Alu
chr3	15114288	T	C	7.51597E-05	RBSN	-	TRUE	AluY	SINE,Alu
chr3	12882839	C	G	0.00118	RPL32	-	FALSE
chr8	48889823	C	A	0.00770	MCM4	+	FALSE	AluSx3	SINE,Alu
chr1	6282371	T	C	0.00054	ICMT	-	TRUE	AluSz	SINE,Alu
chr6	114181223	A	G	0.00365	MARCKS	+	FALSE
chr2	74686329	C	T	0.00640	INO80B-WBP1,WBP1	+	FALSE
chr10	112596282	C	T	0.00885	RBM20	+	FALSE
chr1	28826023	A	G	0.00143	PHACTR4	+	FALSE	AluJb	SINE,Alu
chr2	27466552	G	C	0.00396	CAD	+	FALSE
chr1	93301947	C	T	0.00039	FAM69A,RPL5	+,-	FALSE
chr1	16576836	A	G	0.00885	FBXO42	-	FALSE
chr1	24798498	C	T	0.00131	NIPAL3	+	FALSE
chr1	52306079	T	A	0.00606	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr1	168220364	A	G	6.18665E-05		.	FALSE	AluSz6	SINE,Alu
chr1	210025751	G	A	0.00067	DIEXF	+	FALSE	Tigger4a	SINE,Alu
chr1	6282324	T	C	0.00142	ICMT	-	TRUE	AluSz	SINE,Alu
chr4	95586725	T	A	0.00743	PDLIM5	+	FALSE
chr1	6473294	A	G	0.00013		.	FALSE	Arthur1C	SINE,Alu
chr1	1718810	G	A	5.85228E-05	GNB1	-	FALSE
chr4	25749192	C	T	0.00642	SEL1L3	-	FALSE
chr19	23542304	T	C	2.38814E-05	ZNF91	-	TRUE	AluY	SINE,Alu
chr16	10625266	T	C	0.00587	EMP2	-	TRUE	AluSx	SINE,Alu
chr12	88454641	A	T	0.00753	CEP290	-	FALSE
chr1	94335191	C	T	0.00382	DNTTIP2	-	FALSE
chr12	133298254	A	G	1.64181E-10	PGAM5	+	TRUE	AluSp	SINE,Alu
chr3	40578843	A	G	0.00749	ZNF621	+	TRUE	AluJr	SINE,Alu
chr1	1152631	C	A	0.00439	SDF4	-	FALSE
chr1	24022910	G	A	0.00702	RPL11	+	FALSE
chr2	128951094	A	G	0.00415	UGGT1	+	TRUE	AluSx1	SINE,Alu
chr1	10518875	T	C	0.00127		.	FALSE	AluSx1	SINE,Alu
chr2	206987205	T	C	0.00039		.	FALSE	AluSx	SINE,Alu
chr1	31345785	T	A	0.00962	SDC3	-	FALSE
chr1	23636274	G	T	0.00165	HNRNPR	-	FALSE
chr1	54691465	C	T	0.00064	SSBP3	-	FALSE
chr1	184762524	T	C	0.00260	FAM129A	-	TRUE	AluSz	SINE,Alu
chr1	16890656	C	T	0.00812	NBPF1	-	FALSE
chr1	212587320	T	C	0.00023	TMEM206	-	FALSE
chr1	179044100	A	G	0.00219	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	100388748	T	C	0.00445	AGL	+	FALSE
chr1	118066459	A	G	0.00788	MAN1A2	+	FALSE
chr18	33831189	C	A	0.00763	MOCOS	+	FALSE
chr1	220231254	T	C	0.00376	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr14	23794557	T	A	0.00983	BCL2L2-PABPN1,PABPN1	+	FALSE	A-rich	SINE,Alu
chr1	19984107	G	A	0.00963	MINOS1-NBL1,NBL1	+	FALSE
chr1	156084582	T	C	0.00195	LMNA	+	FALSE
chr19	19793168	A	G	0.00481	ZNF101	+	TRUE	AluSz	SINE,Alu
chr15	93568295	G	A	0.00225	CHD2	+	FALSE
chr3	191114309	A	T	1.88175E-05	CCDC50	+	FALSE
chr1	9163110	T	C	4.21626E-05		.	FALSE	FRAM	SINE,Alu
chr1	145688665	T	A	0.00015	NBPF20,NBPF10,RNF115	+	FALSE
chr1	100440553	A	G	9.79324E-05	SLC35A3	+	TRUE	AluJb	SINE,Alu
chr2	191556844	T	A	0.00261	NAB1	+	FALSE
chr1	6583066	T	C	0.00173	NOL9	-	TRUE	AluSx4	SINE,Alu
chr12	131356731	T	C	2.96756E-07	RAN	+	FALSE	(GGCCGG)n	SINE,Alu
chr1	28826118	A	G	0.00948	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr2	128601583	T	C	0.00550		.	FALSE	AluJr	SINE,Alu
chr6	43582795	A	G	0.00087	POLH	+	TRUE	AluSx1	SINE,Alu

RBP	TUFM
Knock-Method	shRNA
RBP Family	GTP_EFTU
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR459EMR
Platform	HiSeq
Pubmed ID	32252787

TUFM - Target Gene Network