RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	33148691	A	G	0.00207	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	40219065	C	T	0.00232	PPIE	+	FALSE
chr1	36067925	T	C	2.33961E-06	PSMB2	-	TRUE	AluSz	SINE,Alu
chr2	190617700	T	C	1.38394E-05	OSGEPL1	-	FALSE
chr7	100957852	T	C	1.09184E-06	LOC101927746,IFT22	+,-	FALSE	MADE1	SINE,Alu
chr1	16918502	A	G	0.00098	NBPF1	-	FALSE
chr1	226923264	G	A	0.00046	ITPKB	-	FALSE
chr2	36704034	A	G	9.89157E-05	CRIM1	+	FALSE
chr5	74072638	G	A	0.00431	NSA2	+	FALSE
chr2	191069434	G	A	0.00680	HIBCH	-	FALSE
chr1	100150196	A	G	0.00176	PALMD	+	TRUE	AluJr	SINE,Alu
chr1	36067784	T	C	2.18848E-07	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	9331227	A	G	0.00181	H6PD	+	TRUE	AluSx	SINE,Alu
chr1	28836048	G	A	0.00035	SNHG3,RCC1	+	FALSE	AluSx4	SINE,Alu
chr1	46075663	A	G	0.00061	NASP	+	TRUE	AluSx4	SINE,Alu
chr2	102508659	A	T	0.00261	MAP4K4	+	FALSE
chr4	56291623	G	T	0.00490	TMEM165	+	FALSE
chr2	164466038	C	A	0.00021	FIGN	-	FALSE
chr10	120795222	A	T	0.00193	EIF3A	-	FALSE
chr1	38327542	T	C	0.00068	INPP5B	-	TRUE	AluSx3	SINE,Alu
chr1	38155699	T	G	0.00734	C1orf109	-	FALSE	AluSx1	SINE,Alu
chr1	94335332	G	T	0.00973	DNTTIP2	-	FALSE
chr14	70838268	T	C	0.00365	SYNJ2BP-COX16,SYNJ2BP	-	TRUE	AluSg	SINE,Alu
chr2	98272734	A	G	0.00996	ACTR1B	-	FALSE
chr1	16932809	C	T	0.00887	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	16953672	C	T	0.00243	CROCCP2	-	FALSE
chr3	39450156	A	G	0.00985	RPSA	+	FALSE
chr1	33148225	A	G	0.00031	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	234561498	T	C	0.00092	TARBP1	-	FALSE
chr9	136209397	G	C	0.00709	MED22	-	FALSE
chr9	115446725	T	C	0.00037	INIP	-	TRUE	AluJr	SINE,Alu
chr6	31110789	T	C	0.00798		.	FALSE
chr1	16929100	C	T	0.00911	NBPF1	-	FALSE	LTR16B2	SINE,Alu
chr1	148004307	T	C	0.00935	NBPF8	-	FALSE
chr1	16133912	T	C	0.00126	UQCRHL	-	TRUE
chr22	18571345	A	G	0.00113	PEX26	+	TRUE	AluSz	SINE,Alu
chr20	25428646	A	G	9.98122E-05	GINS1	+	TRUE	AluJb	SINE,Alu
chr1	67874854	T	C	0.00358	SERBP1	-	TRUE	AluSx	SINE,Alu
chr1	150704486	T	C	0.00947	CTSS	-	TRUE	AluJo	SINE,Alu
chr1	6583036	T	C	0.00296	NOL9	-	TRUE	AluSx4	SINE,Alu
chr5	43298557	C	T	0.00643	HMGCS1	-	FALSE
chr1	1594977	T	C	0.00314	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr1	11347154	A	T	0.00441	UBIAD1	+	FALSE
chr4	13601337	G	A	7.28365E-09	BOD1L1	-	FALSE
chr8	62538200	A	T	0.00552	ASPH	-	FALSE
chr5	178986978	C	G	0.00341	RUFY1	+	FALSE
chr19	21474901	T	C	1.34658E-06	ZNF708	-	TRUE	AluSc	SINE,Alu
chr1	46782446	A	G	0.00145	UQCRH	+	FALSE
chr2	174090631	A	C	0.00038	ZAK,MLK7-AS1	+,-	FALSE
chr1	67874731	T	C	0.00565	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	224380757	A	G	0.00618	DEGS1	+	FALSE	AluSx	SINE,Alu
chr1	46077218	A	G	0.00543	NASP	+	TRUE	AluSc8	SINE,Alu
chr1	6160958	A	G	0.00967	KCNAB2	+	FALSE
chr17	38798073	T	G	0.00692	SMARCE1	-	FALSE
chr1	1595078	T	C	0.00714	CDK11B,SLC35E2B	-	FALSE	AluSg	SINE,Alu
chr1	880052	C	T	0.00231	NOC2L	-	FALSE
chr1	10519888	T	C	0.00878		.	FALSE	AluJr	SINE,Alu
chr20	35521049	G	A	0.00711	TLDC2,SAMHD1	+,-	FALSE
chr2	20450819	T	C	0.00807	PUM2	-	TRUE
chr2	113494520	T	C	0.00267	CKAP2L	-	FALSE	AluSx1	SINE,Alu
chr2	64863970	C	T	9.52027E-09	SERTAD2	-	FALSE
chr1	120162587	G	A	0.00730	ZNF697	-	FALSE
chr1	1164179	G	A	0.00983	SDF4	-	FALSE	G-rich	SINE,Alu
chr14	74431191	A	G	0.00670	ENTPD5	-	FALSE
chr3	191115082	G	C	0.00037	CCDC50	+	FALSE
chr1	142688597	C	T	0.00605		.	FALSE
chr1	32377391	G	A	0.00439	PTP4A2	-	FALSE
chr3	137787047	C	T	0.00735	DZIP1L	-	FALSE
chr3	196079691	T	C	0.00507		.	FALSE	AluSc	SINE,Alu
chr1	28661718	A	G	0.00520	MED18	+	TRUE	AluSg	SINE,Alu
chr1	10520715	T	C	0.00119	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	193222534	G	T	0.00504	CDC73	+	FALSE	(TGT)n	SINE,Alu
chr1	101444791	C	T	0.00268	SLC30A7	+	FALSE
chr4	2841551	A	G	0.00258	SH3BP2	+	TRUE	AluJr	SINE,Alu
chr1	21101369	T	C	0.00028	HP1BP3	-	TRUE	AluSc	SINE,Alu
chr1	93297590	C	A	0.00325		.	FALSE
chr5	139931631	G	C	0.00138	SRA1	-	FALSE
chr1	55207985	G	A	0.00156	MROH7-TTC4,TTC4	+	FALSE
chr1	1594977	T	C	0.00749	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr10	70742774	A	T	0.00504	DDX21	+	FALSE
chr1	327441	A	G	1.08612E-09		.	FALSE
chr3	24019977	A	C	0.00281	NR1D2	+	FALSE
chr2	36706788	C	G	0.00481	CRIM1	+	FALSE
chr1	19543353	T	C	0.00101	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	9161231	T	C	0.00481		.	FALSE	AluSx	SINE,Alu
chr5	205565	G	A	0.00593	CCDC127	-	FALSE
chr3	197612430	A	G	0.00052		.	FALSE	AluSp	SINE,Alu
chr14	105270478	G	T	0.00252	ZBTB42	+	FALSE
chr1	28826085	A	G	0.00196	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr4	139091459	T	C	9.74854E-05	SLC7A11-AS1,SLC7A11	+,-	FALSE	(TA)n	SINE,Alu
chr3	172117457	C	A	0.00037	FNDC3B	+	FALSE
chr7	44841933	A	G	0.00192	PPIA	+	TRUE	AluSx	SINE,Alu
chr1	118066459	A	G	0.00788	MAN1A2	+	FALSE
chr1	46075189	C	A	0.00597	NASP	+	FALSE	A-rich	SINE,Alu
chr1	54691905	C	G	0.00611	SSBP3	-	FALSE
chr1	87211940	A	C	0.00164	SH3GLB1	+	FALSE
chr5	6668842	C	T	4.46208E-05	SRD5A1	+	FALSE
chr1	32631809	C	T	2.91083E-08	KPNA6	+	FALSE
chr1	225974592	T	G	2.09928E-05	SRP9	+	FALSE	AluJr	SINE,Alu
chr7	300513	T	C	2.92808E-06	FAM20C	+	FALSE
chr1	16893721	A	C	0.00179	NBPF1	-	FALSE
chr19	63721	T	G	0.00602	WASH5P	-	FALSE
chr1	28825418	A	G	0.00525	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr7	44917291	T	C	0.00019	PURB	-	TRUE	AluSz	SINE,Alu
chr8	95805071	A	G	1.12730E-06	DPY19L4	+	TRUE	AluYf1	SINE,Alu
chr3	69026314	G	A	0.00881	EOGT	-	FALSE	AluSz6	SINE,Alu
chr1	16918502	A	G	0.00437	NBPF1	-	FALSE
chr18	2544702	G	A	0.00522	METTL4	-	FALSE
chr2	37327685	T	C	6.61966E-05		.	FALSE
chr1	145513016	A	G	0.00400	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr3	100467676	A	T	0.00288	TFG	+	FALSE
chr8	145159706	C	G	0.00561	MAF1	+	FALSE
chr1	11780004	G	T	0.00216	DRAXIN	+	FALSE
chr1	789050	G	A	0.00449	LINC01128	+	FALSE
chr1	148252049	A	C	0.00042	NBPF8,NBPF14,NBPF9	-	FALSE
chr1	23419855	T	C	0.00555	LUZP1	-	FALSE
chr2	101893247	C	A	0.00237	RNF149	-	FALSE	(A)n	SINE,Alu
chr1	8938276	T	A	0.00178	ENO1	-	FALSE
chr2	181737842	C	T	0.00350	SCHLAP1	+	FALSE
chr2	174090336	A	C	0.00331	ZAK,MLK7-AS1	+,-	FALSE	AluSx	SINE,Alu
chr3	196079280	T	C	0.00614		.	FALSE	AluSx	SINE,Alu
chr1	1152309	A	T	0.00030	SDF4	-	FALSE
chr1	108728562	A	T	0.00228	SLC25A24	-	FALSE
chr1	121133779	C	G	2.29819E-05	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	L1MB4	SINE,Alu
chr17	45219755	G	T	0.00592	CDC27	-	FALSE
chr1	148003749	T	C	0.00114	NBPF8	-	TRUE	L1MC4	SINE,Alu
chr1	145512081	A	G	0.00579	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr2	37331560	T	C	6.28398E-05		.	FALSE	AluJb	SINE,Alu
chr1	71531596	A	G	0.00016	ZRANB2-AS1,ZRANB2	+,-	FALSE
chr1	1595500	T	C	0.00845	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr9	34088016	G	A	0.00226	DCAF12	-	FALSE
chr17	73886219	T	C	8.52474E-05	TRIM65	-	TRUE	FRAM	SINE,Alu
chr17	5288079	A	C	0.00085	RABEP1	+	FALSE
chr1	33149266	A	G	0.00292	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr6	34254585	G	T	0.00519		.	FALSE	AluSq2	SINE,Alu
chr1	1650801	T	C	0.00761	CDK11B,CDK11A	-	FALSE
chr10	60047612	A	G	0.00015	CISD1	+	FALSE	(A)n	SINE,Alu
chr1	28833494	G	A	0.00122	SNHG3,RCC1	+	FALSE
chr2	161130868	A	C	0.00297	RBMS1	-	FALSE
chr1	35648712	G	A	0.00298	SFPQ	-	FALSE
chr2	24494638	T	G	0.00495	ITSN2	-	FALSE	(TATCCT)n	SINE,Alu
chr1	31345785	T	A	0.00962	SDC3	-	FALSE
chr3	40577752	A	G	0.00111	ZNF621	+	TRUE	AluSz	SINE,Alu
chr1	109746825	A	G	0.00094	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr15	42860107	A	G	0.00194	HAUS2	+	TRUE	AluSg	SINE,Alu
chr5	34189578	T	C	0.00378		.	FALSE
chr22	22050366	T	C	0.00449	PPIL2	+	FALSE	MER5A	SINE,Alu
chr5	72801323	C	A	0.00119	BTF3	+	FALSE
chr1	185069687	C	T	0.00072	RNF2	+	FALSE
chr19	58375707	A	G	0.00156	ZNF587	+	TRUE	AluSg	SINE,Alu
chr2	85132773	C	A	5.10736E-05	TMSB10	+	FALSE
chr2	37429733	A	G	0.00381	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr1	12677547	G	A	0.00543	DHRS3	-	FALSE	(A)n	SINE,Alu
chr1	46032311	A	G	0.00043	AKR1A1	+	FALSE
chr1	6314822	T	C	0.00300	GPR153	-	FALSE
chr1	1594940	T	C	0.00115	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr1	25893932	T	C	0.00866	LDLRAP1	+	FALSE
chr1	179326908	A	G	0.00037	SOAT1	+	TRUE	AluJo	SINE,Alu
chr7	48146025	A	G	0.00106	UPP1	+	TRUE	AluSq	SINE,Alu
chr1	109816462	C	T	0.00083	CELSR2	+	FALSE
chr2	25044957	G	A	0.00651	CENPO,ADCY3	+,-	FALSE
chr15	41597559	A	G	0.00127		.	FALSE	AluSz6	SINE,Alu
chr1	47905553	G	A	0.00098	FOXD2	+	FALSE
chr1	113000565	A	G	0.00216	CTTNBP2NL	+	FALSE
chr1	15736752	G	A	0.00170	EFHD2	+	FALSE
chr1	214531239	C	T	6.46771E-05	PTPN14	-	FALSE
chr1	1001422	G	T	0.00998		.	FALSE	LTR13A	SINE,Alu
chr1	94343023	A	G	0.00363	DNTTIP2	-	FALSE
chr1	184761350	T	C	0.00219	FAM129A	-	TRUE	AluJo	SINE,Alu
chr7	300181	G	A	2.39021E-07	FAM20C	+	FALSE
chr1	145689812	A	G	0.00431	NBPF20,NBPF10	+	TRUE	AluJb	SINE,Alu
chr1	100489619	A	G	0.00319	SLC35A3	+	TRUE
chr1	28598287	C	T	0.00188	SESN2	+	FALSE
chr1	145281633	C	A	0.00059	NBPF20,NOTCH2NL	+	FALSE
chr3	179117128	T	C	0.00112	GNB4	-	TRUE	AluSz	SINE,Alu
chr1	32661578	C	T	0.00623	TXLNA	+	FALSE	(T)n	SINE,Alu
chr3	58306802	G	A	4.03384E-05		.	FALSE	AluSz	SINE,Alu
chr1	36067677	T	C	5.01583E-07	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	1252441	T	C	0.00086	CPSF3L	-	TRUE	AluJr	SINE,Alu
chr1	25893928	T	A	0.00388	LDLRAP1	+	FALSE
chr17	4929004	A	G	0.00030	KIF1C	+	TRUE	AluY	SINE,Alu
chr1	225678219	T	C	0.00080	ENAH	-	TRUE	AluSx	SINE,Alu
chr1	93803490	T	C	0.00572	CCDC18-AS1	-	FALSE	AluJr	SINE,Alu
chr1	148595665	A	G	0.00062	NBPF15	+	TRUE	L1MC4	SINE,Alu
chr1	36068276	T	C	0.00067	PSMB2	-	TRUE	AluSc	SINE,Alu
chr6	7250960	G	A	0.00889	RREB1	+	FALSE
chr1	10517290	T	C	0.00366		.	FALSE	AluJr	SINE,Alu
chr2	37328097	T	C	0.00301		.	FALSE
chr2	198416724	A	T	0.00378	HSPE1-MOB4,MOB4	+	FALSE
chr2	68402796	C	T	0.00656	PNO1	+	FALSE
chr7	44800040	C	A	0.00565	ZMIZ2	+	FALSE
chr10	82192266	A	G	0.00391	FAM213A	+	TRUE	AluSx1	SINE,Alu
chr10	15120275	T	C	0.00387	ACBD7	-	TRUE	L1PA7	SINE,Alu
chr3	45721990	A	G	0.00022	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	160967856	T	C	0.00116	F11R	-	TRUE	AluSp	SINE,Alu
chr16	70695982	T	C	0.00926	MTSS1L	-	FALSE
chr1	27107651	A	T	0.00200	ARID1A	+	FALSE	(A)n	SINE,Alu
chr2	174090636	T	A	0.00043	ZAK,MLK7-AS1	+,-	FALSE
chr1	8045340	C	A	0.00056	PARK7	+	FALSE
chr1	16932594	T	C	0.00064	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr5	125961648	A	G	0.00031	PHAX	+	FALSE	AluSz6	SINE,Alu
chr8	56985610	A	T	0.00041	RPS20	-	FALSE
chr3	69104669	C	T	0.00113	UBA3	-	FALSE
chr1	40537944	C	A	0.00371	CAP1	+	FALSE
chr6	31324705	A	C	0.00179		.	FALSE
chr1	1661751	A	G	0.00037	SLC35E2	-	FALSE
chr1	19586520	A	G	0.00659	MRTO4	+	TRUE	AluSz	SINE,Alu
chr12	56510697	G	A	0.00989	RPL41	+	FALSE
chr1	148003752	T	C	3.77288E-10	NBPF8	-	TRUE	L1MC4	SINE,Alu
chr1	10517653	T	C	0.00475		.	FALSE	AluSx1	SINE,Alu
chr1	148252049	A	C	0.00493	NBPF8,NBPF14,NBPF9	-	FALSE
chr6	27425185	C	A	0.00577	ZNF184	-	FALSE
chr1	145291217	C	T	0.00075	NBPF20	+	FALSE
chr11	9602076	T	C	7.58058E-05	WEE1	+	FALSE	AluSg	SINE,Alu
chr7	100031495	C	T	0.00475	MEPCE	+	FALSE
chr1	10517512	T	C	0.00646		.	FALSE	AluSx1	SINE,Alu
chr1	143399383	T	A	0.00053		.	FALSE	L1MC4	SINE,Alu
chr1	144922583	G	A	0.00101	NBPF20,PDE4DIP	+,-	FALSE
chr1	32661615	A	T	0.00033	TXLNA	+	FALSE
chr1	3545191	C	T	0.00597	TPRG1L	+	FALSE
chr1	3729182	T	C	0.00300	CEP104	-	TRUE	AluSx3	SINE,Alu
chr6	33384325	G	T	0.00456		.	FALSE
chr1	151288172	G	A	0.00312	PI4KB	-	FALSE
chr6	42855972	A	G	3.93003E-05	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr2	28636644	A	G	0.00918	FOSL2	+	FALSE
chr1	40213234	A	G	0.00146	PPIE	+	TRUE	AluSx3	SINE,Alu
chr1	50883798	T	C	0.00156	DMRTA2	-	FALSE
chr2	37329300	T	C	0.00050		.	FALSE	AluJr4	SINE,Alu
chr9	124094999	G	T	0.00764	GSN	+	FALSE	(TG)n	SINE,Alu
chr20	309186	A	G	0.00665	SOX12	+	FALSE	A-rich	SINE,Alu
chr1	17345250	A	T	0.00183	SDHB	-	FALSE
chr2	114352179	G	A	1.68965E-05	WASH2P	+	FALSE
chr1	148023067	C	T	0.00772	NBPF8	-	FALSE
chr1	55060362	G	A	0.00246	ACOT11	+	FALSE
chr4	165998149	T	C	0.00057	TMEM192	-	TRUE	AluSx	SINE,Alu
chr1	26143725	A	T	0.00920	SEPN1	+	FALSE	AluSx	SINE,Alu
chr6	42854580	A	G	0.00330	RPL7L1	+	TRUE	AluSc	SINE,Alu
chr2	61150192	C	A	0.00436	REL	+	FALSE	AluSz6	SINE,Alu
chr6	47594192	C	T	0.00591	CD2AP	+	FALSE
chr1	145303971	A	G	0.00060	NBPF20,NBPF10	+	FALSE
chr4	185309400	T	A	0.00250	IRF2	-	FALSE	(GGGAT)n	SINE,Alu
chr1	33148635	A	G	5.38540E-05	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chrX	24095285	A	G	0.00135	EIF2S3	+	TRUE	AluSx	SINE,Alu
chr1	228520973	C	G	0.00875	OBSCN	+	FALSE
chr3	33909611	C	T	0.00598	PDCD6IP	+	FALSE
chr4	177252326	A	G	2.59441E-08	SPCS3	+	TRUE
chr1	10438014	A	C	0.00046	KIF1B	+	FALSE
chr3	124732407	T	G	0.00405	HEG1	-	FALSE
chr7	65618870	A	G	0.00097	CRCP	+	TRUE	AluSx3	SINE,Alu
chr1	153533586	T	C	0.00358	S100A2	-	FALSE	Charlie18a	SINE,Alu
chr2	27466552	G	C	0.00396	CAD	+	FALSE
chr6	31506635	T	G	6.78064E-05		.	FALSE
chr1	94352553	C	T	0.00136	GCLM	-	FALSE	AluSx1	SINE,Alu
chr1	179044181	A	G	0.00083	FAM20B	+	TRUE	AluSx	SINE,Alu
chr4	165998152	T	C	0.00288	TMEM192	-	TRUE	AluSx	SINE,Alu
chr1	144816555	C	T	0.00530	NBPF20,NBPF9	+	FALSE
chr1	77556766	T	A	0.00576	PIGK	-	FALSE
chr2	56150864	C	T	0.00615	EFEMP1	-	FALSE
chr4	169847647	A	T	0.00328	PALLD	+	FALSE
chr2	106510201	C	A	0.00638	NCK2	+	FALSE
chr1	120611960	C	T	0.00062	NOTCH2	-	FALSE
chr5	98109389	T	C	0.00234	RGMB	+	FALSE
chr1	207943385	A	G	0.00751	CD46	+	TRUE	AluSx1	SINE,Alu
chr1	145281633	C	A	0.00510	NBPF20,NOTCH2NL	+	FALSE
chr10	13320110	T	C	0.00193	PHYH	-	FALSE
chr4	113346996	G	A	0.00191	ALPK1	+	FALSE
chr1	16945227	G	T	0.00090	CROCCP2	-	FALSE
chr1	16945027	T	C	2.31134E-07	CROCCP2	-	FALSE	L1ME3Cz	SINE,Alu
chr9	136335345	G	A	0.00490	CACFD1	+	FALSE	(TG)n	SINE,Alu
chr5	40832551	A	T	0.00394	RPL37	-	FALSE
chr1	109818162	T	C	0.00316	CELSR2	+	FALSE
chr3	14986104	T	C	0.00621	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr2	242512159	A	G	0.00243	BOK	+	FALSE
chr1	26161108	A	C	7.55238E-06	AUNIP	-	FALSE	AluSc8	SINE,Alu
chr4	17802919	T	C	0.00857	DCAF16	-	TRUE	AluSz	SINE,Alu
chr3	48786991	T	C	0.00584	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr3	195963397	G	A	0.00037		.	FALSE
chr1	179829093	T	C	0.00056	TOR1AIP2	-	TRUE	AluJr	SINE,Alu
chr1	46828460	C	T	0.00393	NSUN4	+	FALSE
chr2	55462751	T	A	0.00613	RPS27A	+	FALSE
chr1	118502771	A	G	0.00466	WDR3,SPAG17	+,-	FALSE	(GT)n	SINE,Alu
chr7	286402	A	G	1.78989E-09	FAM20C	+	FALSE
chr1	788844	C	G	0.00406	LINC01128	+	FALSE
chr1	26611197	C	T	0.00814	UBXN11	-	FALSE
chr19	36033460	C	T	0.00622	GAPDHS,TMEM147-AS1	+,-	FALSE
chr10	75009721	T	C	1.96034E-06	DNAJC9-AS1,MRPS16	+,-	FALSE	AluY	SINE,Alu
chr1	32479707	G	A	0.00000	KHDRBS1	+	FALSE
chr1	145511796	T	G	0.00428	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	(T)n	SINE,Alu
chr6	114178851	T	C	0.00056	MARCKS	+	FALSE	(TGCCGC)n	SINE,Alu
chr22	18571474	A	G	1.16198E-07	PEX26	+	TRUE	AluSz	SINE,Alu
chr1	110276861	T	C	0.00180	GSTM3	-	FALSE	LTR77	SINE,Alu
chr4	10443062	T	G	0.00303	ZNF518B	-	FALSE
chr2	72403387	C	A	0.00486	EXOC6B	-	FALSE
chr1	211920314	T	C	0.00938	LPGAT1	-	FALSE
chr7	29960211	C	A	0.00034	SCRN1	-	FALSE
chr15	23313171	A	G	0.00257	HERC2P2	-	FALSE
chr1	184661942	T	G	0.00343	EDEM3	-	FALSE
chr1	179077613	T	C	0.00731	ABL2	-	FALSE
chr3	194789330	G	T	0.00150	XXYLT1	-	FALSE	AluJr	SINE,Alu
chr2	28002603	C	A	0.00010	MRPL33	+	FALSE
chr1	1419768	A	G	0.00250	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr2	191745653	T	G	0.00030	GLS	+	FALSE
chr1	1152309	A	T	0.00035	SDF4	-	FALSE
chr4	57326875	A	G	0.00797	PAICS	+	TRUE	AluSx1	SINE,Alu
chr1	31405694	G	A	0.00986	PUM1	-	FALSE
chr2	61369774	T	C	0.00267	LOC339803	-	TRUE	AluSx	SINE,Alu
chr3	195963395	A	G	0.00028		.	FALSE
chr12	64844149	A	G	0.00456		.	FALSE	AluJr4	SINE,Alu
chr1	45975498	A	G	0.00018	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr1	16933135	G	T	2.86961E-06	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	19499560	T	C	0.00100	UBR4	-	FALSE
chr2	9629953	C	A	0.00042	ADAM17	-	FALSE
chr1	36068237	T	C	0.00075	PSMB2	-	TRUE	AluSc	SINE,Alu
chr5	130537998	A	G	0.00380	LYRM7	+	TRUE	AluSp	SINE,Alu
chr21	40567665	G	A	0.00786	BRWD1	-	FALSE
chr2	65496144	A	G	0.00883	ACTR2	+	FALSE
chr1	38411445	G	A	0.00625	INPP5B	-	FALSE
chr1	235612219	T	A	0.00148	TBCE,B3GALNT2	+,-	FALSE
chr19	19792448	A	G	0.00416	ZNF101	+	TRUE	AluJb	SINE,Alu
chr1	36067760	T	C	0.00362	PSMB2	-	TRUE	AluSz	SINE,Alu
chr5	125961079	A	G	0.00258	PHAX	+	TRUE	AluSz	SINE,Alu
chr1	9331101	A	G	5.45177E-05	H6PD	+	FALSE	AluSx	SINE,Alu
chr6	118029818	T	G	0.00119	NUS1	+	FALSE
chr19	19745479	C	T	0.00175	GMIP	-	FALSE
chr10	45499895	G	A	0.00255	ZNF22	+	FALSE
chr1	204526631	A	G	0.00536	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	145693061	A	G	0.00158	NBPF20,NBPF10	+	TRUE	AluSz6	SINE,Alu
chr2	208619742	A	G	0.00500	CCNYL1	+	TRUE	AluJb	SINE,Alu
chr1	10518733	T	C	0.00399		.	FALSE	AluSx1	SINE,Alu
chr11	72003767	C	A	0.00297	CLPB	-	FALSE
chr7	73150511	T	C	0.00414	ABHD11	-	FALSE
chr5	96129512	A	G	0.00997	ERAP1	-	FALSE
chr1	28261658	T	G	0.00280	SMPDL3B	+	FALSE
chrX	77084007	T	C	0.00141	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	16892918	T	C	0.00590	NBPF1	-	FALSE
chr3	14986447	T	C	2.03372E-08	FGD5-AS1	-	TRUE	AluSq2	SINE,Alu
chr1	22854931	C	A	0.00238	ZBTB40	+	FALSE	A-rich	SINE,Alu
chr2	37331221	T	C	1.68149E-05		.	FALSE	AluSx1	SINE,Alu
chr8	144940792	G	C	9.20360E-05	EPPK1	-	FALSE
chr1	16889633	T	C	0.00217	NBPF1	-	TRUE
chr2	99812988	A	G	8.76694E-05	MRPL30	+	TRUE	AluJb	SINE,Alu
chr2	37328034	T	C	6.77479E-07		.	FALSE
chr4	73957426	G	T	0.00434	ANKRD17	-	FALSE
chr1	16529016	C	T	0.00024	ARHGEF19	-	FALSE
chr5	64964623	T	C	1.14652E-05	SGTB	-	TRUE	AluSx1	SINE,Alu
chr2	64859679	T	C	0.00824	SERTAD2	-	FALSE
chr1	45279813	T	C	0.00614		.	FALSE	(TCTT)n	SINE,Alu
chr2	176792531	C	T	0.00779	LNPK	-	FALSE
chr2	99208209	G	A	0.00609		.	FALSE
chr1	56961756	A	G	0.00263	PLPP3	-	FALSE
chr1	9644562	A	G	0.00337		.	FALSE	AluSx	SINE,Alu
chr1	214525603	A	G	0.00047	PTPN14	-	FALSE
chr2	70131584	G	A	0.00366	SNRNP27	+	FALSE
chr1	46076467	A	G	0.00118	NASP	+	TRUE	AluSx	SINE,Alu
chr1	214529247	T	C	0.00233	PTPN14	-	TRUE
chr1	46660295	T	C	0.00871	POMGNT1	-	FALSE
chr16	29454288	T	C	9.60363E-06	SMG1P6,BOLA2-SMG1P6	-	FALSE	Tigger4a	SINE,Alu
chr2	1636957	A	T	0.00589	PXDN	-	FALSE
chr1	9989022	A	G	0.00616	LZIC	-	FALSE	L1MB5	SINE,Alu
chr7	17384334	A	G	0.00013	AHR	+	TRUE	AluSx	SINE,Alu
chr1	28825827	A	G	0.00097	PHACTR4	+	TRUE	AluSp	SINE,Alu
chr1	16946336	G	A	0.00409	CROCCP2	-	FALSE
chr6	158364714	A	G	0.00442	SNX9	+	FALSE
chr1	27678721	A	G	0.00030	SYTL1	+	TRUE	AluSx1	SINE,Alu
chr11	65179818	C	T	0.00799	FRMD8	+	FALSE
chr2	3597974	T	C	1.93309E-05	RNASEH1	-	FALSE
chr3	15114486	T	C	3.99101E-05	RBSN	-	TRUE	AluY	SINE,Alu
chr3	10005159	A	T	0.00939	EMC3	-	FALSE	(AT)n	SINE,Alu
chr1	33148196	A	G	0.00529	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	52306075	T	C	8.71211E-05	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr1	29443675	T	C	0.00190	EPB41	+	FALSE
chr1	214524576	T	C	0.00060	PTPN14	-	TRUE	AluSg	SINE,Alu
chr1	226573364	A	G	0.00128	PARP1	-	FALSE
chr2	37230734	C	T	0.00025	HEATR5B	-	FALSE
chr1	19543973	T	C	0.00236	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr3	99516879	A	T	7.79377E-13	MIR548G	-	FALSE
chr1	45279900	T	C	0.00073		.	FALSE	(TCTT)n	SINE,Alu
chr1	16890428	T	A	1.76753E-05	NBPF1	-	FALSE
chr12	96661613	A	G	0.00183	ELK3	+	FALSE
chr8	144827207	A	T	0.00038	FAM83H-AS1	+	FALSE	ERVL-B4-int	SINE,Alu
chr1	19586458	A	G	0.00053	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	9643155	A	G	0.00015		.	FALSE	AluSx	SINE,Alu
chr1	11722350	C	A	0.00355	FBXO44	+	FALSE	OldhAT1	SINE,Alu
chr1	47746678	G	C	0.00374	STIL	-	FALSE
chr1	1344893	A	G	7.94078E-08		.	FALSE	AluSg	SINE,Alu
chr1	145500920	T	A	0.00286	NBPF20,NBPF10,LIX1L	+	FALSE
chr15	59954723	T	A	0.00043	BNIP2	-	FALSE
chr6	44417835	A	G	8.27091E-07	CDC5L	+	TRUE	AluSx	SINE,Alu
chr1	200375837	T	G	0.00490	ZNF281	-	FALSE	(T)n	SINE,Alu
chr1	59124223	G	A	0.00256	MYSM1	-	FALSE	MIR3	SINE,Alu
chr2	171849612	T	C	0.00364	TLK1	-	FALSE
chr15	49419124	T	C	1.84263E-05	COPS2	-	TRUE	MARNA	SINE,Alu
chr1	44088117	G	T	0.00731	PTPRF	+	FALSE	(T)n	SINE,Alu
chr1	23636275	G	T	0.00185	HNRNPR	-	FALSE
chr1	160966299	T	C	1.46976E-05	F11R	-	TRUE	AluSg	SINE,Alu
chr1	89570148	A	G	0.00084		.	FALSE
chr1	148556726	G	T	0.00976		.	FALSE
chr1	54691922	T	A	0.00224	SSBP3	-	FALSE
chr3	88104168	C	T	0.00919	CGGBP1	-	FALSE
chr13	24823699	G	A	0.00472	SPATA13	+	FALSE
chr1	90470915	T	A	9.94810E-07	ZNF326	+	FALSE
chr1	120267061	C	A	0.00181	PHGDH	+	FALSE
chr15	85184841	T	C	0.00016	WDR73,SCAND2P	+,-	FALSE	AluSz	SINE,Alu
chr1	85715978	C	G	0.00815	C1orf52	-	FALSE
chr2	37328008	T	C	1.98312E-07		.	FALSE
chr1	19542456	T	C	0.00186	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr2	29170763	G	A	5.21672E-05	WDR43	+	FALSE
chr3	99517479	T	C	8.06312E-05	MIR548G	-	FALSE	(TG)n	SINE,Alu
chr7	65992794	T	C	0.00820		.	FALSE	AluJr	SINE,Alu
chr1	13942884	A	C	0.00016	PDPN	+	FALSE
chr1	145688973	A	G	0.00283	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr1	62628443	A	G	0.00359	PATJ	+	TRUE	AluSg4	SINE,Alu
chr1	20976589	C	T	0.00407	PINK1,PINK1-AS	+,-	FALSE
chr1	95660019	G	T	0.00052	TMEM56-RWDD3,LOC101928118,TMEM56	+,-	FALSE
chr17	27872313	T	C	0.00226	TAOK1	+	FALSE
chr1	1169728	G	T	0.00745	B3GALT6	+	FALSE
chr1	220231263	T	C	0.00300	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr1	144931392	G	A	0.00683	NBPF20,PDE4DIP	+,-	FALSE
chr17	37005835	T	C	2.39380E-05		.	FALSE	AluSg	SINE,Alu
chr1	38002068	C	T	0.00962	SNIP1	-	FALSE
chr19	39982631	A	G	0.00316	TIMM50	+	TRUE	AluJr	SINE,Alu
chr1	169101307	C	T	0.00405	ATP1B1	+	FALSE
chr8	144940222	A	C	0.00202	EPPK1	-	FALSE
chr3	10192720	A	G	0.00110	VHL	+	TRUE	AluSx1	SINE,Alu
chr3	50150360	A	G	0.00651	RBM5	+	TRUE	AluSx	SINE,Alu
chr8	30536450	T	C	8.74573E-07	GSR	-	TRUE	AluSp	SINE,Alu
chr5	79277952	A	C	0.00041	MTX3	-	FALSE	(AC)n	SINE,Alu
chr1	220323448	C	T	0.00223	RAB3GAP2	-	FALSE
chr1	45244433	G	A	0.00060		.	FALSE
chr15	33064742	C	G	0.00215	FMN1	-	FALSE
chr1	109475427	T	C	0.00185	GPSM2,CLCC1	+,-	FALSE
chr7	22981942	G	A	0.00041	FAM126A	-	FALSE
chr1	1252468	T	C	0.00182	CPSF3L	-	TRUE	AluJr	SINE,Alu
chr2	128602974	A	T	4.23982E-05		.	FALSE	AluSp	SINE,Alu
chr1	220231338	T	C	0.00762	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr3	197682724	T	A	0.00556	IQCG	-	FALSE
chr1	16945504	C	T	0.00665	CROCCP2	-	FALSE
chr1	28826118	A	G	0.00175	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	15899549	T	C	0.00960	AGMAT	-	TRUE	AluSq2	SINE,Alu
chr2	31611143	C	T	0.00117	XDH	-	FALSE
chr2	120022385	C	T	0.00184	STEAP3	+	FALSE
chr7	6500726	A	T	0.00560	KDELR2	-	FALSE
chr16	88785189	T	C	0.00636	PIEZO1	-	TRUE	AluJr	SINE,Alu
chr5	174956493	T	A	0.00466	SFXN1	+	FALSE
chr1	40539203	A	T	0.00179	PPT1	-	FALSE
chr1	63009329	T	G	0.00155	DOCK7	-	FALSE
chr1	220231997	T	C	0.00244	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr3	88101339	T	C	0.00531	CGGBP1	-	FALSE
chr1	24861704	G	A	0.00345	RCAN3	+	FALSE
chr2	68402360	A	G	0.00309	PNO1	+	FALSE
chr1	114306374	G	A	0.00017	RSBN1	-	FALSE
chr20	36147563	T	C	0.00313	BLCAP	-	TRUE

RBP	MSI2
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR896MMU
Platform	HiSeq
Pubmed ID	32252787

MSI2 - Target Gene Network