Dataset Overview
RBP
CELF1
Knock-Method
shRNA
RBP Family
RRM_1
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR695XOD
Platform
HiSeq
Pubmed ID
32252787
CELF1 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of CELF1
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1BG
15.89
5.96
-1.19952
3.47097E-13
2.68075E-12
A1CF
30.66
14.31
-1.08599
2.68074E-37
9.02267E-36
A4GALT
0.85
1.95
1.31763
2.50786E-07
1.03636E-06
AACS
15.28
21.4
0.49349
6.55897E-08
2.92267E-07
AAED1
6.5
11.11
0.38131
0.00046
0.00114
AAGAB
8.9
14.46
0.73804
8.78119E-12
6.00554E-11
AAK1
2.42
3.92
0.74628
8.70750E-08
3.81972E-07
AAMP
118.35
71.59
-0.70614
6.33216E-17
6.70693E-16
AARS
64.38
42.8
-0.55964
6.54103E-10
3.67857E-09
AARSD1
13.3
22.62
0.86236
9.64216E-13
7.21992E-12
Showing 1 to 10 of 8,212 entries
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Function Analysis of Target Genes of CELF1
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCC2
101556543_101556610_101554169_101554225_101556853_101557088
0.00625
0.082
DataSet_01_146
View details
ABCC3
48734938_48735045_48734406_48734544_48735442_48735568
0.00778
0.07
DataSet_01_146
View details
ABCC6
16314863_16315002_16314129_16314245_16315505_16315688
0.00525
0.59
DataSet_01_146
View details
ABI2
204240779_204240855_204231599_204231767_204244930_204245107
0.00055
0.082
DataSet_01_146
View details
ACIN1
23532137_23532283_23531641_23531713_23532644_23532786
0.00877
-0.054
DataSet_01_146
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ACIN1
23540333_23540395_23538684_23538826_23540635_23540747
0.00390
0.192
DataSet_01_146
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ACOT9
23752448_23752484_23751288_23751334_23754035_23754133
0.00440
0.251
DataSet_01_146
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ACOT9
23752457_23752484_23751288_23751334_23754035_23754133
0.00910
0.202
DataSet_01_146
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ADD1
2928365_2928402_2927740_2927839_2929897_2931054
0.00188
0.061
DataSet_01_146
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ADD1
2928368_2928402_2927740_2927839_2929897_2931789
0.00279
0.067
DataSet_01_146
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Showing 1 to 10 of 199 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A2M
9254042_9254270_9256834_9256996_9253739_9253803
0.00005
-0.093
DataSet_01_146
View details
ABAT
8829555_8829666_8839857_8839955_8768421_8768568
0.00330
-0.14
DataSet_01_146
View details
ABCC3
48733192_48733369_48734062_48734188_48712217_48712342
0.00982
-0.211
DataSet_01_146
View details
ABI2
204244930_204245107_204255768_204255866_204231599_204231767
0.00811
-0.25
DataSet_01_146
View details
ACP1
272036_272150_275139_275201_271865_271939
0.00129
-0.123
DataSet_01_146
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ACTN4
39200896_39200982_39201915_39202001_39200034_39200116
0.00033
0.032
DataSet_01_146
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AFMID
76187050_76187141_76198575_76198684_76183397_76183514
0.00451
-0.153
DataSet_01_146
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AFP
74306318_74306530_74309067_74309161_74303890_74304023
0.00204
-0.072
DataSet_01_146
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AFP
74309063_74309161_74313178_74313393_74308012_74308145
0.00453
-0.069
DataSet_01_146
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AGFG1
228395806_228395926_228398264_228398474_228389477_228389631
0.00006
-0.566
DataSet_01_146
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Showing 1 to 10 of 136 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCC2
101577064_101577241_101577064_101577156_101578628_101578714
0.00431
-0.038
DataSet_01_146
View details
C12orf44
52463803_52463832_52463803_52463828_52464137_52464267
0.00856
-0.087
DataSet_01_146
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C7orf73
135357500_135357623_135357500_135357554_135358838_135359972
0.00462
0.271
DataSet_01_146
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CLDN12
90034832_90034926_90034832_90034922_90041957_90045268
0.00337
-0.121
DataSet_01_146
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CUL7
43017700_43017897_43017736_43017897_43017144_43017400
0.00016
-0.237
DataSet_01_146
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FAM96A
64367551_64367736_64367690_64367736_64364776_64365227
0.00071
0.597
DataSet_01_146
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FGFR4
176514419_176514636_176514419_176514543_176516550_176516694
0.00697
-0.244
DataSet_01_146
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FN1
216257653_216257870_216257800_216257870_216256354_216256537
0.00398
-0.019
DataSet_01_146
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HERC2P2
23311161_23311537_23311306_23311537_23310008_23310147
0.00352
-0.334
DataSet_01_146
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HPN
35532625_35533426_35532625_35532776_35540193_35540295
0.00274
0.061
DataSet_01_146
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Showing 1 to 10 of 23 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A2M
9252045_9252084_9252045_9252080_9253739_9253803
0.00533
-0.112
DataSet_01_146
View details
ABLIM1
116207638_116207785_116207638_116207779_116211382_116211430
0.00109
-0.213
DataSet_01_146
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AHCY
32880163_32880359_32880163_32880313_32881886_32881962
0.00924
0.018
DataSet_01_146
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ANO9
418887_419065_418887_418989_419581_419729
0.00714
-0.079
DataSet_01_146
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ATAD2
124382060_124382264_124382060_124382252_124383142_124383230
0.00056
-0.044
DataSet_01_146
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CNBP
128890288_128890381_128890288_128890351_128890476_128890614
0.00859
-0.046
DataSet_01_146
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CYB5R1
202935014_202935237_202935014_202935121_202935655_202935728
0.00502
-0.067
DataSet_01_146
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DDX39B
31506529_31506716_31506529_31506632_31506923_31507051
0.00215
0.017
DataSet_01_146
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EML4
42553184_42553392_42553293_42553392_42552606_42552694
0.00775
0.015
DataSet_01_146
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FKBP10
39978474_39978545_39978534_39978545_39977905_39978069
0.00745
-0.027
DataSet_01_146
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Showing 1 to 10 of 38 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AP1G2
24034814_24035369_24034814_24034910_24035024_24035369
0.00555
-0.039
DataSet_01_146
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ATF4
39916568_39917676_39916568_39916756_39917358_39917676
0.00003
0.08
DataSet_01_146
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BAX
49458804_49459090_49458804_49458856_49458943_49459090
0.00594
0.069
DataSet_01_146
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BCL2L1
30309457_30310400_30309457_30310133_30310219_30310400
0.00347
-0.109
DataSet_01_146
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CERS2
150939231_150939678_150939231_150939338_150939549_150939678
0.00791
0.018
DataSet_01_146
View details
CLK1
201721613_201722607_201721613_201721708_201722440_201722607
0.00010
0.141
DataSet_01_146
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CLN3
28503034_28503363_28503034_28503156_28503340_28503363
0.00254
-0.196
DataSet_01_146
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CPNE1
34220084_34220307_34220084_34220156_34220232_34220307
0.00255
0.021
DataSet_01_146
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CPSF3L
1247972_1248329_1247972_1248080_1248166_1248329
0.00551
-0.071
DataSet_01_146
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DDX41
176940353_176940848_176940353_176940485_176940685_176940848
0.00881
-0.031
DataSet_01_146
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Showing 1 to 10 of 37 entries
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
236702210
A
G
0.00153
LGALS8
+
FALSE
chr1
9163328
T
C
0.00150
.
FALSE
AluSp
SINE,Alu
chr1
143189076
G
A
0.00048
LOC102723769
-
FALSE
chr1
19984346
A
G
0.00071
MINOS1-NBL1,NBL1
+
FALSE
chr1
134370
T
C
0.00327
.
FALSE
AluSg
SINE,Alu
chr1
120695197
G
A
2.17750E-05
.
FALSE
chr1
1234095
C
A
0.00039
ACAP3
-
FALSE
chr1
19953124
G
A
0.00106
MINOS1,MINOS1-NBL1
+
FALSE
chr1
100489835
A
G
0.00043
SLC35A3
+
TRUE
AluSg
SINE,Alu
chr1
204526648
A
G
0.00302
MDM4
+
TRUE
AluSx
SINE,Alu
Showing 1 to 10 of 399 entries
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression