RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr3	195411498	G	A	0.00722	SDHAP2	+	FALSE
chr2	178086786	A	G	0.00305	HNRNPA3	+	FALSE
chr1	35648840	G	T	0.00049	SFPQ	-	FALSE	AluSx3	SINE,Alu
chr12	69237507	A	G	0.00889	MDM2	+	TRUE
chr1	87379498	T	G	0.00784	SEP15	-	FALSE
chr17	19091395	C	T	0.00852		.	FALSE	U3	SINE,Alu
chr1	75196073	C	T	0.00159	CRYZ	-	FALSE
chr3	98516118	T	A	0.00541	DCBLD2	-	FALSE
chr1	19428086	G	T	0.00449	UBR4	-	FALSE
chr17	57279257	A	G	0.00077	PRR11	+	TRUE	AluSq2	SINE,Alu
chr1	118502087	C	T	0.00585	WDR3,SPAG17	+,-	FALSE
chr2	101622884	C	A	0.00387	RPL31	+	FALSE
chr1	144874760	T	C	0.00267	NBPF20,PDE4DIP	+,-	FALSE
chr2	91843471	C	T	0.00105	LOC654342	-	FALSE
chr3	98518158	A	T	0.00960	DCBLD2	-	FALSE
chr12	117467580	A	G	0.00064	FBXW8	+	TRUE	AluSz	SINE,Alu
chr6	44222156	A	T	0.00856	SLC35B2	-	FALSE
chr1	3546128	A	G	0.00213	TPRG1L	+	FALSE	AluSz	SINE,Alu
chr1	36770602	T	G	0.00441	THRAP3	+	FALSE	(T)n	SINE,Alu
chr1	36068364	T	C	9.25575E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	191745641	G	C	0.00222	GLS	+	FALSE	(GCA)n	SINE,Alu
chr1	28825337	A	G	0.00313	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr3	44790781	T	C	0.00158	KIAA1143	-	TRUE	AluY	SINE,Alu
chr1	229631734	T	C	0.00611	NUP133	-	FALSE
chr8	87485483	G	C	0.00554	RMDN1	-	FALSE
chrX	77083007	T	C	0.00371	MAGT1	-	TRUE	AluSg	SINE,Alu
chr1	79126336	C	G	1.94494E-06	IFI44	+	FALSE
chr1	28661736	A	G	0.00048	MED18	+	TRUE	AluSg	SINE,Alu
chr3	47628810	T	A	0.00934	SMARCC1	-	FALSE
chr1	153617980	A	G	8.13079E-05	CHTOP	+	FALSE
chr2	223436459	A	T	1.48017E-05	FARSB	-	FALSE
chr7	64435685	A	T	0.00239	ZNF117	-	FALSE
chr1	220231338	T	C	0.00762	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr2	187544230	T	A	0.00930	ITGAV	+	FALSE
chr16	10625406	T	C	1.26372E-11	EMP2	-	TRUE	AluSx	SINE,Alu
chr11	8709240	A	G	0.00431	RPL27A	+	TRUE	AluYk2	SINE,Alu
chr1	204525713	A	G	0.00501	MDM4	+	TRUE	AluSz	SINE,Alu
chr1	145324363	G	C	0.00895	NBPF20,NBPF10	+	FALSE
chr11	76637680	G	A	0.00011	ACER3	+	FALSE
chr1	207247478	C	T	0.00995	PFKFB2	+	FALSE	MER5B	SINE,Alu
chr7	128143512	A	G	0.00984		.	FALSE	AluJr4	SINE,Alu
chr2	101622888	T	A	7.56266E-05	RPL31	+	FALSE
chr1	204520455	T	C	0.00478	MDM4	+	FALSE	AluJb	SINE,Alu
chr2	55516936	A	T	0.00011	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr1	206516261	C	T	0.00228	SRGAP2	+	FALSE
chr9	96438974	C	G	0.00303	PHF2	+	FALSE	(CTCCAC)n	SINE,Alu
chr7	2290637	C	T	0.00956	NUDT1	+	FALSE
chr5	140594467	G	A	0.00045	PCDHB13	+	FALSE
chr1	160231113	C	T	0.00204	DCAF8	-	FALSE
chr1	27434251	G	A	0.00504	SLC9A1	-	FALSE
chr8	12884103	T	C	0.00033	KIAA1456	+	FALSE	MIR	SINE,Alu
chr3	119543179	C	A	0.00992	GSK3B	-	FALSE	(CA)n	SINE,Alu
chr2	10198113	C	A	0.00893	CYS1	-	FALSE
chr3	183534170	C	T	0.00090	MAP6D1	-	FALSE
chr15	90815820	A	G	0.00171		.	FALSE	FRAM	SINE,Alu
chr1	114940210	T	G	0.00028	TRIM33	-	FALSE	(T)n	SINE,Alu
chr2	32535797	A	G	0.00910		.	FALSE	AluJb	SINE,Alu
chr1	214524576	T	C	0.00408	PTPN14	-	TRUE	AluSg	SINE,Alu
chr3	188602081	A	C	7.06828E-05	LPP	+	FALSE	MIRc	SINE,Alu
chr1	36067677	T	C	5.01583E-07	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	31905887	A	C	0.00221	SERINC2	+	FALSE
chr1	120839682	A	G	0.00764	FAM72B	+	FALSE
chr7	17384358	A	G	7.93091E-07	AHR	+	TRUE	AluSx	SINE,Alu
chr11	68523337	T	C	0.00016	CPT1A	-	TRUE	AluSq	SINE,Alu
chr1	33086834	T	C	0.00251	ZBTB8OS	-	TRUE	AluY	SINE,Alu
chr1	150937959	A	G	3.24660E-05	CERS2	-	FALSE	G-rich	SINE,Alu
chr6	8014786	T	C	0.00086	BLOC1S5-TXNDC5,BLOC1S5,EEF1E1-BLOC1S5	-	TRUE	AluSz	SINE,Alu
chr6	90344221	T	C	0.00809	LYRM2	-	TRUE	AluJo	SINE,Alu
chr1	117617705	A	G	0.00475	TTF2	+	FALSE
chr1	6282400	T	C	0.00601	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	36068370	T	C	0.00067	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	113672569	A	G	0.00742		.	FALSE	AluJb	SINE,Alu
chr1	16909216	G	C	0.00232	NBPF1	-	FALSE
chr2	37329307	T	C	0.00137		.	FALSE	AluJr4	SINE,Alu
chr1	9160900	T	C	0.00893		.	FALSE	AluJb	SINE,Alu
chr1	36770064	T	C	0.00086	THRAP3	+	FALSE	(T)n	SINE,Alu
chr2	37327670	T	C	0.00021		.	FALSE
chr1	33148696	A	G	0.00363	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr3	40577752	A	G	0.00111	ZNF621	+	TRUE	AluSz	SINE,Alu
chr8	141461185	A	G	0.00793	TRAPPC9	-	FALSE
chr1	144053661	T	G	0.00232		.	FALSE
chr19	65146	G	A	0.00761	WASH5P	-	FALSE
chr1	33148210	A	G	0.00114	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	45975345	A	G	0.00071	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr1	36067925	T	C	4.53272E-07	PSMB2	-	TRUE	AluSz	SINE,Alu
chr4	177252326	A	G	0.00554	SPCS3	+	TRUE
chr1	16952377	C	T	0.00056	CROCCP2	-	FALSE
chr1	145281408	C	T	0.00087	NBPF20,NOTCH2NL	+	FALSE
chr1	37958451	C	G	0.00882	MEAF6	-	FALSE	MER5B	SINE,Alu
chr2	24224000	A	G	0.00464		.	FALSE	AluSp	SINE,Alu
chr1	52520892	A	C	0.00292	TXNDC12	-	FALSE
chr4	36121334	C	G	0.00057	ARAP2	-	FALSE
chr1	92862879	A	G	3.90108E-09		.	FALSE	AluJr	SINE,Alu
chr1	26161107	A	T	0.00022	AUNIP	-	FALSE	AluSc8	SINE,Alu
chr1	16913612	G	A	0.00145	NBPF1	-	FALSE
chr4	56295161	T	A	0.00075	CLOCK	-	FALSE	(T)n	SINE,Alu
chr1	9324213	C	T	0.00063	H6PD	+	FALSE
chr5	96129512	A	G	0.00997	ERAP1	-	FALSE
chr12	10311410	A	G	0.00909	OLR1	-	FALSE
chr1	120455441	A	G	0.00872	NOTCH2	-	FALSE
chr19	58374130	C	T	0.00124	ZNF587	+	FALSE
chr1	138266	C	T	7.30419E-05	LOC729737	-	FALSE
chr1	148753279	G	T	0.00358		.	FALSE
chr1	6282426	T	C	0.00043	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	168218573	A	G	0.00202		.	FALSE	AluSz	SINE,Alu
chr2	216903621	T	C	0.00611	PECR	-	TRUE	AluSx3	SINE,Alu
chr5	53841241	T	A	0.00179	SNX18	+	FALSE
chr1	10517313	T	C	0.00742		.	FALSE	AluJr	SINE,Alu
chr16	74698535	T	C	0.00607	RFWD3	-	TRUE	AluSx3	SINE,Alu
chr3	14986110	T	C	0.00632	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr17	49042395	T	C	0.00326	SPAG9	-	TRUE	AluJb	SINE,Alu
chr2	103333656	T	A	0.00488	MFSD9	-	FALSE	AluYm1	SINE,Alu
chr1	33139178	A	G	0.00108	RBBP4	+	TRUE	AluSx3	SINE,Alu
chr1	40538317	C	A	0.00178	CAP1	+	FALSE
chr1	16891365	G	A	1.42078E-05	NBPF1	-	FALSE
chr2	37330391	T	C	0.00134		.	FALSE	AluSq2	SINE,Alu
chr1	3545189	T	G	0.00027	TPRG1L	+	FALSE
chr1	45976112	A	G	1.14998E-06	MMACHC	+	TRUE	AluJr	SINE,Alu
chr4	155457601	T	C	0.00423	PLRG1	-	FALSE
chr12	64842925	A	G	0.00345		.	FALSE	AluSz	SINE,Alu
chr1	11734730	C	T	7.77156E-16	MAD2L2	-	FALSE
chr3	93846831	G	A	0.00547		.	FALSE	AluSq2	SINE,Alu
chr8	97506373	C	G	0.00579	SDC2	+	FALSE	(CCCCGAG)n	SINE,Alu
chr3	170893070	G	A	0.00071	TNIK	-	FALSE
chr1	2161135	A	G	0.00028	SKI	+	FALSE
chr6	150047370	T	C	0.00154	NUP43	-	TRUE	AluSc	SINE,Alu
chr2	37327666	T	C	3.66834E-09		.	FALSE
chr3	181430508	G	A	3.55222E-06	SOX2-OT,SOX2	+	FALSE
chr1	207247477	T	C	2.68116E-05	PFKFB2	+	FALSE	MER5B	SINE,Alu
chr12	56510698	C	G	0.00019	RPL41	+	FALSE
chr6	29910586	G	A	1.69263E-05		.	FALSE
chr1	109746728	A	G	0.00171	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr2	85547772	G	C	0.00871	TGOLN2	-	FALSE
chr1	160990906	G	A	0.00270	F11R	-	FALSE
chr5	6668842	C	T	4.46208E-05	SRD5A1	+	FALSE
chr3	86991597	T	G	0.00481	VGLL3	-	FALSE
chr6	3021352	T	C	0.00082	HTATSF1P2	-	TRUE	AluJr4	SINE,Alu
chr12	92537721	A	T	0.00057	BTG1	-	FALSE
chr1	33149508	A	G	0.00107	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr4	140310370	T	C	0.00335	NAA15	+	FALSE	(T)n	SINE,Alu
chr1	16893691	C	A	0.00764	NBPF1	-	FALSE
chr2	91805938	A	G	0.00000		.	FALSE	MLT1H1	SINE,Alu
chr1	160967843	T	C	0.00247	F11R	-	TRUE	AluSp	SINE,Alu
chr1	21808159	G	A	9.34000E-05	NBPF3	+	FALSE
chr6	72012435	A	G	0.00723	OGFRL1	+	FALSE	AluSg	SINE,Alu
chr1	32661578	C	T	0.00694	TXLNA	+	FALSE	(T)n	SINE,Alu
chr19	21367088	A	G	0.00018	ZNF431	+	TRUE	AluSc	SINE,Alu
chr1	36533368	A	G	0.00635		.	FALSE	AluSx	SINE,Alu
chr1	90478690	A	C	0.00035	ZNF326	+	FALSE
chrX	16781186	A	G	0.00220		.	FALSE	AluJo	SINE,Alu
chr1	33148740	A	G	0.00210	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	44818526	C	G	0.00326	ERI3	-	FALSE
chr1	109181308	T	A	0.00756	FAM102B	+	FALSE
chr1	53289759	A	G	0.00383	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr8	143763622	C	T	0.00470	PSCA	+	FALSE
chr2	112227513	T	C	0.00018	MIR4435-2HG	-	FALSE
chr1	214529742	T	C	6.22071E-05	PTPN14	-	TRUE
chr1	45280109	A	G	0.00251		.	FALSE	AluYk3	SINE,Alu
chr1	3546269	C	A	0.00260	TPRG1L	+	FALSE	AluSz	SINE,Alu
chr1	38327586	C	T	0.00198	INPP5B	-	FALSE	AluSx3	SINE,Alu
chr5	175803244	A	G	0.00245		.	FALSE	AluSc8	SINE,Alu
chr1	16890130	A	C	0.00412	NBPF1	-	FALSE
chr6	34252328	T	A	0.00062		.	FALSE	(T)n	SINE,Alu
chr7	137561076	A	G	0.00488	CREB3L2	-	FALSE
chr1	36068295	T	C	0.00076	PSMB2	-	TRUE	AluSc	SINE,Alu
chr3	14986447	T	C	2.03372E-08	FGD5-AS1	-	TRUE	AluSq2	SINE,Alu
chr19	36575645	G	A	0.00590	WDR62	+	FALSE
chr1	75230606	C	T	0.00077	TYW3	+	FALSE
chr3	10005650	C	T	0.00698	EMC3	-	FALSE
chr2	25044957	G	A	0.00651	CENPO,ADCY3	+,-	FALSE
chr16	75479470	T	C	3.73920E-07	TMEM170A	-	TRUE	AluJb	SINE,Alu
chr7	91502407	C	G	0.00183	MTERF1	-	FALSE
chr1	16932912	T	C	0.00808	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr7	17384440	A	G	0.00271	AHR	+	TRUE	AluSx	SINE,Alu
chr1	64114301	T	C	0.00955	PGM1	+	FALSE
chr3	14986110	T	C	1.11022E-16	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr17	56049824	T	C	5.91767E-06	VEZF1	-	TRUE
chr1	16889423	G	C	6.92544E-07	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr1	10521130	T	C	0.00807	DFFA	-	TRUE	AluY	SINE,Alu
chr1	229586611	T	C	0.00794	NUP133	-	TRUE	AluSz	SINE,Alu
chr20	35869801	G	A	0.00150	RPN2	+	FALSE
chr1	40537924	G	A	0.00245	CAP1	+	FALSE	(A)n	SINE,Alu
chr3	169490779	G	A	0.00147		.	FALSE
chr4	84525973	C	G	0.00148	GPAT3	+	FALSE
chr6	52860743	T	G	1.89710E-05		.	FALSE	7SK	SINE,Alu
chr2	179969921	A	T	0.00203	SESTD1	-	FALSE
chr14	53242630	T	C	0.00056	GNPNAT1	-	TRUE	AluJr	SINE,Alu
chr3	48787633	T	C	0.00287	PRKAR2A	-	TRUE	AluSp	SINE,Alu
chr3	149459341	A	G	0.00042	COMMD2	-	FALSE
chr3	15113799	T	C	0.00200	RBSN	-	TRUE	AluSz6	SINE,Alu
chr11	94863483	C	T	0.00501	ENDOD1	+	FALSE
chr4	2940347	T	C	1.36349E-05	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr2	153512503	C	T	0.00082	PRPF40A	-	FALSE
chr1	1421531	C	A	0.00409	ATAD3B	+	FALSE
chr3	160213318	T	G	0.00215	KPNA4	-	FALSE
chr2	132481529	C	T	0.00028	C2orf27A	+	FALSE
chr1	171751051	A	G	0.00522	METTL13	+	FALSE
chr2	206861649	T	A	0.00066	INO80D	-	FALSE
chr3	40503559	C	G	0.00018	RPL14	+	FALSE
chr1	205687354	T	C	0.00012	NUCKS1	-	FALSE	(T)n	SINE,Alu
chr8	30536151	T	C	5.90006E-09	GSR	-	TRUE	AluJr	SINE,Alu
chr1	47843356	A	T	0.00556	CMPK1	+	FALSE
chr5	37290435	T	C	8.22232E-07		.	FALSE	AluSz	SINE,Alu
chr1	62673225	G	A	0.00039	L1TD1	+	FALSE	L1MEd	SINE,Alu
chr1	46032311	A	G	0.00362	AKR1A1	+	FALSE
chr1	144932200	G	T	0.00492	NBPF20,PDE4DIP	+,-	FALSE
chr2	172412829	T	A	0.00477	CYBRD1	+	FALSE
chr1	6282400	T	C	0.00118	ICMT	-	TRUE	AluSz	SINE,Alu
chr6	32148031	A	G	1.10299E-06		.	FALSE
chr1	142688707	A	C	0.00504		.	FALSE
chr1	28662053	G	A	0.00158	MED18	+	FALSE	AluSq2	SINE,Alu
chr8	11700676	T	C	0.00534	CTSB	-	TRUE	AluSg	SINE,Alu
chr1	85331816	A	G	0.00921	LPAR3	-	FALSE
chr1	114438951	A	G	0.00017	AP4B1-AS1,AP4B1	+,-	FALSE
chr3	194362721	G	A	5.25740E-07	LSG1	-	FALSE
chr1	16932968	G	A	0.00074	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr3	46007823	G	T	6.71801E-06	FYCO1	-	FALSE
chr1	39500293	T	A	0.00552	NDUFS5	+	FALSE
chr9	111779229	T	C	0.00269	TMEM245	-	FALSE
chr1	95658344	G	A	0.00100	TMEM56-RWDD3,LOC101928118,TMEM56	+,-	FALSE
chr1	24786	G	A	0.00285	WASH7P	-	FALSE
chr6	134492482	A	C	0.00108	SGK1	-	FALSE
chr3	115528809	T	G	0.00087	LSAMP	-	FALSE
chr19	39669600	A	G	0.00619	PAK4	+	FALSE	(TG)n	SINE,Alu
chr2	37328097	T	C	0.00091		.	FALSE
chr1	45976723	T	C	0.00239	MMACHC,PRDX1	+,-	FALSE
chr1	26143726	G	T	0.00128	SEPN1	+	FALSE	AluSx	SINE,Alu
chr6	29911970	G	A	0.00284		.	FALSE
chr1	10518831	T	C	0.00410		.	FALSE	AluSx1	SINE,Alu
chr11	76835290	C	T	0.00011	CAPN5	+	FALSE
chr1	10041432	A	G	0.00132	NMNAT1	+	TRUE	AluYj4	SINE,Alu
chr2	31557839	G	T	0.00145	XDH	-	FALSE	AluJr	SINE,Alu
chr1	11181327	C	T	0.00525	MTOR	-	FALSE
chr20	35409839	T	C	0.00556	SOGA1	-	TRUE	AluSx	SINE,Alu
chr1	33148367	C	G	0.00020	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr3	44692564	C	G	0.00182	ZNF35	+	FALSE
chr1	1647871	T	C	7.46571E-06	CDK11B,CDK11A	-	FALSE
chr1	24999468	G	T	0.00075	SRRM1	+	FALSE	(T)n	SINE,Alu
chr1	100490274	A	G	0.00234	SLC35A3	+	TRUE	AluSc5	SINE,Alu
chr1	16524869	T	C	0.00164	ARHGEF19	-	FALSE
chr1	201846634	C	A	0.00852	IPO9	+	FALSE	(CA)n	SINE,Alu
chr1	142688506	T	C	0.00337		.	FALSE
chr11	82686151	T	C	0.00404	RAB30	-	FALSE
chr1	24022437	A	G	0.00342	RPL11	+	FALSE
chr1	145512930	A	G	5.47366E-06	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr7	44917291	T	C	0.00019	PURB	-	TRUE	AluSz	SINE,Alu
chr3	99886662	G	A	0.00011	CMSS1	+	FALSE
chr12	133298349	A	G	0.00000	PGAM5	+	TRUE	AluSp	SINE,Alu
chr1	38280611	G	T	0.00670	MTF1	-	FALSE	(T)n	SINE,Alu
chr11	86646405	C	A	9.05139E-05	PRSS23	+	FALSE	L2b	SINE,Alu
chr7	35737649	G	A	0.00566	LOC101930085	+	FALSE	AluSz	SINE,Alu

RBP	GRSF1
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR835RMN
Platform	HiSeq
Pubmed ID	32252787

GRSF1 - Target Gene Network