Dataset Overview
RBPILF2
Knock-MethodCRISPRi
RBP FamilyDZF
Biosample NameK562
Tissue TypeHaematopoietic_and_lymphoid_tissue
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR073QLQ
PlatformHiSeq
Pubmed ID32252787

ILF2 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of ILF2
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of ILF2


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr314986110TC0.00051FGD5-AS1-TRUEFLAM_CSINE,Alu
chr1148558269AG0.00538NBPF15+FALSEAluJbSINE,Alu
chr830536151TC5.90006E-09GSR-TRUEAluJrSINE,Alu
chr236776054CT0.00028CRIM1+FALSE
chr417802955TC0.00071DCAF16-FALSEAluSzSINE,Alu
chr1209796329TA0.00136LAMB3-FALSE
chr120977913TG0.00201PINK1,PINK1-AS+,-FALSE
chrX135300092TC0.00075MAP7D3-TRUEAluSzSINE,Alu
chr2109401281TG0.00116RANBP2+FALSE
chr1168220341AG0.00179.FALSEAluSz6SINE,Alu
chr136068278TC0.00068PSMB2-TRUEAluScSINE,Alu
chr1269237053AG0.00331MDM2+TRUE
chr1193054576TC0.00068TROVE2+FALSE(ATTTT)nSINE,Alu
chr12125512444AG4.63106E-05.FALSEAluYSINE,Alu
chr310192825AG0.00042VHL+TRUEAluSx1SINE,Alu
chr23609064GA0.00194RNASEH1-AS1+FALSEMER33SINE,Alu
chr119543352TC0.00086LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr147184569GC0.00509EFCAB14-FALSE
chr119543364TC0.00447LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr3169490779GA0.00147.FALSE
chr152882970AG0.00533PRPF38A+FALSE
chr848890109AG0.00750MCM4+TRUEAluJbSINE,Alu
chr315114493TC2.42944E-10RBSN-TRUEAluYSINE,Alu
chr159142713TC0.00246MYSM1-FALSE
chr1469254646TC0.00181ZFP36L1-FALSE
chr1164473TC0.00152.FALSEAluSq2SINE,Alu
chr128864731AG0.00477RCC1+FALSE
chr144171143CA0.00118KDM4A-AS1,KDM4A+,-FALSE
chr1213069783AG0.00600FLVCR1+FALSE
chr1214813487AG0.00027CENPF+FALSE
chr349714225TC0.00023APEH+FALSE
chr224223256AG0.00711UBXN2A+TRUEAluScSINE,Alu
chr1165877666TC0.00327UCK2+FALSE(T)nSINE,Alu
chr7137561076AG0.00488CREB3L2-FALSE
chr111084103TA0.00162TARDBP+FALSE
chr56668842CT4.46208E-05SRD5A1+FALSE
chr126226610CT0.00955STMN1-FALSE
chr1242251696CT0.00335PLD5-FALSE
chr1121133779CG0.00567SRGAP2-AS1,SRGAP2B,SRGAP2C+,-FALSEL1MB4SINE,Alu
chr111347150CA0.00016UBIAD1+FALSE
chr162628606AG0.00027PATJ+TRUEAluSg4SINE,Alu
chr137958451CG0.00882MEAF6-FALSEMER5BSINE,Alu
chr1148010972AG0.00068NBPF8-FALSE
chr2183817957TA0.00031NCKAP1-FALSE
chr2204298783AC0.00179RAPH1-FALSE(AT)nSINE,Alu
chr1610623543TC0.00025EMP2-TRUEAluSpSINE,Alu
chr264069566AG0.00075UGP2+FALSE
chr116889866GA0.00995NBPF1-FALSE
chr556559238TC0.00149GPBP1+FALSE
chr595222277CT0.00599ELL2-FALSE
chr136068369TC0.00511PSMB2-TRUEAluScSINE,Alu
chr344791536TC4.11776E-05KIAA1143-TRUEAluJrSINE,Alu
chr119586519AG0.00239MRTO4+TRUEAluSzSINE,Alu
chr642855957AG0.00107RPL7L1+TRUEAluSzSINE,Alu
chr237431604AG0.00876CEBPZOS,CEBPZ+,-FALSEAluScSINE,Alu
chr822995145TC3.53807E-06TNFRSF10D-FALSE
chr1610624967TC0.00013EMP2-TRUEAluSx3SINE,Alu
chr110517635TC0.00553.FALSEAluSx1SINE,Alu
chr1236702210AG0.00153LGALS8+FALSE
chr1212587320TC0.00023TMEM206-FALSE
chr274442407AG0.00384MTHFD2+FALSE
chr471682341TC0.00584GRSF1-TRUEAluSz6SINE,Alu
chr1214527252GA0.00181PTPN14-FALSEMADE2SINE,Alu
chr594050487TA0.00380MCTP1-FALSE
chr2135208352TG0.00259MGAT5+FALSE
chr357551513AG0.00037PDE12+TRUEAluScSINE,Alu
chr613790931TC0.00122MCUR1-TRUEAluSx1SINE,Alu
chr2161130868AC0.00297RBMS1-FALSE
chr119411087CT0.00226UBR4-FALSE
chr7100031495CT0.00475MEPCE+FALSE
chr110043363AG0.00509NMNAT1+TRUEAluSx3SINE,Alu
chr116889466AC0.00665NBPF1-FALSEL1MC4SINE,Alu
chr3197612267AG0.00341.FALSEAluSpSINE,Alu
chr16283260TC0.00071ICMT-TRUEAluSx3SINE,Alu
chr159120961GA9.55369E-05MYSM1-FALSE
chr138002251GC0.00624SNIP1-FALSE
chr1145273345TC0.00640NBPF20,NOTCH2NL+FALSE
chr122161275GA0.00600HSPG2-FALSE
chr136067838TC1.55029E-07PSMB2-TRUEAluSzSINE,Alu
chr111785234AG0.00339.FALSEAluJrSINE,Alu
chr146075715AG0.00058NASP+TRUEAluSx4SINE,Alu
chr1139233CA0.00653LOC729737-FALSE
chr9132268957AG0.00316LINC00963+TRUEAluYf1SINE,Alu
chr174672926TA0.00159FPGT-TNNI3K,FPGT+FALSEKanga1dSINE,Alu
chr255516903GA3.31807E-05CCDC88A-FALSE(GA)nSINE,Alu
chr194351062TA0.00676GCLM-FALSE
chr170696606CA0.00362SRSF11+FALSE
chr1146650289CT0.00736PDIA3P1+FALSE
chr2231375020TA0.00990TUG1+FALSE
chr1228520973CG0.00875OBSCN+FALSE
chr1015120278TC0.00018ACBD7-TRUEL1PA7SINE,Alu
chr324019989CT0.00339NR1D2+FALSE
chr722765456GT5.19964E-05LOC541472-FALSE
chr564023977CT0.00340SREK1IP1-FALSE(TTTTTTT)nSINE,Alu
chr1100654789TC0.00014DBT-TRUEAluSzSINE,Alu
chr157002773AG0.00162PLPP3-FALSE
chr3196556141GA0.00534PAK2+FALSE
chr1175126524TC0.00901KIAA0040-FALSE
chr1220231276TC0.00937RNU5F-1,BPNT1+,-FALSEAluYSINE,Alu
chr642856917AG0.00280RPL7L1+TRUEAluSpSINE,Alu
chr775958147TA0.00917YWHAG-FALSE
chr1145512024AG0.00836NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr136770607TC0.00171THRAP3+FALSE(T)nSINE,Alu
chr116890176AC0.00753NBPF1-FALSE
chr261152521GA0.00134REL+FALSE
chr2029631627TC0.00040FRG1BP+FALSE
chr1118068558GA0.00644.FALSE
chr1155695968AG0.00439DAP3+TRUEAluSpSINE,Alu
chr1179044206AG0.00015FAM20B+TRUEAluSxSINE,Alu
chr1204526631AG0.00568MDM4+TRUEAluSxSINE,Alu
chr256150864CT0.00615EFEMP1-FALSE
chr146828460CT0.00101NSUN4+FALSE
chr110518875TC0.00127.FALSEAluSx1SINE,Alu
chr42940430TC2.47251E-05NOP14-AS1,NOP14+,-FALSEAluJoSINE,Alu
chr133150642AG0.00316SYNC,RBBP4+,-FALSEAluJoSINE,Alu
chr13729217TC0.00030CEP104-TRUEAluSx3SINE,Alu
chr128661657AG0.00910MED18+TRUEAluSgSINE,Alu
chr366024384GC0.00096MAGI1-FALSE
chr13114204255AG0.00134TMCO3+FALSE
chr2130900880CT0.00044CCDC74B-FALSE
chr119543457TC0.00569LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr194654601AG0.00016TNFAIP8L1+TRUEAluJbSINE,Alu
chr345721990AG0.00779LIMD1,LIMD1-AS1+,-FALSEAluJbSINE,Alu
chr165692498TC0.00356AK4+FALSE(T)nSINE,Alu
chr1942376872AG0.00647.FALSEAluSpSINE,Alu
chr315113885TC0.00094RBSN-TRUEAluSz6SINE,Alu
chr581571875AT0.00072RPS23-FALSE
chr1203766875TC3.09664E-07ZC3H11A,ZBED6+FALSE
chr357548976AG0.00132PDE12+TRUEFRAMSINE,Alu
chr1155106550AG0.00015EFNA1+FALSE
chr1160967848TC0.00200F11R-TRUEAluSpSINE,Alu
chr7143003523TG2.48474E-05CASP2+FALSEAluYSINE,Alu
chr1109475629AG0.00310GPSM2,CLCC1+,-FALSEAluJoSINE,Alu
chr145976220AG0.00031MMACHC+TRUE
chr1154554951AG0.00554ADAR-FALSE
chr717384395AG1.20082E-06AHR+TRUEAluSxSINE,Alu
chr1589803950CT0.00698FANCI+FALSE
chr125717365CG0.00229RHCE-FALSE
chr3107765249TC0.00156CD47-FALSE
chr2239970718CA0.00244HDAC4-FALSE(AAAAC)nSINE,Alu
chr116889624TC3.50465E-05NBPF1-TRUE
chr136067821TC1.12344E-05PSMB2-TRUEAluSzSINE,Alu
chr1224573601CT0.00587WDR26-FALSE
chr286249930TC0.00054LOC90784-TRUEAluJrSINE,Alu
chr2109401285GA0.00087RANBP2+FALSE
chr11595540TC0.00048CDK11B,SLC35E2B-TRUEAluJrSINE,Alu
chr369154081GA0.00999ARL6IP5+FALSE
chr1298942690AG3.03569E-06TMPO+TRUEAluScSINE,Alu
chr1160967755CT0.00563F11R-FALSE(T)nSINE,Alu
chr333907915AG3.74419E-09PDCD6IP+FALSE
chr2134728095AG8.47848E-05IFNAR1+TRUEAluScSINE,Alu
chr247398328GA0.00434CALM2-FALSE
chr16282401TC0.00665ICMT-TRUEAluSzSINE,Alu
chr146032974TC0.00141AKR1A1+FALSE
chr457326873AG0.00342PAICS+TRUEAluSx1SINE,Alu
chr1145500933CT0.00982NBPF20,NBPF10,LIX1L+FALSE
chr121810693AG0.00370NBPF3+FALSEL1MC4SINE,Alu
chr674303543TC0.00031SLC17A5-TRUEAluJrSINE,Alu
chr145452227GC0.00256EIF2B3-FALSE
chr1145209366AG0.00019NBPF20,NOTCH2NL+FALSE
chr237331116TC0.00481.FALSEAluSx1SINE,Alu
chr7129472333CT0.00670UBE2H-FALSE(CA)nSINE,Alu
chr119543456TC0.00451LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr1761502460TA0.00161TANC2+FALSE
chr133148736AG0.00525SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr488060832TC0.00531AFF1+FALSE
chr1109351501AG0.00921STXBP3+FALSE
chr128858860CT0.00213RCC1+FALSE
chr1168220535AG0.00665.FALSEAluSz6SINE,Alu
chr4165998694TC0.00041TMEM192-TRUEAluSgSINE,Alu
chr135899684CT0.00051KIAA0319L-FALSEAluSc8SINE,Alu
chrX131339006TA0.00405RAP2C-FALSE
chr122852880GC0.00247ZBTB40+FALSE
chr136644564CT1.56500E-06MAP7D1+FALSE
chr122854702CT5.42952E-11ZBTB40+FALSE
chr136068052GT1.69686E-12PSMB2-FALSEL1ME4bSINE,Alu
chr1148004548TC0.00220NBPF8-FALSE
chr1230979247GA0.00137C1orf198-FALSE
chr121100862CA0.00012HP1BP3-FALSE(AC)nSINE,Alu
chr674304013TC3.72993E-06SLC17A5-TRUEAluSx3SINE,Alu
chr63021352TC0.00082HTATSF1P2-TRUEAluJr4SINE,Alu
chr16282324TC0.00013ICMT-TRUEAluSzSINE,Alu
chr189648082GA0.00074GBP4-FALSELTR2BSINE,Alu
chr1350102992TC0.00956SETDB2-PHF11,PHF11+FALSEL2aSINE,Alu
chr5176883676AT0.00456DBN1-FALSE(A)nSINE,Alu
chr1220231263TC0.00300RNU5F-1,BPNT1+,-FALSEAluYSINE,Alu
chr3178741082AC0.00145ZMAT3-FALSE
chr1145513098AG0.00514NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr1109856085GA0.00684SORT1-FALSE
chr2128602366TC0.00236.FALSEAluSq2SINE,Alu
chr357743246GA0.00221SLMAP+FALSE
chr115668319GA0.00489FHAD1+FALSE
chr29629293TG0.00426ADAM17-FALSE(TGT)nSINE,Alu
chr2201774393TC0.00971.FALSEAluSzSINE,Alu
chr358292300CT0.00740RPP14+FALSE
chr187213190AC0.00054SH3GLB1+FALSE
chr2206858904CT0.00783INO80D-FALSE
chr116913612GA0.00145NBPF1-FALSE
chr473922981TC0.00491COX18-TRUEAluSzSINE,Alu
chr158999651TG0.00980OMA1-FALSE
chr156961756AG0.00263PLPP3-FALSE
chr16283306TC0.00505ICMT-TRUEAluSx3SINE,Alu
chr2102484488AG0.00192MAP4K4+FALSE
chr136067838TC2.61513E-05PSMB2-TRUEAluSzSINE,Alu
chr1475203097AG1.28940E-05FCF1+TRUEAluSxSINE,Alu
chr624720534TC0.00053.FALSE
chr5175816759TA0.00018.FALSE
chr1150937961AC0.00060CERS2-FALSEG-richSINE,Alu
chr1629707549AG0.00025QPRT+TRUEAluJrSINE,Alu
chr128662254AG0.00505MED18+TRUEAluSq2SINE,Alu
chr1145512073AG0.00505NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr119586458AG0.00333MRTO4+TRUEAluSzSINE,Alu
chr1475202412AG5.03546E-10FCF1+TRUEAluScSINE,Alu
chr110519888TC0.00666.FALSEAluJrSINE,Alu
chr116929327CT0.00304NBPF1-FALSEERVL-E-intSINE,Alu
chr1101443701AG0.00749SLC30A7+FALSE
chr153289860AG0.00119ZYG11B+TRUEFRAMSINE,Alu
chr237328016TC0.00473.FALSE
chr9132575828AT0.00445TOR1A-FALSE
chr1610623544TC2.29348E-06EMP2-TRUEAluSpSINE,Alu
chr1116609833GA0.00773SLC22A15+FALSE
chr43213832GA0.00012HTT+FALSE
chr1256510698CG0.00019RPL41+FALSE
chr1179042482AG0.00301FAM20B+TRUEAluSx1SINE,Alu
chr1757279167AG6.96573E-05PRR11+TRUEAluSq2SINE,Alu
chr220401855GA0.00107SDC1-FALSE
chrX77083007TC0.00371MAGT1-TRUEAluSgSINE,Alu
chr1541590839AG0.00344OIP5-AS1+TRUEAluSx1SINE,Alu
chr1114306369AT0.00341RSBN1-FALSE
chr11344998AG5.29904E-05.FALSEAluSgSINE,Alu
chr299812447AG0.00587MRPL30+TRUEAluSxSINE,Alu
chr1161930908GA0.00083ATF6+FALSE
chr133149486AG0.00874SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr7299940GA8.49279E-08FAM20C+FALSE
chr1225684742TC0.00518ENAH-FALSE
chr3195243023AC0.00729PPP1R2-FALSE
chr285837797TC0.00097USP39,C2orf68+,-FALSEAluSxSINE,Alu
chr143391823CT0.00718SLC2A1-FALSE
chr286249961TC0.00262LOC90784-TRUEAluJrSINE,Alu
chr3156258230TC0.00176SSR3-TRUEAluYk3SINE,Alu
chr7130629624TC0.00435LINC-PINT-TRUE
chr3172117459CA0.00791FNDC3B+FALSE
chr9100777784TA0.00080ANP32B+FALSE
chr127992799TA0.00014IFI6-FALSEFAMSINE,Alu
chr352237970CT0.00017ALAS1+FALSE
chr116932428CG0.00017NBPF1-FALSEL1MC2SINE,Alu
chr717384818AG0.00241AHR+TRUEAluScSINE,Alu
chr1165728775CT5.75449E-06TMCO1-FALSE
chr299812289AG0.00040MRPL30+TRUEAluSxSINE,Alu
chr11595586TC0.00108CDK11B,SLC35E2B-TRUEAluJrSINE,Alu
chr576371820AG0.00162.FALSE
chr127074517CT0.00369PHB2-FALSE
chr124934334AG0.00031NCMAP+TRUEAluSz6SINE,Alu
chr1235383188AG0.00531ARID4B-FALSE
chr1120163248GA4.97770E-06ZNF697-FALSE
chr133148210AG0.00114SYNC,RBBP4+,-FALSEAluSgSINE,Alu
chr237328097TC3.71887E-07.FALSE
chr339452772AG0.00127RPSA+FALSE
chr136068281TC0.00331PSMB2-TRUEAluScSINE,Alu
chr9124094999GT0.00764GSN+FALSE(TG)nSINE,Alu
chr1151288172GA0.00312PI4KB-FALSE
chr2178406768TA0.00416AGPS+FALSE
chr5125961667AG1.34346E-05PHAX+TRUEAluSz6SINE,Alu
chr3194789330GT0.00699XXYLT1-FALSEAluJrSINE,Alu
chr3183547227TC7.80232E-05PARL-FALSE
chr5180236449GC0.00011MGAT1-FALSE
chr738765149CT0.00785VPS41-FALSE
chr1347345467GT0.00495ESD-FALSE
chr324163645CG1.00972E-05THRB-FALSE
chr1146650363TA0.00982PDIA3P1+FALSE
chr110517300TC0.00113.FALSEAluJrSINE,Alu
chr1160966301TC7.77749E-07F11R-TRUEAluSgSINE,Alu
chr237330144TG0.00478.FALSE
chr7137561078GA0.00558CREB3L2-FALSE(GT)nSINE,Alu
chr3196670094GC0.00669NCBP2-AS2+FALSE
chr4129795663TA0.00165JADE1+FALSE
chr642854611AG0.00541RPL7L1+TRUEAluScSINE,Alu
chr1186332550AT0.00328TPR-FALSE
chr1144053567CT0.00353.FALSE
chr237327651TC0.00395.FALSE
chr1766264542AT0.00110ARSG,SLC16A6+,-FALSE
chr2112252626AC0.00048MIR4435-2HG-FALSE
chr457796757GA0.00011REST+FALSE
chr1204521724AG0.00851MDM4+TRUEAluSgSINE,Alu
chr2216903544TC0.00929PECR-TRUEAluSx3SINE,Alu
chr11650797AG0.00798CDK11B,CDK11A-FALSE
chrX3523061CG0.00023PRKX-FALSE(AC)nSINE,Alu

Differential Expression Gene Analysis