RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr4	17804847	T	C	0.00306	DCAF16	-	TRUE	AluSx	SINE,Alu
chr1	214531239	C	T	6.46771E-05	PTPN14	-	FALSE
chr2	61416411	T	G	0.00146	USP34	-	FALSE	AluSc8	SINE,Alu
chr19	46053370	T	C	0.00045	OPA3	-	TRUE	AluSx1	SINE,Alu
chr1	16928737	C	T	0.00796	NBPF1	-	FALSE	ERVL-E-int	SINE,Alu
chr3	113351702	A	G	0.00042		.	FALSE	7SLRNA	SINE,Alu
chr2	105881486	A	G	0.00042	TGFBRAP1	-	FALSE
chr6	160526904	T	G	0.00027	IGF2R	+	FALSE
chr6	158613393	A	T	0.00108	GTF2H5	+	FALSE
chr3	181430454	G	A	0.00577	SOX2-OT,SOX2	+	FALSE
chr1	143135063	C	A	0.00397	LOC102723769	-	FALSE
chr2	61764920	C	A	0.00363	XPO1	-	FALSE
chr1	110466466	T	C	0.00135	CSF1	+	FALSE
chr19	53914411	A	G	8.16883E-05	ZNF765	+	TRUE	AluSx	SINE,Alu
chr17	5288078	A	G	0.00081	RABEP1	+	FALSE
chr1	145324364	C	G	0.00157	NBPF20,NBPF10	+	FALSE
chr1	150937960	G	C	0.00014	CERS2	-	FALSE	G-rich	SINE,Alu
chr1	54691922	T	A	0.00224	SSBP3	-	FALSE
chr2	118583874	C	G	0.00569	DDX18	+	FALSE
chr1	145689491	A	G	0.00701	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr2	9629954	T	C	0.00802	ADAM17	-	FALSE
chr3	119388380	T	C	0.00110	COX17	-	FALSE
chr1	86118417	T	G	0.00211	ZNHIT6	-	FALSE
chr6	57034841	G	T	0.00581	ZNF451,LOC101927211	+,-	FALSE
chr1	117945049	G	A	0.00120	MAN1A2	+	FALSE
chr2	176791182	T	C	0.00603	LNPK	-	TRUE	MSTD	SINE,Alu
chr16	23478710	C	A	0.00335	GGA2	-	FALSE	(AC)n	SINE,Alu
chr1	36067677	T	C	5.01583E-07	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	10519982	T	C	0.00417		.	FALSE	AluJr	SINE,Alu
chr4	17804847	T	C	0.00512	DCAF16	-	TRUE	AluSx	SINE,Alu
chr4	129795660	T	A	0.00454	JADE1	+	FALSE
chr3	10192596	A	G	9.40892E-06	VHL	+	TRUE	AluSx1	SINE,Alu
chr2	128952006	A	G	0.00701	UGGT1	+	TRUE	AluSx1	SINE,Alu
chr1	28939803	C	T	1.27013E-09	TAF12	-	FALSE
chr7	128294489	G	T	0.00354	LINC01000	+	FALSE
chr1	59122910	G	A	0.00251	MYSM1	-	FALSE
chr12	98943202	A	G	6.48893E-05	TMPO	+	TRUE	AluSz	SINE,Alu
chr1	117530273	A	G	0.00601	PTGFRN	+	FALSE
chr3	120114953	G	A	0.00373	FSTL1	-	FALSE
chr17	79529443	T	C	0.00153	NPLOC4	-	TRUE	AluSx1	SINE,Alu
chr3	170609385	C	T	0.00212	EIF5A2	-	FALSE
chr3	10322521	T	C	0.00531	TATDN2	+	FALSE
chr1	20976078	T	C	0.00344	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr19	1981317	T	A	0.00539	CSNK1G2	+	FALSE
chr8	145159718	G	C	0.00409	MAF1	+	FALSE
chr3	156259317	T	C	0.00189	SSR3	-	TRUE	AluSq2	SINE,Alu
chr1	204524400	A	G	0.00029	MDM4	+	TRUE	AluY	SINE,Alu
chr1	46117185	C	T	0.00714	GPBP1L1	-	FALSE
chr3	179115635	T	C	0.00453	GNB4	-	TRUE	AluSg7	SINE,Alu
chr1	53291425	A	G	0.00034	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	21940555	C	T	0.00067	RAP1GAP	-	FALSE
chr1	26449336	A	G	0.00343	PDIK1L	+	FALSE
chr1	145513017	A	G	3.59549E-05	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr7	143003517	T	A	0.00251	CASP2	+	FALSE	AluY	SINE,Alu
chr2	50147865	T	A	0.00112	NRXN1	-	FALSE	(GT)n	SINE,Alu
chr1	10521254	T	C	0.00522	DFFA	-	TRUE	AluY	SINE,Alu
chr3	197682718	T	C	0.00163	IQCG,RPL35A	+,-	FALSE
chr17	65335316	T	C	0.00296	PSMD12	-	TRUE	AluSx	SINE,Alu
chr1	45244411	C	A	0.00656	RPS8	+	FALSE
chr8	12880299	A	G	1.70760E-05	KIAA1456	+	TRUE	AluJo	SINE,Alu
chr1	6282400	T	C	0.00601	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	146400122	C	G	0.00190	NBPF20,NBPF10,NBPF25P,NBPF12	+	FALSE
chr1	101444791	C	T	0.00268	SLC30A7	+	FALSE
chr16	19725719	C	T	0.00471	KNOP1	-	FALSE
chr2	36776053	T	C	0.00029	CRIM1	+	FALSE
chr1	118167515	C	T	0.00852	FAM46C	+	FALSE
chr8	141461185	A	G	0.00793	TRAPPC9	-	FALSE
chr1	33149399	A	G	0.00308	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	53291382	A	G	0.00114	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	55062960	G	A	0.00542	ACOT11	+	FALSE
chr2	39009427	A	G	0.00673		.	FALSE	AluSx3	SINE,Alu
chr21	34730010	A	G	0.00518	IFNAR1	+	TRUE	AluSg7	SINE,Alu
chr7	94297294	T	G	0.00494	PEG10	+	FALSE
chr1	55317685	G	A	0.00121	DHCR24	-	FALSE	MIRb	SINE,Alu
chr1	19586294	A	G	0.00048	MRTO4	+	FALSE
chr12	124146077	A	G	1.08379E-05	GTF2H3	+	TRUE	AluSx4	SINE,Alu
chr1	20978457	T	C	0.00036	PINK1-AS,DDOST	-	TRUE	AluY	SINE,Alu
chr4	13604182	T	C	1.45661E-06	BOD1L1	-	FALSE
chr6	158093827	C	T	0.00201	ZDHHC14	+	FALSE
chr5	149823791	G	T	0.00480		.	FALSE
chr19	39982631	A	G	0.00316	TIMM50	+	TRUE	AluJr	SINE,Alu
chr17	57279253	A	G	1.08987E-07	PRR11	+	TRUE	AluSq2	SINE,Alu
chr1	1345051	A	G	0.00816		.	FALSE	AluSg	SINE,Alu
chr1	67874859	T	C	0.00027	SERBP1	-	TRUE	AluSx	SINE,Alu
chr3	44791351	T	C	0.00497	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr4	123816376	A	T	0.00445	FGF2,NUDT6	+,-	FALSE
chr1	10520154	T	C	0.00380		.	FALSE	AluSx	SINE,Alu
chr3	44790781	T	C	0.00289	KIAA1143	-	TRUE	AluY	SINE,Alu
chr2	32532840	A	G	0.00243		.	FALSE	AluSx1	SINE,Alu
chr1	193058937	C	T	0.00652	TROVE2	+	FALSE	AluSc	SINE,Alu
chr1	7833544	T	C	0.00186	VAMP3	+	FALSE
chr4	39550549	T	C	0.00014	UGDH-AS1,SMIM14	+,-	FALSE	AluSx1	SINE,Alu
chr1	36602178	A	T	0.00764	TRAPPC3	-	FALSE
chr5	40832557	G	T	0.00024	RPL37	-	FALSE
chr1	46075661	A	G	0.00071	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	153782011	C	T	0.00913	GATAD2B	-	FALSE
chr15	63363384	C	A	0.00161	TPM1	+	FALSE
chr6	99319240	T	A	0.00842		.	FALSE	Cheshire	SINE,Alu
chr4	2940485	T	C	2.93326E-08	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	19665566	A	C	0.00028	CAPZB	-	FALSE
chr10	129216658	T	C	0.00710	DOCK1	+	FALSE
chr14	75202372	A	G	8.84130E-05	FCF1	+	TRUE	AluSc	SINE,Alu
chr16	427820	C	T	0.00240	TMEM8A	-	FALSE
chr1	36067817	T	C	0.00016	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	9163393	T	C	0.00327		.	FALSE	AluSp	SINE,Alu
chr7	24731065	C	T	0.00414	MPP6	+	FALSE	(TGTATG)n	SINE,Alu
chr1	99164434	G	A	0.00309	SNX7	+	FALSE
chr2	240954005	C	A	0.00021	NDUFA10	-	FALSE
chr6	157405930	G	A	0.00077	ARID1B	+	FALSE
chr2	109374952	A	G	0.00031	RANBP2	+	FALSE
chr1	28826114	A	G	0.00264	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr3	49395693	C	G	0.00243	GPX1	-	FALSE	(GCC)n	SINE,Alu
chr1	1622754	A	G	0.00221	CDK11B,SLC35E2B	-	FALSE	MLT1F2	SINE,Alu
chr12	42719890	A	G	0.00730	ZCRB1	-	FALSE
chr1	179044180	A	G	0.00416	FAM20B	+	TRUE	AluSx	SINE,Alu
chrX	77083846	T	C	0.00668	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	145511998	A	G	0.00715	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	9160900	T	C	0.00628		.	FALSE	AluJb	SINE,Alu
chr5	34906587	T	C	0.00442	RAD1	-	TRUE	AluJo	SINE,Alu
chr1	33146255	C	A	0.00182	SYNC,RBBP4	+,-	FALSE
chrX	23721424	G	C	0.00651		.	FALSE
chr1	144595935	G	A	0.00061	NBPF20	+	FALSE	AluJb	SINE,Alu
chr3	196293764	G	C	0.00392	WDR53	-	FALSE
chr2	188330198	C	A	0.00091	TFPI	-	FALSE	AluJb	SINE,Alu
chr1	169101274	T	G	0.00026	ATP1B1	+	FALSE	(T)n	SINE,Alu
chr2	85773061	A	G	0.00052	GGCX	-	FALSE
chr1	145291108	A	C	0.00827	NBPF20	+	FALSE
chr5	118174745	T	C	0.00084	DTWD2	-	TRUE	AluY	SINE,Alu
chr3	22424406	A	T	0.00760		.	FALSE
chr7	38764395	T	C	0.00139	VPS41	-	TRUE	AluSp	SINE,Alu
chr11	65764470	T	C	0.00435	EIF1AD	-	TRUE	AluSz6	SINE,Alu
chr1	65297860	A	T	0.00847	RAVER2	+	FALSE
chr2	58387000	C	T	0.00027	VRK2,FANCL	+,-	FALSE
chr2	37328097	T	C	0.00301		.	FALSE
chr1	120455441	A	G	0.00872	NOTCH2	-	FALSE
chr1	79109337	G	T	0.00790	IFI44L	+	FALSE	LTR26	SINE,Alu
chr11	16771525	T	C	0.00014	C11orf58	+	FALSE
chr1	85785552	T	C	0.00334	DDAH1	-	FALSE
chr8	12880381	A	G	0.00031	KIAA1456	+	TRUE	AluJo	SINE,Alu
chr5	61683960	A	G	0.00491		.	FALSE
chr1	789050	G	A	0.00449	LINC01128	+	FALSE
chr1	40537940	A	C	0.00015	CAP1	+	FALSE	(A)n	SINE,Alu
chr11	76733945	A	T	0.00931	ACER3	+	FALSE	A-rich	SINE,Alu
chr3	73431830	A	G	0.00157	PDZRN3	-	FALSE
chr4	3514539	G	A	6.66134E-16	LRPAP1	-	FALSE
chr1	40538317	C	A	0.00178	CAP1	+	FALSE
chr1	9161090	A	G	0.00068		.	FALSE	AluJb	SINE,Alu
chr1	145283733	A	G	0.00458	NBPF20,NOTCH2NL	+	FALSE
chr2	206982296	T	C	0.00720		.	FALSE	AluSg7	SINE,Alu
chr1	53291420	A	G	0.00795	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr14	68117864	A	T	0.00744	ARG2	+	FALSE
chr1	10520219	T	C	0.00201		.	FALSE	AluSx	SINE,Alu
chr8	25222165	A	G	0.00019	DOCK5	+	FALSE
chr1	205683408	C	T	0.00082	NUCKS1	-	FALSE
chr1	109746728	A	G	0.00171	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr6	42856937	A	G	0.00122	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr2	99992822	A	C	0.00266	EIF5B	+	FALSE
chr1	982994	T	C	0.00432	AGRN	+	FALSE
chr16	31469030	T	C	0.00065		.	FALSE	AluSz	SINE,Alu
chr9	115447518	T	C	0.00084	INIP	-	TRUE	AluJb	SINE,Alu
chr2	24225554	A	G	0.00419		.	FALSE	AluSq2	SINE,Alu
chr19	12740463	A	G	0.00120	ZNF791	+	TRUE	AluYh3a3	SINE,Alu
chr1	67874731	T	C	0.00565	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr7	44917291	T	C	0.00019	PURB	-	TRUE	AluSz	SINE,Alu
chr1	117645998	A	G	0.00057		.	FALSE
chr1	1595077	T	C	0.00031	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr1	46077268	A	G	0.00484	NASP	+	TRUE	AluSc8	SINE,Alu
chr10	114209888	A	G	0.00386	VTI1A	+	TRUE	AluSx3	SINE,Alu
chr1	145512081	A	G	0.00579	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	981931	A	G	0.00951	AGRN	+	FALSE
chr2	99772813	A	G	1.48642E-06	LIPT1	+	TRUE	AluSx1	SINE,Alu
chr1	67874252	C	A	0.00558	SERBP1	-	FALSE
chr1	24288535	A	T	0.00271	PNRC2	+	FALSE
chr7	152342445	T	C	0.00059		.	FALSE	AluJo	SINE,Alu
chr1	64095111	A	G	0.00201	PGM1	+	FALSE
chr1	24862643	T	G	0.00933	RCAN3	+	FALSE
chr1	112266787	G	T	0.00873	FAM212B	-	FALSE
chr3	48787640	T	C	0.00320	PRKAR2A	-	TRUE	AluSp	SINE,Alu
chr15	41590999	A	G	0.00049	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr2	65432447	C	T	0.00486		.	FALSE
chr12	125511958	A	G	0.00010	THRIL	-	FALSE	AluSx1	SINE,Alu
chr2	198416734	A	T	0.00257	HSPE1-MOB4,MOB4	+	FALSE
chr12	92537721	A	T	0.00057	BTG1	-	FALSE
chr19	46214293	C	T	0.00137	FBXO46	-	FALSE
chr1	10520532	T	C	0.00013		.	FALSE	AluSx1	SINE,Alu
chr14	76662778	C	T	0.00261	GPATCH2L	+	FALSE
chr1	9162223	T	C	0.00997		.	FALSE	AluSx	SINE,Alu
chr10	61549818	A	G	0.00879	CCDC6	-	FALSE
chr1	23240255	G	A	0.00873	EPHB2	+	FALSE
chr5	64097145	C	G	0.00361	CWC27	+	FALSE
chr19	42376702	A	G	6.18708E-08		.	FALSE	AluSp	SINE,Alu
chr2	174086933	C	A	0.00457	ZAK,MLK7-AS1	+,-	FALSE	AluJo	SINE,Alu
chr17	36104904	A	G	0.00442	HNF1B	-	FALSE	G-rich	SINE,Alu
chr3	197362030	C	T	0.00302		.	FALSE
chr4	2841551	A	G	0.00258	SH3BP2	+	TRUE	AluJr	SINE,Alu
chr1	114438951	A	G	0.00012	AP4B1-AS1,AP4B1	+,-	FALSE
chr2	204294497	C	T	0.00203	ABI2	+	FALSE
chr4	9998493	A	G	5.94150E-05	SLC2A9	-	FALSE
chr1	569803	G	A	0.00695		.	FALSE
chr1	53289686	A	G	0.00063	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr12	54526562	A	T	0.00119	LOC400043	+	FALSE	L2a	SINE,Alu
chr1	220231263	T	C	0.00116	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr1	16927379	T	A	0.00864	NBPF1	-	FALSE
chr2	202031433	A	G	0.00611	CFLAR	+	FALSE	SVA_A	SINE,Alu
chr1	20826781	C	T	0.00296	MUL1	-	FALSE
chr2	85773689	T	C	0.00104	GGCX	-	TRUE	AluSx1	SINE,Alu
chr1	28662253	A	G	0.00117	MED18	+	TRUE	AluSq2	SINE,Alu
chr2	28002602	C	A	0.00037	MRPL33	+	FALSE
chr1	87573327	T	C	0.00571	HS2ST1	+	FALSE	(AT)n	SINE,Alu
chr1	10517314	T	C	8.82505E-05		.	FALSE	AluJr	SINE,Alu
chr19	58356478	A	G	0.00030	ZNF587B	+	TRUE	AluSx	SINE,Alu
chr6	42856039	A	G	1.34846E-05	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	179072966	C	T	0.00107	ABL2	-	FALSE	MIRc	SINE,Alu
chr1	67874696	T	C	0.00245	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	113234338	A	C	0.00051	MOV10	+	FALSE
chr3	124948045	G	C	0.00784	ZNF148	-	FALSE
chr4	2940364	T	C	0.00718	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	142688511	T	C	0.00089		.	FALSE
chr2	99813003	A	G	2.46688E-05	MRPL30	+	TRUE	AluJb	SINE,Alu
chr4	57327087	A	G	0.00047	PAICS	+	TRUE	AluSx1	SINE,Alu
chr3	126755134	C	T	0.00920	PLXNA1	+	FALSE
chr1	165877666	T	C	0.00327	UCK2	+	FALSE	(T)n	SINE,Alu
chr1	156499969	T	C	8.53229E-06	IQGAP3	-	FALSE
chr7	128829066	A	G	0.00816	SMO	+	FALSE
chr2	99772827	A	G	0.00108	LIPT1	+	TRUE	AluSx1	SINE,Alu
chr1	62627128	A	G	0.00111	PATJ	+	TRUE	AluSx	SINE,Alu
chr1	154557171	G	A	0.00329	ADAR	-	FALSE	A-rich	SINE,Alu
chr2	203744241	T	C	0.00511		.	FALSE	AluSx	SINE,Alu
chr3	86992161	C	G	0.00050	VGLL3	-	FALSE	(GT)n	SINE,Alu
chr1	100731820	G	A	0.00771	RTCA	+	FALSE
chr1	45975345	A	G	0.00120	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr1	28836973	A	G	0.00289	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr4	1193026	A	G	0.00471	SPON2,LOC100130872	-	FALSE	AluSp	SINE,Alu
chr1	10517314	T	C	0.00288		.	FALSE	AluJr	SINE,Alu
chr7	29960315	C	T	0.00015	SCRN1	-	FALSE
chr12	98943011	A	G	1.18352E-07	TMPO	+	TRUE	AluSz	SINE,Alu
chr6	114182982	C	A	0.00308	MARCKS	+	FALSE
chr4	89181477	T	C	7.00483E-05	PPM1K	-	TRUE	AluSx1	SINE,Alu
chr5	41917697	A	T	0.00051	C5orf51	+	FALSE
chr1	8931947	T	C	0.00059	ENO1	-	FALSE
chr2	97020049	T	C	0.00070	NCAPH	+	FALSE
chr1	10518688	T	C	0.00154		.	FALSE	AluSx1	SINE,Alu
chr3	156258319	T	C	0.00012	SSR3	-	TRUE	AluYk3	SINE,Alu
chr1	10520331	C	T	0.00527		.	FALSE	AluSx1	SINE,Alu

RBP	HNRNPUL1
Knock-Method	shRNA
RBP Family	SAP
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR034VBA
Platform	HiSeq
Pubmed ID	32252787

HNRNPUL1 - Target Gene Network