RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr4	57796757	G	A	0.00011	REST	+	FALSE
chr1	200521412	G	A	0.00110	KIF14	-	FALSE
chr2	37329369	T	C	0.00010		.	FALSE	AluJr4	SINE,Alu
chr7	128143945	A	G	0.00607		.	FALSE	AluSq2	SINE,Alu
chr3	195635455	T	C	0.00158	TNK2	-	FALSE
chr1	148341981	T	C	0.00226	NBPF8,NBPF14,NBPF9	-	FALSE
chr16	67715404	T	C	0.00102	GFOD2	-	TRUE	AluSz	SINE,Alu
chr5	174956487	T	C	0.00457	SFXN1	+	FALSE
chr5	40832550	C	T	7.98859E-06	RPL37	-	FALSE
chr5	112350098	C	T	7.36383E-05	DCP2	+	FALSE
chr2	37327670	T	C	0.00021		.	FALSE
chr9	132575828	A	T	0.00445	TOR1A	-	FALSE
chr1	110566210	T	A	0.00832	AHCYL1	+	FALSE
chr1	36531942	A	G	0.00042		.	FALSE	AluSq2	SINE,Alu
chr1	19810693	G	C	0.00042	CAPZB	-	FALSE
chr1	38326704	T	C	0.00328	INPP5B	-	TRUE	AluJr	SINE,Alu
chr13	25473685	C	T	0.00580	CENPJ	-	FALSE
chr1	87379494	A	T	0.00364	SEP15	-	FALSE
chr8	30536437	T	C	0.00062	GSR	-	FALSE	AluSp	SINE,Alu
chr1	46076462	A	G	1.23194E-07	NASP	+	TRUE	AluSx	SINE,Alu
chr1	114306372	A	G	0.00443	RSBN1	-	FALSE
chr3	50296329	G	A	0.00884	GNAI2	+	FALSE
chr3	14986104	T	C	0.00992	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr14	31916462	T	C	0.00059	LOC101927124,DTD2	+,-	FALSE	FLAM_C	SINE,Alu
chr1	155829140	C	G	0.00889	GON4L	-	FALSE
chr7	29960315	C	T	0.00015	SCRN1	-	FALSE
chr3	73117835	C	T	2.08399E-05	PPP4R2	+	FALSE
chr5	70248477	T	A	0.00163	SMN1,SMN2	+	FALSE	L1MC5a	SINE,Alu
chr7	6501833	A	T	0.00937	KDELR2	-	FALSE
chr3	133538762	A	T	0.00804	SRPRB	+	FALSE
chr12	125514124	A	G	3.15634E-06		.	FALSE	(TA)n	SINE,Alu
chr16	75480021	T	C	0.00270	TMEM170A	-	TRUE	AluSg4	SINE,Alu
chr14	23300663	G	A	0.00120	MRPL52	+	FALSE	MIRb	SINE,Alu
chr2	37331019	T	C	0.00033		.	FALSE	AluSx1	SINE,Alu
chr7	44841931	A	G	0.00054	PPIA	+	TRUE	AluSx	SINE,Alu
chr1	11979809	A	C	0.00525	KIAA2013	-	FALSE
chr1	16889624	T	C	3.50465E-05	NBPF1	-	TRUE
chr4	113152490	G	A	0.00221		.	FALSE
chr3	197612430	A	G	0.00052		.	FALSE	AluSp	SINE,Alu
chr19	53914417	A	G	0.00013	ZNF765	+	TRUE	AluSx	SINE,Alu
chr1	46827871	G	A	0.00014	NSUN4	+	FALSE
chr1	16889596	T	C	0.00905	NBPF1	-	TRUE
chr2	101635538	C	T	0.00069	TBC1D8,RPL31	+,-	FALSE	Charlie17	SINE,Alu
chr2	37331037	T	C	0.00026		.	FALSE	AluSx1	SINE,Alu
chr1	109747415	A	G	0.00549	KIAA1324	+	TRUE	AluJr4	SINE,Alu
chr1	1152309	A	T	0.00035	SDF4	-	FALSE
chr1	241792562	A	G	0.00800	OPN3,CHML	-	FALSE
chr1	10368093	C	A	0.00131	KIF1B	+	FALSE
chr2	208620129	A	G	0.00061	CCNYL1	+	TRUE	EutTc1-N1	SINE,Alu
chr22	31744347	A	G	0.00113	LINC01521	+	TRUE	AluSp	SINE,Alu
chr1	117532790	C	T	0.00981	PTGFRN	+	FALSE
chr1	40537947	A	C	0.00295	CAP1	+	FALSE
chr16	48386354	A	G	0.00064	LONP2,MIR5095	+	TRUE	AluSz6	SINE,Alu
chr1	33149414	A	G	0.00722	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	146650363	T	A	0.00982	PDIA3P1	+	FALSE
chr1	10520764	T	C	0.00501	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	156613632	G	A	0.00187	BCAN	+	FALSE
chr7	6066461	T	C	2.08606E-05	EIF2AK1	-	FALSE
chr13	47325380	G	A	0.00270	LRCH1	+	FALSE
chr1	28566461	T	C	1.61071E-05		.	FALSE	AluSx1	SINE,Alu
chr1	24796069	A	C	0.00403	NIPAL3	+	FALSE
chr1	18808465	T	A	0.00957	KLHDC7A	+	FALSE
chr1	145689537	A	G	0.00593	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr4	68587786	G	T	0.00658	UBA6-AS1	+	FALSE	MER41B	SINE,Alu
chr9	19376249	G	T	5.55883E-05		.	FALSE
chr4	99801986	C	A	0.00687	EIF4E	-	FALSE
chr1	120164545	T	G	0.00058	ZNF697	-	FALSE
chr1	79126336	C	G	1.94494E-06	IFI44	+	FALSE
chr2	37330368	T	C	0.00069		.	FALSE	AluSq2	SINE,Alu
chr1	6282295	T	C	0.00060	ICMT	-	TRUE	AluSz	SINE,Alu
chr9	116812614	A	G	0.00674	ZNF618	+	FALSE
chr8	48890293	A	G	0.00125	MCM4	+	TRUE	AluJb	SINE,Alu
chr4	2940477	T	C	1.61307E-05	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	151372040	A	T	0.00825		.	FALSE
chr1	65297860	A	T	0.00847	RAVER2	+	FALSE
chr2	37429626	A	G	0.00385	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr1	16889639	T	C	0.00350	NBPF1	-	TRUE
chr1	16933631	G	A	0.00442	NBPF1	-	FALSE	GA-rich	SINE,Alu
chrX	118672600	T	C	0.00080	CXorf56	-	TRUE	AluSx	SINE,Alu
chr1	92862764	A	G	0.00415		.	FALSE	AluJr	SINE,Alu
chr1	40539213	A	G	0.00693	PPT1	-	FALSE
chr1	19585519	A	G	3.44907E-05	MRTO4	+	TRUE	AluSc8	SINE,Alu
chr1	224517842	C	T	0.00014	NVL	-	FALSE
chr8	143413136	C	T	0.00267	TSNARE1	-	FALSE
chr2	37431485	A	G	0.00339	CEBPZOS,CEBPZ	+,-	FALSE	AluSc	SINE,Alu
chr5	68463014	G	T	0.00011	CCNB1	+	FALSE
chr8	12286573	G	A	0.00052	FAM86B2	-	FALSE
chr3	14239845	G	A	0.00375	LSM3	+	FALSE
chr2	74349080	A	G	0.00094		.	FALSE	AluSz	SINE,Alu
chr22	18572728	A	G	0.00050	PEX26	+	TRUE	AluYf1	SINE,Alu
chr1	31905888	C	A	0.00667	SERINC2	+	FALSE
chr1	201860626	A	G	0.00599	SHISA4	+	FALSE
chr12	133298417	A	G	6.66134E-16	PGAM5	+	TRUE	AluSp	SINE,Alu
chr1	16861718	C	T	0.00891	LOC100132147	-	FALSE
chr1	326500	A	G	0.00189		.	FALSE
chr1	9161245	T	C	0.00429		.	FALSE	AluSx	SINE,Alu
chr1	22854702	C	T	4.66415E-11	ZBTB40	+	FALSE
chr1	25169634	A	G	0.00843	CLIC4	+	FALSE
chr5	34908535	T	C	0.00054	RAD1	-	FALSE	AluSp	SINE,Alu
chr2	132481480	T	C	0.00989	C2orf27A	+	FALSE
chr4	155457049	T	A	0.00434	PLRG1	-	FALSE	L2d2	SINE,Alu
chr1	145688973	A	G	0.00283	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr1	65692498	T	C	0.00356	AK4	+	FALSE	(T)n	SINE,Alu
chr1	27202960	T	C	0.00213		.	FALSE	AluSq2	SINE,Alu
chr2	99812864	A	G	0.00810	MRPL30	+	TRUE	AluJb	SINE,Alu
chr3	62189314	C	T	0.00018	PTPRG	+	FALSE
chr1	25894460	T	A	0.00520	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr1	155058663	G	A	0.00300	EFNA3	+	FALSE
chr1	145291217	C	T	0.00415	NBPF20	+	FALSE
chr1	19201928	C	T	0.00149	ALDH4A1	-	FALSE
chr8	143763618	C	G	0.00421	PSCA	+	FALSE
chr4	57326875	A	G	0.00797	PAICS	+	TRUE	AluSx1	SINE,Alu
chr1	93297595	G	T	0.00479	RPL5	+	FALSE
chr4	109734309	T	C	0.00197	COL25A1	-	FALSE
chr5	125961468	A	G	2.27854E-07	PHAX	+	TRUE	AluSz6	SINE,Alu
chr10	126677250	G	T	0.00762	CTBP2	-	FALSE
chr1	16133912	T	C	0.00126	UQCRHL	-	TRUE
chr1	89447839	C	G	0.00488	KYAT3,RBMXL1	-	FALSE
chr3	169810030	T	C	0.00659	PHC3	-	TRUE	AluSx	SINE,Alu
chr3	47386062	T	A	4.63678E-05	KLHL18	+	FALSE
chr4	7761211	C	T	8.70555E-11	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	183155546	G	A	0.00103	LAMC2	+	FALSE
chr1	207942509	A	G	0.00177	CD46	+	TRUE	AluSg4	SINE,Alu
chr4	41956413	C	T	0.00543	TMEM33	+	FALSE
chr13	21547673	G	A	0.00974	LATS2	-	FALSE	(TG)n	SINE,Alu
chr1	144930596	C	A	0.00013	NBPF20,PDE4DIP	+,-	FALSE
chr14	75202856	A	G	3.12821E-09	FCF1	+	TRUE	AluSx	SINE,Alu
chr9	96438974	C	G	0.00083	PHF2	+	FALSE	(CTCCAC)n	SINE,Alu
chr1	229738170	T	G	0.00168	TAF5L	-	FALSE
chr3	49131374	G	C	0.00905	QRICH1	-	FALSE	(CCG)n	SINE,Alu
chr12	25358969	T	G	0.00965	KRAS	-	FALSE
chr16	29707549	A	G	0.00025	QPRT	+	TRUE	AluJr	SINE,Alu
chr1	145281613	C	A	0.00979	NBPF20,NOTCH2NL	+	FALSE
chr7	96318078	A	T	0.00790		.	FALSE
chr3	121382204	C	T	0.00309	GOLGB1	-	FALSE
chr1	160967857	T	C	0.00806	F11R	-	TRUE	AluSp	SINE,Alu
chr1	110950295	C	A	0.00359	LAMTOR5	-	FALSE
chr1	6283306	T	C	0.00275	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	31905887	A	C	0.00221	SERINC2	+	FALSE
chr2	96915238	T	C	2.48142E-05		.	FALSE	AluJr	SINE,Alu
chr1	205115428	C	T	4.25965E-05	DSTYK	-	FALSE
chr19	19792345	A	G	0.00272	ZNF101	+	TRUE	AluJb	SINE,Alu
chr1	10042987	A	G	0.00261	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr2	37331037	T	C	0.00538		.	FALSE	AluSx1	SINE,Alu
chr3	10193358	A	G	0.00317	VHL	+	TRUE	L1ME4a	SINE,Alu
chr12	98943011	A	G	1.18352E-07	TMPO	+	TRUE	AluSz	SINE,Alu
chr6	133135886	A	G	0.00629	RPS12	+	FALSE
chr1	1344757	A	G	0.00024		.	FALSE	AluSx1	SINE,Alu
chr1	201939479	T	A	0.00645	TIMM17A	+	FALSE
chr9	89626918	A	G	0.00048	LOC440173	-	FALSE
chr1	165877575	A	C	0.00839	UCK2	+	FALSE
chr2	113509977	C	T	0.00197	CKAP2L	-	FALSE
chr1	62628606	A	G	0.00164	PATJ	+	TRUE	AluSg4	SINE,Alu
chr15	90819423	A	G	3.09408E-05		.	FALSE	AluSx	SINE,Alu
chr5	122359502	A	C	0.00707	PPIC	-	FALSE	(AC)n	SINE,Alu
chr2	37329331	T	C	0.00343		.	FALSE	AluJr4	SINE,Alu
chr17	48771484	C	A	0.00737	ANKRD40	-	FALSE	AluSz	SINE,Alu
chr12	12796592	A	C	0.00801	CREBL2	+	FALSE
chr1	67874859	T	C	0.00071	SERBP1	-	TRUE	AluSx	SINE,Alu
chr10	124815149	C	G	0.00993	ACADSB	+	FALSE	THE1A-int	SINE,Alu
chr2	219433597	G	A	0.00328	CNOT9	+	FALSE
chr1	35223881	G	A	0.00228	GJB5	+	FALSE
chr1	53708528	T	C	0.00057	LRP8	-	FALSE	(TA)n	SINE,Alu
chr1	788795	T	G	0.00333	LINC01128	+	FALSE	Charlie19a	SINE,Alu
chr1	95658342	A	T	0.00123	TMEM56-RWDD3,LOC101928118,TMEM56	+,-	FALSE
chr4	165998078	T	C	0.00407	TMEM192	-	TRUE	AluSx	SINE,Alu
chr3	100467676	A	T	0.00288	TFG	+	FALSE
chr1	1662694	T	C	0.00398	SLC35E2	-	TRUE	AluY	SINE,Alu
chrX	77084017	T	C	0.00179	MAGT1	-	TRUE	AluSz	SINE,Alu
chr3	14986111	T	C	0.00999	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr3	10192747	A	G	0.00893	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	52306082	A	T	0.00038	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr10	51943605	C	T	0.00508		.	FALSE	MLT1J	SINE,Alu
chr7	94297293	G	T	0.00573	PEG10	+	FALSE
chr7	35737649	G	A	0.00566	LOC101930085	+	FALSE	AluSz	SINE,Alu
chr2	176792488	G	T	0.00195	LNPK	-	FALSE
chr1	93804952	G	A	0.00421	CCDC18-AS1	-	FALSE
chr20	43707759	A	G	0.00090	STK4	+	TRUE	AluJb	SINE,Alu
chr3	14986200	G	T	0.00346	FGD5-AS1	-	FALSE	AluSq2	SINE,Alu
chr12	49745500	A	G	0.00265	DNAJC22	+	TRUE	AluSx3	SINE,Alu
chr1	202984020	A	T	0.00842	TMEM183A,TMEM183B	+	FALSE
chr17	57281069	A	G	0.00278	PRR11	+	TRUE	AluSz	SINE,Alu
chr1	39317318	C	A	1.55431E-15	RRAGC	-	FALSE
chr1	53680205	C	T	4.54902E-05	C1orf123	-	FALSE
chr4	2940462	T	C	6.45116E-07	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr10	13687171	T	C	0.00033	FRMD4A	-	FALSE
chr15	34634033	A	G	0.00939	NOP10	-	FALSE
chr2	32535691	A	G	0.00023		.	FALSE	AluJb	SINE,Alu
chr14	53109732	T	C	0.00013	ERO1A	-	TRUE	MER53	SINE,Alu
chr14	23794557	T	A	0.00983	BCL2L2-PABPN1,PABPN1	+	FALSE	A-rich	SINE,Alu
chr14	70838369	T	C	0.00015	SYNJ2BP-COX16,SYNJ2BP	-	TRUE	AluSg	SINE,Alu
chr9	89626839	T	G	0.00016	LOC440173	-	FALSE
chr2	86248309	T	C	0.00808	LOC90784	-	FALSE
chr4	248840	A	G	0.00655	ZNF876P	+	TRUE	AluYk3	SINE,Alu
chr1	11783776	C	A	0.00039		.	FALSE	AluSq	SINE,Alu
chr1	9644587	A	G	0.00022		.	FALSE	AluSx	SINE,Alu
chr12	96661616	A	G	0.00057	ELK3	+	FALSE
chr15	22969232	G	A	0.00017	CYFIP1	+	FALSE
chr7	94297294	T	G	0.00494	PEG10	+	FALSE
chr4	40138676	A	G	0.00157	N4BP2	+	FALSE
chr1	19234103	G	A	0.00014	IFFO2	-	FALSE
chr1	51434560	G	A	0.00685	CDKN2C	+	FALSE
chr9	19376248	A	T	0.00821		.	FALSE
chr1	58999651	T	G	0.00980	OMA1	-	FALSE
chr1	201488771	A	G	0.00062		.	FALSE	AluSq2	SINE,Alu
chr2	20449068	A	G	0.00014	PUM2	-	FALSE
chr3	14986471	T	C	3.70393E-05	FGD5-AS1	-	TRUE	AluSq2	SINE,Alu

RBP	TRIM56
Knock-Method	shRNA
RBP Family	Non-canonical_RBP
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR300QFQ
Platform	HiSeq
Pubmed ID	32252787

TRIM56 - Target Gene Network