RBPFunction

Dataset Overview

RBP	KHSRP
Knock-Method	CRISPRi
RBP Family	KH_1
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR900AQL
Platform	HiSeq
Pubmed ID	32252787

KHSRP - Target Gene Network

up-regulated gene

down-regulated gene

Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of KHSRP

Show entries

Search:

Gene	Mean Expr. of Control	Mean Expr. of KD/KO	logFC	PValue	FDR
A1BG-AS1	10.12	7.07	-0.50967	0.04192	0.14654
AAAS	82.98	90.75	0.24940	0.03832	0.13796
AACS	10.01	13.22	0.44948	0.00102	0.00990
AACSP1	2.05	0.78	-1.49180	2.46312E-05	0.00052
AAK1	10.61	7.07	-0.52711	0.00141	0.01269
AAMP	93.73	79.81	-0.26622	0.02629	0.10605
AAR2	20.52	16.27	-0.27401	0.04517	0.15392
AARS	175.0	250.35	0.47302	7.74505E-05	0.00128
ABC7-42389800N19.1	14.64	10.39	-0.42142	0.02037	0.08815
ABCA2	35.92	40.44	0.48072	5.40881E-05	0.00097

Showing 1 to 10 of 4,241 entries

Function Analysis of Target Genes of KHSRP

Differential Alternative Splicing

Show entries

Search:

RBP	LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE	pValue	△Inc	Dataset ID	Sashimi plot
No data available in table

Showing 0 to 0 of 0 entries

Show entries

Search:

RBP	LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE	pValue	△Inc	Dataset ID	Sashimi plot
No data available in table

Showing 0 to 0 of 0 entries

Show entries

Search:

RBP	LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE	pValue	△Inc	Dataset ID	Sashimi plot
No data available in table

Showing 0 to 0 of 0 entries

Show entries

Search:

RBP	LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE	pValue	△Inc	Dataset ID	Sashimi plot
No data available in table

Showing 0 to 0 of 0 entries

Show entries

Search:

RBP	LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE	pValue	△Inc	Dataset ID	Sashimi plot
No data available in table

Showing 0 to 0 of 0 entries

Differential Variants in RNA (DVRs)

Show entries

Search:

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	78029905	T	A	0.00256	ZZZ3	-	FALSE
chr1	79003523	C	G	0.00036	PTGFR	+	FALSE
chr1	220231484	T	C	0.00954	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr1	1595586	T	C	0.00108	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr1	150548887	C	T	0.00014	MCL1	-	FALSE
chr1	9163442	T	C	0.00235		.	FALSE	AluSp	SINE,Alu
chr1	156692052	T	A	0.00369	ISG20L2	-	FALSE	AluY	SINE,Alu
chr1	52253793	C	T	0.00966	OSBPL9	+	FALSE
chr1	228107281	G	A	0.00833		.	FALSE
chr1	20976843	G	C	0.00202	PINK1,PINK1-AS	+,-	FALSE

Showing 1 to 10 of 390 entries

Differential Expression Gene Analysis