RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	109737090	G	A	0.00173	KIAA1324	+	FALSE
chr5	82877162	G	A	0.00296	VCAN	+	FALSE	(A)n	SINE,Alu
chr1	28607959	C	A	0.00230	SESN2	+	FALSE
chr19	42375611	A	G	0.00426		.	FALSE	AluSx	SINE,Alu
chr1	10521200	T	C	0.00013	DFFA	-	TRUE	AluY	SINE,Alu
chr3	196044972	C	T	0.00258	TCTEX1D2,TM4SF19-TCTEX1D2	-	FALSE
chr1	158631171	A	C	0.00815	SPTA1	-	FALSE
chr1	183094547	T	C	0.00277	LAMC1	+	FALSE
chr1	183486859	G	A	0.00831	SMG7	+	FALSE
chr1	33149508	A	G	0.00107	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr4	7060935	G	C	0.00543	GRPEL1	-	FALSE	Tigger4a	SINE,Alu
chr1	11083183	G	T	0.00342	TARDBP	+	FALSE
chr1	9161179	T	C	0.00570		.	FALSE	AluSx	SINE,Alu
chr2	99812876	A	G	0.00394	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	1595006	T	C	1.43617E-06	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr1	8938808	C	A	0.00030	ENO1	-	FALSE
chr1	150048520	C	T	0.00089	VPS45	+	FALSE
chr5	34906692	T	C	0.00021	RAD1	-	TRUE	AluJo	SINE,Alu
chr1	84373309	T	C	0.00627	TTLL7	-	FALSE
chr1	46076468	A	G	0.00069	NASP	+	TRUE	AluSx	SINE,Alu
chr1	160990875	T	C	9.42851E-06	F11R	-	FALSE
chr2	242164677	A	G	0.00117	ANO7	+	TRUE	AluSg	SINE,Alu
chr1	55207985	G	A	0.00156	MROH7-TTC4,TTC4	+	FALSE
chr3	160154971	T	C	0.00820	TRIM59	-	FALSE	AluJb	SINE,Alu
chr1	144931392	G	A	0.00241	NBPF20,PDE4DIP	+,-	FALSE
chr5	65452100	G	T	0.00600	SREK1	+	FALSE	(TTTTTG)n	SINE,Alu
chr1	40147856	T	C	0.00205	HPCAL4	-	TRUE
chr1	179044181	A	G	0.00790	FAM20B	+	TRUE	AluSx	SINE,Alu
chr16	90037828	G	A	0.00029	CENPBD1	-	FALSE	Tigger12	SINE,Alu
chr5	41917697	A	T	0.00051	C5orf51	+	FALSE
chr16	31469051	T	C	0.00278		.	FALSE	AluSz	SINE,Alu
chr1	42884086	G	T	0.00040	RIMKLA	+	FALSE
chr1	9161203	T	C	0.00235		.	FALSE	AluSx	SINE,Alu
chr6	74134744	T	C	0.00214		.	FALSE	AluSz	SINE,Alu
chr6	133135886	A	G	0.00629	RPS12	+	FALSE
chr2	37327666	T	C	0.00028		.	FALSE
chr5	122359498	A	C	0.00362	PPIC	-	FALSE	(AC)n	SINE,Alu
chr6	32796463	A	C	0.00680		.	FALSE	(CCCCA)n	SINE,Alu
chr1	1152310	C	T	0.00133	SDF4	-	FALSE
chr2	112252630	A	C	0.00040	MIR4435-2HG	-	FALSE
chr1	28823671	T	C	0.00073	PHACTR4	+	FALSE
chr1	6583383	T	C	0.00305	NOL9	-	TRUE	AluSq	SINE,Alu
chr1	10519910	T	C	0.00735		.	FALSE	AluJr	SINE,Alu
chr1	20976589	C	T	0.00407	PINK1,PINK1-AS	+,-	FALSE
chr1	31838550	T	A	0.00595	FABP3	-	FALSE
chr2	74442548	C	T	0.00035		.	FALSE
chr1	163309219	A	T	0.00023	NUF2	+	FALSE
chr4	144442611	T	C	0.00899	SMARCA5	+	FALSE
chr4	153898334	A	G	0.00662	FHDC1	+	FALSE	AluJo	SINE,Alu
chr15	31619607	G	A	0.00887	KLF13	+	FALSE
chr1	10519932	T	C	0.00012		.	FALSE	AluJr	SINE,Alu
chr2	37330431	T	C	0.00231		.	FALSE	AluSq2	SINE,Alu
chr4	2940243	T	A	0.00028	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr10	89004545	T	C	0.00192	NUTM2A-AS1	-	FALSE	MSTA	SINE,Alu
chr10	45499895	G	A	0.00255	ZNF22	+	FALSE
chr1	1594835	C	G	0.00195	CDK11B,SLC35E2B	-	FALSE
chr1	16889624	T	C	0.00795	NBPF1	-	TRUE
chr1	19984098	C	G	0.00826	MINOS1-NBL1,NBL1	+	FALSE
chr2	128952015	A	G	0.00908	UGGT1	+	TRUE	AluSx1	SINE,Alu
chr2	118589029	T	G	0.00058	DDX18	+	FALSE
chr2	127826533	A	G	0.00104	BIN1	-	FALSE
chr1	27202812	T	C	0.00353		.	FALSE	AluSq2	SINE,Alu
chr16	74655596	T	G	0.00028	RFWD3	-	FALSE	AluSx	SINE,Alu
chr14	61112736	T	G	0.00418	SIX1	-	FALSE	(T)n	SINE,Alu
chr1	145512073	A	G	0.00285	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	2335348	C	T	0.00018	RER1	+	FALSE
chr2	62095566	C	T	0.00471	CCT4	-	FALSE
chr9	136897584	C	A	0.00060	BRD3	-	FALSE	A-rich	SINE,Alu
chr2	69690885	T	C	0.00970	AAK1	-	TRUE	AluSx3	SINE,Alu
chr1	990984	G	A	0.00787	AGRN	+	FALSE
chr8	6263057	A	C	0.00419	LOC100287015	-	FALSE
chr3	86993604	G	T	0.00195	VGLL3	-	FALSE	AluJo	SINE,Alu
chr1	6283305	T	C	0.00129	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	54231847	A	C	0.00097	NDC1	-	FALSE
chr1	53288870	A	G	3.51337E-08	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr3	196078364	G	A	6.64958E-05		.	FALSE	GA-rich	SINE,Alu
chr3	155660279	A	G	0.00594		.	FALSE
chr6	44417159	A	G	0.00959	CDC5L	+	TRUE	FLAM_C	SINE,Alu
chr2	67631831	G	A	0.00423	ETAA1	+	FALSE
chr6	33268621	T	C	0.00367		.	FALSE	AluY	SINE,Alu
chr6	38670804	G	C	0.00400	GLO1	-	FALSE
chr14	53243434	T	C	5.94655E-10	GNPNAT1	-	TRUE	AluSx3	SINE,Alu
chr1	184761365	A	G	0.00758	FAM129A	-	FALSE	AluJo	SINE,Alu
chr1	1650657	C	G	0.00379	CDK11B,CDK11A	-	FALSE
chr1	46829013	A	G	0.00360	NSUN4	+	FALSE
chr1	28836872	A	G	0.00019	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr1	38326774	T	C	0.00664	INPP5B	-	TRUE	AluJr	SINE,Alu
chr1	153599390	T	C	0.00135	S100A13	-	FALSE
chr2	201774342	T	C	0.00127		.	FALSE	AluSz	SINE,Alu
chr10	15119789	T	C	0.00366	ACBD7	-	TRUE	AluSx1	SINE,Alu
chr19	11256725	T	C	7.46879E-09	SPC24	-	TRUE	AluJr4	SINE,Alu
chr1	115248084	C	T	0.00171	NRAS	-	FALSE
chr4	39550085	T	C	3.55103E-05	UGDH-AS1,SMIM14	+,-	FALSE	FLAM_C	SINE,Alu
chr1	87379494	A	T	0.00364	SEP15	-	FALSE
chr2	54896390	G	T	0.00110	SPTBN1	+	FALSE
chr1	33148623	A	G	0.00221	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	150619971	G	A	0.00126	GOLPH3L	-	FALSE	AluJo	SINE,Alu
chr9	132573290	C	T	0.00881	TOR1B	+	FALSE
chr8	145159709	C	A	0.00314	MAF1	+	FALSE
chr1	33149408	A	G	0.00624	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	202993614	G	T	0.00990	TMEM183A	+	FALSE	(T)n	SINE,Alu
chr10	79800439	A	T	0.00380	RPS24	+	FALSE
chr22	16148322	A	G	0.00933		.	FALSE	L1ME2z	SINE,Alu
chr2	202032107	A	G	0.00401	CFLAR	+	TRUE	AluJo	SINE,Alu
chr1	36806071	G	A	0.00126	STK40	-	FALSE
chr1	36068276	T	C	0.00225	PSMB2	-	TRUE	AluSc	SINE,Alu
chr5	175803244	A	G	0.00245		.	FALSE	AluSc8	SINE,Alu
chr6	57034840	T	G	0.00581	ZNF451,LOC101927211	+,-	FALSE
chr2	232328545	C	T	0.00581	NCL	-	FALSE
chr1	19934893	C	A	0.00171	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr18	2544702	G	A	0.00522	METTL4	-	FALSE
chr2	99812978	A	G	0.00167	MRPL30	+	TRUE	AluJb	SINE,Alu
chr8	30536015	T	C	6.64592E-05	GSR	-	TRUE	AluJr	SINE,Alu
chr2	99812447	A	G	0.00587	MRPL30	+	TRUE	AluSx	SINE,Alu
chr19	56090351	C	T	1.52943E-09	ZNF579	-	FALSE
chr1	100548868	T	C	0.00114	MFSD14A	+	FALSE
chr3	99517483	C	T	0.00070	MIR548G	-	FALSE	(TG)n	SINE,Alu
chr1	46075663	A	G	0.00013	NASP	+	TRUE	AluSx4	SINE,Alu
chr10	1086801	G	C	0.00421	IDI2-AS1,IDI1	+,-	FALSE
chr9	114696428	G	T	0.00163	UGCG	+	FALSE	(TGTTTTT)n	SINE,Alu
chr2	85773494	T	C	0.00099	GGCX	-	TRUE	AluY	SINE,Alu
chr2	46524711	C	T	0.00513	EPAS1	+	FALSE
chr1	31351513	G	A	0.00265	SDC3	-	FALSE
chr3	14986461	T	C	3.09385E-06	FGD5-AS1	-	TRUE	AluSq2	SINE,Alu
chr1	74665493	G	A	0.00128	FPGT-TNNI3K,FPGT	+	FALSE
chr1	46828657	C	T	0.00378	NSUN4	+	FALSE
chr1	227922767	G	T	0.00202	SNAP47,JMJD4	+,-	FALSE
chr14	90509564	C	T	0.00552	TDP1	+	FALSE
chr2	31491075	A	G	0.00061	EHD3	+	FALSE
chr17	76626300	C	T	0.00097	LOC101928710	-	FALSE
chr1	76255228	G	A	0.00073	RABGGTB,SNORD45B	+	FALSE
chr2	38971635	C	G	0.00011	SRSF7	-	FALSE
chr10	47221465	T	C	0.00201		.	FALSE	AluJb	SINE,Alu
chr1	168218522	A	G	0.00073		.	FALSE	AluSz	SINE,Alu
chr1	205737665	G	T	0.00025	RAB29	-	FALSE	AluSq2	SINE,Alu
chrX	77083939	T	C	5.71267E-05	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	161930908	G	A	0.00664	ATF6	+	FALSE
chr4	2940098	T	C	0.00034	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	31344952	C	T	0.00842	SDC3	-	FALSE
chr4	52888499	G	A	0.00366	SGCB	-	FALSE
chr1	179876988	C	G	0.00047	TOR1AIP1	+	FALSE
chr17	1684352	T	C	0.00793	SMYD4	-	TRUE	AluSx1	SINE,Alu
chr6	71299074	A	G	0.00824		.	FALSE	AluSx1	SINE,Alu
chr17	61909370	G	A	0.00152	PSMC5	+	FALSE
chr4	48854139	T	C	0.00133	OCIAD1	+	FALSE	L2c	SINE,Alu
chr1	179042550	A	G	0.00831	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr1	3730400	T	C	0.00018	CEP104	-	TRUE	AluSx3	SINE,Alu
chr1	1252221	T	C	0.00728	CPSF3L	-	TRUE	AluSx	SINE,Alu
chr1	1164179	G	A	0.00983	SDF4	-	FALSE	G-rich	SINE,Alu
chr1	16945570	A	G	0.00131	CROCCP2	-	FALSE
chr6	158517308	A	G	0.00959	SYNJ2	+	FALSE
chr1	10518821	T	C	0.00277		.	FALSE	AluSx1	SINE,Alu
chr1	145513017	A	G	0.00142	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	1677253	T	C	0.00145	SLC35E2	-	FALSE
chr1	144931727	G	A	0.00211	NBPF20,PDE4DIP	+,-	FALSE
chr1	149913733	T	C	0.00143	OTUD7B	-	TRUE	MER96B	SINE,Alu
chr1	156563898	T	C	0.00216	NAXE	+	FALSE
chr4	88059194	C	T	0.00681	AFF1	+	FALSE
chr1	45976220	A	G	0.00031	MMACHC	+	TRUE
chr1	33149338	A	G	0.00367	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	32742441	G	A	2.50972E-10	LCK	+	FALSE
chr1	120695749	A	G	0.00130		.	FALSE
chr2	128620438	C	A	0.00230	AMMECR1L	-	FALSE
chr4	165998078	T	C	0.00567	TMEM192	-	TRUE	AluSx	SINE,Alu
chr1	93299394	A	G	0.00655	FAM69A,RPL5	+,-	FALSE
chr16	69151495	T	A	0.00304	HAS3	+	FALSE	(T)n	SINE,Alu
chr6	42856156	A	G	0.00105	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	10518734	T	C	0.00249		.	FALSE	AluSx1	SINE,Alu
chr2	127826533	A	G	0.00942	BIN1	-	FALSE
chr2	39010088	A	G	0.00192		.	FALSE	AluSp	SINE,Alu
chr2	132481508	C	G	0.00093	C2orf27A	+	FALSE
chr1	36068370	T	C	0.00067	PSMB2	-	TRUE	AluSc	SINE,Alu
chr10	98278593	A	T	0.00792	TM9SF3	-	FALSE
chr1	205759960	C	T	4.24096E-05	SLC41A1	-	FALSE
chr6	79595097	A	G	0.00712	IRAK1BP1	+	FALSE
chr1	109475706	T	C	0.00375	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr7	143003525	T	A	0.00064	CASP2	+	FALSE	AluY	SINE,Alu
chr7	143003523	T	G	2.48474E-05	CASP2	+	FALSE	AluY	SINE,Alu
chr1	178887208	A	T	0.00239	RALGPS2	+	FALSE
chr1	114306563	T	A	0.00191	RSBN1	-	FALSE
chr8	128944720	G	T	0.00751	PVT1	+	FALSE
chr15	65442678	T	C	2.30704E-07	CLPX	-	TRUE	AluSg4	SINE,Alu
chr1	566678	C	T	0.00559		.	FALSE
chr3	172117458	A	C	0.00011	FNDC3B	+	FALSE
chr1	20826781	C	T	1.74444E-05	MUL1	-	FALSE
chr3	52289709	G	C	4.88711E-11	WDR82	-	FALSE	MIR	SINE,Alu
chr16	57505635	G	T	0.00974	POLR2C	+	FALSE
chr1	32373437	G	A	1.22125E-14	PTP4A2	-	FALSE
chr7	65844563	G	A	0.00581	LINC00174	-	FALSE
chr1	67874697	T	C	0.00642	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr15	90815820	A	G	0.00171		.	FALSE	FRAM	SINE,Alu
chr3	129152089	G	A	0.00154	MBD4	-	FALSE
chr1	10517290	T	C	0.00437		.	FALSE	AluJr	SINE,Alu
chr7	20178562	T	C	1.84789E-06	MACC1,LOC101927668	-	TRUE	AluY	SINE,Alu
chr2	217366195	C	A	0.00929		.	FALSE
chr3	4403394	A	G	0.00388	SUMF1	-	FALSE
chr1	1337841	C	A	0.00186	MRPL20	-	FALSE
chr17	28513176	G	A	0.00996	NSRP1	+	FALSE	AluJr	SINE,Alu
chr1	78483452	C	T	0.00045	DNAJB4	+	FALSE	L1MB7	SINE,Alu
chr3	121154974	T	C	0.00183	POLQ	-	FALSE
chr4	177252238	A	G	0.00061	SPCS3	+	TRUE
chr1	21102501	G	A	0.00148	HP1BP3	-	FALSE
chr1	114227223	G	A	0.00699	MAGI3	+	FALSE
chr1	1595604	A	T	0.00233	CDK11B,SLC35E2B	-	FALSE	AluJr	SINE,Alu
chr16	2882267	G	C	0.00252	ZG16B	+	FALSE
chr1	10520178	T	C	2.78615E-06		.	FALSE	AluSx	SINE,Alu
chr1	89887603	C	T	0.00308	GBP1P1	+	FALSE
chr1	33149486	A	G	0.00528	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr19	24103987	A	G	1.84513E-07	ZNF726	+	TRUE	AluSg4	SINE,Alu
chr1	11119950	G	A	4.66412E-05	SRM	-	FALSE
chr1	6282420	T	C	0.00779	ICMT	-	TRUE	AluSz	SINE,Alu
chr6	71298639	A	G	0.00339		.	FALSE	AluSp	SINE,Alu
chr1	16891365	G	A	1.42078E-05	NBPF1	-	FALSE
chr3	172351006	C	G	6.14326E-06	NCEH1	-	FALSE
chr16	10624953	T	C	0.00056	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	19543352	T	C	0.00715	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr3	195435168	T	G	0.00111	LINC00969	+	FALSE
chr2	1637201	C	T	5.10703E-15	PXDN	-	FALSE
chr2	206983255	T	C	0.00246		.	FALSE	AluJb	SINE,Alu
chr1	65693725	C	T	0.00202	AK4	+	FALSE
chr17	5288082	A	G	0.00184	RABEP1	+	TRUE
chr2	128060859	T	A	0.00016	MAP3K2	-	FALSE
chr3	10192608	A	G	0.00030	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	117945042	G	A	0.00150	MAN1A2	+	FALSE
chr2	183622547	T	G	0.00346	DNAJC10	+	FALSE
chr9	89627066	A	G	0.00588	LOC440173	-	FALSE
chr17	62541203	G	A	0.00660	SMURF2	-	FALSE
chr1	204521631	A	G	0.00024	MDM4	+	TRUE	AluSg	SINE,Alu
chr1	120458004	A	T	0.00247	NOTCH2	-	FALSE
chr10	100177984	C	T	6.55965E-05	HPS1	-	FALSE
chr1	10520984	G	T	0.00305	DFFA	-	FALSE	AluY	SINE,Alu
chr1	1419690	A	G	0.00464	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr17	5288079	A	C	0.00085	RABEP1	+	FALSE
chr5	118174757	T	C	0.00032	DTWD2	-	TRUE	AluY	SINE,Alu
chr1	144917546	A	G	0.00614	NBPF20,PDE4DIP	+,-	FALSE
chr17	4928416	A	G	0.00941	KIF1C	+	TRUE	AluSz	SINE,Alu
chr1	145512123	A	G	3.10159E-05	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr2	174090320	T	A	0.00174	ZAK,MLK7-AS1	+,-	FALSE	AluSx	SINE,Alu
chr1	94335333	G	T	0.00510	DNTTIP2	-	FALSE
chr1	16918717	C	T	0.00550	NBPF1	-	FALSE

RBP	UBE2L3
Knock-Method	shRNA
RBP Family	Non-canonical_RBP
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR424JSU
Platform	HiSeq
Pubmed ID	32252787

UBE2L3 - Target Gene Network