RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr2	64119875	G	A	0.00781	VPS54	-	FALSE
chr1	52381354	G	T	0.00157	RAB3B	-	FALSE
chr1	51738627	A	G	0.00024	RNF11	+	FALSE
chr2	86251151	T	C	0.00763		.	FALSE	AluSx	SINE,Alu
chr2	37328075	T	C	0.00335		.	FALSE
chr1	160967890	T	C	0.00871	F11R	-	TRUE	AluSp	SINE,Alu
chr1	204525669	A	G	0.00169	MDM4	+	TRUE	AluSz	SINE,Alu
chr3	195701388	G	A	0.00274	SDHAP1	-	FALSE
chr12	64842974	C	A	0.00925		.	FALSE	AluSz	SINE,Alu
chr1	201488771	A	G	0.00062		.	FALSE	AluSq2	SINE,Alu
chr1	28836900	A	G	0.00018	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr1	33149443	A	G	0.00013	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr3	68685888	G	A	0.00280		.	FALSE
chr2	37330503	T	C	0.00177		.	FALSE	AluSq2	SINE,Alu
chr1	53359181	A	G	0.00699	ZYG11A	+	TRUE	AluSx	SINE,Alu
chr12	56510710	A	C	0.00050	RPL41	+	FALSE
chr1	19934930	T	C	0.00026	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr18	33831189	C	A	0.00763	MOCOS	+	FALSE
chr1	93803522	T	C	0.00163	CCDC18-AS1	-	TRUE	AluJr	SINE,Alu
chr1	16909216	G	C	0.00232	NBPF1	-	FALSE
chr1	10318652	C	G	0.00047	KIF1B	+	FALSE
chr1	10518037	T	C	0.00017		.	FALSE	AluJr	SINE,Alu
chr7	17384880	A	G	0.00027	AHR	+	TRUE	AluSc	SINE,Alu
chr2	37329261	T	C	0.00123		.	FALSE	AluJr4	SINE,Alu
chr6	32147696	G	A	6.22517E-06		.	FALSE
chr7	29962665	C	T	0.00059	SCRN1	-	FALSE
chr1	156256064	C	T	0.00619	SMG5,TMEM79	+,-	FALSE
chr1	160112392	G	A	0.00701	ATP1A2	+	FALSE	AluSx3	SINE,Alu
chr1	207219603	T	C	0.00429	YOD1	-	FALSE
chr4	57796758	T	A	6.82460E-05	REST	+	FALSE
chr1	12071680	A	G	5.54475E-07	MFN2	+	FALSE
chr2	101622883	T	A	0.00440	RPL31	+	FALSE
chr17	5288077	G	C	0.00066	RABEP1	+	FALSE
chr1	144053664	A	C	0.00050		.	FALSE
chr1	148004475	C	G	7.81276E-06	NBPF8	-	FALSE
chr1	24296849	T	C	0.00125		.	FALSE
chr2	234385276	T	C	0.00951	USP40	-	FALSE
chr3	10356760	G	A	0.00951	SEC13	-	FALSE	MIRb	SINE,Alu
chr6	33385535	A	G	0.00671		.	FALSE
chr1	40759231	A	G	0.00168	ZMPSTE24	+	FALSE
chr1	148251875	T	C	0.00436	NBPF8,NBPF14,NBPF9	-	FALSE
chr1	240255561	G	A	0.00224	FMN2	+	FALSE	(GGC)n	SINE,Alu
chr2	54858511	C	T	0.00124	SPTBN1	+	FALSE
chr3	10193797	A	G	0.00261	VHL	+	TRUE	AluSx	SINE,Alu
chr1	146649884	T	A	0.00338	PDIA3P1	+	FALSE
chr1	26755643	A	G	0.00068	LIN28A	+	FALSE	AluSc	SINE,Alu
chr3	15113736	T	C	0.00081	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	21100862	C	A	0.00012	HP1BP3	-	FALSE	(AC)n	SINE,Alu
chr1	27202960	T	C	0.00213		.	FALSE	AluSq2	SINE,Alu
chr2	242212177	C	T	2.31719E-05	HDLBP	-	FALSE
chr2	37330611	T	C	0.00835		.	FALSE	AluSq2	SINE,Alu
chr5	149823786	C	T	0.00327		.	FALSE
chr1	40537918	T	A	0.00773	CAP1	+	FALSE
chr1	10517306	T	C	0.00102		.	FALSE	AluJr	SINE,Alu
chr2	86249961	T	C	0.00262	LOC90784	-	TRUE	AluJr	SINE,Alu
chr1	10519936	T	C	0.00349		.	FALSE	AluJr	SINE,Alu
chr1	44818529	T	C	0.00310	ERI3	-	FALSE
chr1	94995411	C	A	0.00849	F3	-	FALSE	AluSx	SINE,Alu
chr7	44841239	T	A	0.00199	PPIA	+	FALSE
chr4	184238324	G	A	0.00870	WWC2	+	FALSE
chr2	97020049	T	C	0.00070	NCAPH	+	FALSE
chr1	94995585	G	A	0.00266	F3	-	FALSE	AluSx	SINE,Alu
chr1	38002251	G	C	0.00624	SNIP1	-	FALSE
chr4	6644457	G	A	0.00059	MRFAP1	+	FALSE
chr19	18475303	A	G	0.00757	PGPEP1	+	TRUE	AluSx1	SINE,Alu
chr3	39452123	G	A	0.00093	RPSA	+	FALSE
chr19	18477761	A	G	0.00461	PGPEP1	+	TRUE	AluJb	SINE,Alu
chr1	33150643	G	A	0.00606	SYNC,RBBP4	+,-	FALSE	AluJo	SINE,Alu
chr2	46808168	C	T	0.00377	RHOQ	+	FALSE
chr4	139086857	G	A	0.00809	SLC7A11-AS1,SLC7A11	+,-	FALSE
chr5	96368471	G	T	3.92809E-06		.	FALSE
chr17	1683647	T	C	0.00763	SMYD4	-	TRUE	AluJb	SINE,Alu
chr5	17276055	T	C	0.00784	BASP1	+	FALSE	(TC)n	SINE,Alu
chr1	104097685	C	T	0.00028	RNPC3,AMY2B	+	FALSE
chr3	53319203	C	G	0.00453	DCP1A	-	FALSE
chr2	208619377	A	G	0.00769	CCNYL1	+	TRUE	FAM	SINE,Alu
chr1	89447882	A	G	0.00103	KYAT3,RBMXL1	-	FALSE
chr6	114178850	G	C	0.00045	MARCKS	+	FALSE	(TGCCGC)n	SINE,Alu
chr1	234542410	C	A	0.00832	TARBP1	-	FALSE
chr1	32697085	T	C	0.00366	EIF3I	+	FALSE	AluSp	SINE,Alu
chr4	76568479	T	A	0.00825	G3BP2	-	FALSE
chr9	137330709	G	T	6.64722E-05	RXRA	+	FALSE	(GCTG)n	SINE,Alu
chr1	9160958	T	C	3.06099E-05		.	FALSE	AluJb	SINE,Alu
chr11	93466866	G	T	0.00559	MIR1304	-	FALSE	AluJr	SINE,Alu
chr4	66439443	T	C	0.00593	EPHA5	-	FALSE
chr4	89181451	T	C	8.32748E-05	PPM1K	-	TRUE	AluSx1	SINE,Alu
chr2	102484205	T	A	0.00434	MAP4K4	+	FALSE
chr7	157129834	C	G	1.26796E-05	DNAJB6	+	FALSE
chr4	56291623	G	T	0.00490	TMEM165	+	FALSE
chr1	92941357	A	G	0.00296	GFI1	-	FALSE
chr1	16890644	C	T	0.00533	NBPF1	-	FALSE
chr2	202252539	G	A	0.00293	TRAK2	-	FALSE
chr3	156258283	T	C	0.00071	SSR3	-	TRUE	AluYk3	SINE,Alu
chr1	78483452	C	T	0.00045	DNAJB4	+	FALSE	L1MB7	SINE,Alu
chr1	109475706	T	C	0.00375	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr13	114748384	C	T	0.00050	RASA3	-	FALSE
chr1	94352570	G	T	0.00097	GCLM	-	FALSE	AluSx1	SINE,Alu
chr1	9161366	T	C	0.00189		.	FALSE	AluSx	SINE,Alu
chr14	95572111	A	C	0.00409	DICER1	-	FALSE
chr3	115528809	T	G	0.00087	LSAMP	-	FALSE
chr7	1199790	G	C	0.00049	ZFAND2A	-	FALSE
chr1	36068237	T	C	0.00974	PSMB2	-	TRUE	AluSc	SINE,Alu
chr4	185309401	A	G	0.00782	IRF2	-	FALSE
chr2	56611541	G	A	0.00521	CCDC85A	+	FALSE
chr1	7833544	T	C	0.00186	VAMP3	+	FALSE
chr1	3545192	C	G	0.00332	TPRG1L	+	FALSE
chr1	115299506	A	C	0.00076	CSDE1	-	FALSE
chr18	60998527	C	G	0.00078	KDSR	-	FALSE	(AGAGAGAC)n	SINE,Alu
chr4	165998694	T	C	0.00041	TMEM192	-	TRUE	AluSg	SINE,Alu
chr1	206566904	T	C	0.00322	SRGAP2	+	FALSE
chr1	1344749	A	G	0.00307		.	FALSE	AluSx1	SINE,Alu
chr4	13601337	G	A	7.28365E-09	BOD1L1	-	FALSE
chr1	67874697	T	C	0.00186	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr2	114220055	T	C	9.23000E-05	CBWD2	+	FALSE
chr2	217366196	T	A	0.00207		.	FALSE
chr2	170497651	C	T	0.00195		.	FALSE
chr17	57279257	A	G	0.00077	PRR11	+	TRUE	AluSq2	SINE,Alu
chr1	145512014	A	G	0.00023	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	28859264	T	G	0.00030	RCC1	+	FALSE
chr1	10518826	T	C	0.00292		.	FALSE	AluSx1	SINE,Alu
chr9	33039686	G	A	0.00542	DNAJA1	+	FALSE
chr3	47386062	T	A	4.63678E-05	KLHL18	+	FALSE
chr1	1721936	G	A	0.00731	GNB1	-	FALSE
chr5	40832551	A	T	0.00394	RPL37	-	FALSE
chr1	1337734	C	T	3.46713E-05	MRPL20	-	FALSE
chr4	41956413	C	T	0.00543	TMEM33	+	FALSE
chr1	6259433	G	A	0.00493	RPL22	-	FALSE	G-rich	SINE,Alu
chr1	327407	A	G	0.00752		.	FALSE
chr5	85916592	G	A	0.00018		.	FALSE
chr4	1205680	C	A	0.00247	CTBP1-AS,CTBP1	+,-	FALSE
chr19	11560483	A	G	0.00775	PRKCSH	+	TRUE	AluSx	SINE,Alu
chr1	46828734	T	C	0.00604	NSUN4	+	FALSE
chr12	19671149	C	T	0.00315	AEBP2	+	FALSE
chr1	6282224	T	C	0.00785	ICMT	-	TRUE	AluSz	SINE,Alu
chr14	74526976	T	C	0.00469	BBOF1,ALDH6A1	+,-	FALSE	AluJo	SINE,Alu
chr6	30692305	A	G	0.00500		.	FALSE	L2a	SINE,Alu
chr3	73116437	C	G	1.00237E-05	PPP4R2	+	FALSE
chr19	16663345	T	C	0.00304	SLC35E1	-	TRUE	AluSg	SINE,Alu
chr1	145284883	A	G	0.00329	NBPF20,NOTCH2NL	+	FALSE	L2a	SINE,Alu
chr6	159395409	T	C	0.00136		.	FALSE
chr2	37328034	T	C	8.99638E-05		.	FALSE
chr2	85548074	T	C	0.00724	TGOLN2	-	FALSE
chr3	48787052	T	C	0.00226	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr3	39137793	C	T	0.00363	WDR48	+	FALSE
chr1	9163383	T	C	0.00383		.	FALSE	AluSp	SINE,Alu
chr4	178256913	C	G	4.41796E-05	NEIL3	+	FALSE
chr1	209602381	G	A	0.00057	MIR205HG	+	FALSE	AluJb	SINE,Alu
chr3	49396588	T	C	0.00239	RHOA	-	FALSE
chr12	9464350	G	C	0.00209	LOC642846	+	FALSE
chr1	92862682	A	G	0.00381		.	FALSE	AluJr	SINE,Alu
chr1	118408218	C	A	0.00857	GDAP2	-	FALSE
chr1	120286837	A	G	0.00153	PHGDH	+	FALSE
chr3	156258389	T	C	0.00179	SSR3	-	TRUE	AluYk3	SINE,Alu
chr1	6283296	T	C	0.00106	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	145513017	A	G	0.00037	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	84971969	G	T	0.00626	GNG5	-	FALSE
chr2	232325426	A	T	0.00547	NCL	-	FALSE	(TCA)n	SINE,Alu
chr2	206987636	T	C	0.00093		.	FALSE	AluJb	SINE,Alu
chr2	99813020	A	G	0.00015	MRPL30	+	TRUE	AluJb	SINE,Alu
chr3	47036756	C	G	0.00091	NBEAL2	+	FALSE
chr1	38174665	G	A	0.00339	CDCA8	+	FALSE
chr2	11323079	T	A	0.00586	ROCK2	-	FALSE	(TA)n	SINE,Alu
chr9	21863618	T	C	0.00148	MTAP	+	FALSE	AluY	SINE,Alu
chr1	145688664	A	T	0.00087	NBPF20,NBPF10,RNF115	+	FALSE
chr2	37328082	T	C	1.18454E-08		.	FALSE
chr1	3731965	G	A	0.00209	CEP104	-	FALSE
chr1	71531596	A	G	0.00016	ZRANB2-AS1,ZRANB2	+,-	FALSE
chr1	92862896	A	G	6.86172E-05		.	FALSE	AluJr	SINE,Alu
chr4	39550558	T	C	0.00441	UGDH-AS1,SMIM14	+,-	FALSE	AluSx1	SINE,Alu
chr2	55516940	A	C	0.00389	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr6	13790848	T	C	0.00344	MCUR1	-	TRUE	AluSx1	SINE,Alu
chr12	3150859	C	T	0.00317		.	FALSE	(CCTCCCTG)n	SINE,Alu
chr1	145369709	A	G	0.00607	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr3	5258280	A	G	4.07938E-08	EDEM1	+	FALSE
chr4	187628394	G	A	0.00000	FAT1	-	FALSE
chr2	37328097	T	C	3.71887E-07		.	FALSE
chr16	15219677	A	G	0.00136	PDXDC1,PKD1P6-NPIPP1	+,-	FALSE
chr19	45406538	C	G	0.00119	TOMM40	+	FALSE
chr4	6644459	C	A	0.00109	MRFAP1	+	FALSE
chr19	23542157	T	C	0.00140	ZNF91	-	TRUE	AluY	SINE,Alu
chr1	95362514	G	T	0.00658	CNN3	-	FALSE
chr5	154194459	C	A	0.00832	LARP1	+	FALSE
chr1	37949224	C	T	7.78396E-10	ZC3H12A	+	FALSE
chr3	191110544	T	G	0.00031	CCDC50	+	FALSE	AluSz	SINE,Alu
chr14	64152516	T	C	0.00011	SGPP1	-	FALSE	(TA)n	SINE,Alu
chr4	10076860	G	A	1.69987E-09	WDR1	-	FALSE
chr10	98281496	T	C	0.00509	TM9SF3	-	FALSE
chr1	118503786	A	G	0.00135	SPAG17	-	FALSE	AluSx3	SINE,Alu
chr19	583145	G	A	0.00227	BSG	+	FALSE
chr3	194789330	G	T	0.00150	XXYLT1	-	FALSE	AluJr	SINE,Alu
chr14	62213927	C	A	0.00771	HIF1A,HIF1A-AS2	+,-	FALSE
chr1	226352498	T	G	0.00636	ACBD3	-	FALSE
chr1	36067752	T	C	0.00075	PSMB2	-	TRUE	AluSz	SINE,Alu
chr2	23865260	T	C	0.00262	KLHL29	+	FALSE
chr1	1419130	A	G	0.00685	ATAD3B	+	FALSE	AluSz	SINE,Alu
chr3	119212010	A	G	0.00685	POGLUT1	+	FALSE
chr1	6582701	T	C	1.54245E-05	NOL9	-	TRUE	AluSg	SINE,Alu
chr1	931935	T	C	0.00913		.	FALSE
chr7	2274221	T	C	0.00579	MRM2	-	TRUE	AluJr	SINE,Alu
chr1	186641127	A	T	0.00546	PTGS2	-	FALSE
chr2	8823958	G	A	0.00017	ID2	+	FALSE
chr5	150647736	G	T	0.00964	GM2A	+	FALSE	AluSc	SINE,Alu
chr1	85785549	T	C	0.00621	DDAH1	-	FALSE
chr8	41798912	T	C	0.00892	KAT6A	-	FALSE
chr1	31405694	G	A	0.00986	PUM1	-	FALSE
chr12	56510706	A	G	0.00053	RPL41	+	FALSE
chr6	33648144	C	T	0.00453	ITPR3	+	FALSE
chr12	124146569	A	G	0.00013	GTF2H3	+	TRUE	AluSq2	SINE,Alu
chr3	44791406	T	C	0.00598	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr5	53841240	A	G	0.00416	SNX18	+	FALSE
chr10	101992810	T	C	0.00456	CWF19L1	-	TRUE	AluJb	SINE,Alu
chr1	1595540	T	C	0.00830	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr15	85184841	T	C	0.00016	WDR73,SCAND2P	+,-	FALSE	AluSz	SINE,Alu
chr9	37503490	A	G	0.00612	POLR1E	+	TRUE	AluJb	SINE,Alu
chr1	184761162	T	C	0.00685	FAM129A	-	TRUE	AluJo	SINE,Alu
chr1	19934838	C	T	2.17786E-05	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr10	117823568	T	A	0.00483	GFRA1	-	FALSE	(ATC)n	SINE,Alu
chr1	29631909	A	G	0.00029	PTPRU	+	FALSE
chr2	37331125	T	C	0.00036		.	FALSE	AluSx1	SINE,Alu
chr1	145511991	A	G	0.00673	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	26608012	C	A	0.00564	SH3BGRL3	+	FALSE
chr5	134236311	A	T	0.00025	TXNDC15	+	FALSE	AluSq	SINE,Alu
chr3	57548976	A	G	0.00132	PDE12	+	TRUE	FRAM	SINE,Alu
chr1	109816462	C	T	0.00083	CELSR2	+	FALSE
chr10	75008731	T	C	8.90942E-06	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr1	24128467	C	T	0.00481	HMGCL	-	FALSE
chr1	11181327	C	T	0.00573	MTOR	-	FALSE
chr1	45280500	A	G	0.00857		.	FALSE	AluSx	SINE,Alu
chr4	2940164	T	C	2.22609E-06	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	6582558	T	C	0.00030	NOL9	-	TRUE	AluSx1	SINE,Alu
chr11	65404877	G	A	0.00106	PCNX3	+	FALSE
chr3	191075902	C	T	1.38271E-08	CCDC50	+	FALSE
chr1	28835934	A	G	0.00069	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr1	19566382	A	G	0.00513	LOC101927895,EMC1	+,-	FALSE
chr1	45976723	T	C	5.68535E-05	MMACHC,PRDX1	+,-	FALSE
chr3	160213317	T	A	0.00208	KPNA4	-	FALSE
chr4	128756737	A	G	8.66859E-06		.	FALSE	AluSx	SINE,Alu
chr6	28873868	T	C	0.00041		.	FALSE	AluJo	SINE,Alu
chr7	135291501	T	C	0.00627	NUP205	+	FALSE
chr5	6633042	C	T	0.00348	NSUN2	-	FALSE
chr2	128601464	T	C	0.00161		.	FALSE	AluJr	SINE,Alu
chr1	16929327	C	T	0.00315	NBPF1	-	FALSE	ERVL-E-int	SINE,Alu
chr2	160624383	A	T	0.00142	MARCH7	+	FALSE
chr19	12742290	A	G	0.00564		.	FALSE	AluSx	SINE,Alu
chr7	22983702	A	T	7.71363E-07	FAM126A	-	FALSE
chr6	31321915	A	G	0.00000		.	FALSE
chr3	181430144	C	T	0.00043	SOX2-OT,SOX2	+	FALSE
chr7	100958270	T	C	0.00087	LOC101927746,IFT22	+,-	FALSE
chr18	61565062	C	G	0.00207	SERPINB2	+	FALSE
chr1	153907287	G	C	0.00159	DENND4B	-	FALSE	(CTG)n	SINE,Alu
chr1	52306079	T	A	0.00606	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr3	88191444	A	C	0.00020	CGGBP1,ZNF654	+,-	FALSE
chr1	220232138	T	C	0.00011	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr1	145512944	A	G	0.00171	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	10520153	T	C	0.00999		.	FALSE	AluSx	SINE,Alu
chr1	36068196	T	C	0.00376	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	6948076	C	T	0.00221	CAMTA1	+	FALSE	L2a	SINE,Alu
chr1	220232143	T	C	7.81076E-05	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr6	52267967	A	C	0.00424	PAQR8	+	FALSE
chr1	16918734	G	C	0.00600	NBPF1	-	FALSE
chr2	65496187	G	A	0.00103	ACTR2	+	FALSE
chr1	109856378	C	A	0.00804	SORT1	-	FALSE
chr1	93616202	T	C	0.00194	TMED5	-	FALSE
chr16	74698535	T	C	0.00607	RFWD3	-	TRUE	AluSx3	SINE,Alu
chr1	35817025	T	A	0.00987	ZMYM4	+	FALSE
chr12	98942808	A	G	0.00019	TMPO	+	TRUE	AluSc	SINE,Alu
chr3	196557357	G	T	0.00615	PAK2	+	FALSE
chr12	100562935	G	T	0.00074	GOLGA2P5	-	FALSE	AluSg	SINE,Alu
chr1	202861470	C	A	0.00441	KLHL12	-	FALSE
chr1	43272841	A	T	0.00029	SVBP	-	FALSE

RBP	RPLP0
Knock-Method	shRNA
RBP Family	Ribosomal_L10
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR082YGI
Platform	HiSeq
Pubmed ID	32252787

RPLP0 - Target Gene Network