RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr10	79800439	A	T	0.00380	RPS24	+	FALSE
chr1	1345051	A	G	0.00816		.	FALSE	AluSg	SINE,Alu
chr1	115110683	A	C	0.00168	BCAS2	-	FALSE
chr1	148341981	T	C	0.00226	NBPF8,NBPF14,NBPF9	-	FALSE
chr1	145586403	G	T	0.00075	NBPF20,NBPF10,PIAS3	+	FALSE
chr10	15120275	T	C	0.00387	ACBD7	-	TRUE	L1PA7	SINE,Alu
chr1	179832748	G	C	7.50400E-12	TOR1AIP2	-	FALSE	FLAM_C	SINE,Alu
chr6	46128910	A	G	0.00782	ENPP5	-	FALSE	(GT)n	SINE,Alu
chr1	27202959	T	C	0.00653		.	FALSE	AluSq2	SINE,Alu
chr1	160967938	T	C	0.00270	F11R	-	TRUE	AluSp	SINE,Alu
chr3	49460407	C	T	0.00080	NICN1	-	FALSE	L2c	SINE,Alu
chr1	9162223	T	C	0.00997		.	FALSE	AluSx	SINE,Alu
chr3	122291688	A	G	0.00597	DTX3L	+	FALSE	AluSz	SINE,Alu
chr1	1152601	A	G	0.00075	SDF4	-	FALSE
chr2	99772813	A	G	0.00670	LIPT1	+	TRUE	AluSx1	SINE,Alu
chr8	146200271	T	C	0.00182	ZNF252P	-	TRUE	AluSc	SINE,Alu
chr1	19542679	T	C	0.00584	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr1	15896984	A	G	0.00297	DNAJC16	+	FALSE	FLAM_C	SINE,Alu
chr2	190617700	T	C	1.38394E-05	OSGEPL1	-	FALSE
chr14	62262587	T	C	0.00153	SNAPC1	+	FALSE	FLAM_C	SINE,Alu
chr1	45671430	A	T	0.00041	ZSWIM5	-	FALSE
chr4	2951804	A	G	7.08227E-08	NOP14-AS1,NOP14	+,-	FALSE
chr1	19545142	A	G	0.00071	LOC101927895,EMC1	+,-	FALSE
chr2	99812447	A	G	0.00501	MRPL30	+	TRUE	AluSx	SINE,Alu
chr1	6282400	T	C	0.00132	ICMT	-	TRUE	AluSz	SINE,Alu
chr2	234749258	T	C	0.00710	HJURP	-	FALSE
chr1	89447839	C	G	0.00589	KYAT3,RBMXL1	-	FALSE
chr1	32739982	G	A	0.00300	LCK	+	FALSE
chr3	189713205	T	C	4.97145E-05	P3H2	-	FALSE
chr1	90496244	C	T	0.00595	ZNF326	+	FALSE	AluJr	SINE,Alu
chr1	1498747	T	C	0.00847	SSU72	-	TRUE	AluSg7	SINE,Alu
chr1	35650162	C	A	0.00106	SFPQ	-	FALSE
chr2	109374952	A	G	0.00031	RANBP2	+	FALSE
chr1	10516656	C	T	0.00808		.	FALSE
chr1	10520439	T	C	0.00293		.	FALSE	AluSx1	SINE,Alu
chr1	10520174	T	C	0.00158		.	FALSE	AluSx	SINE,Alu
chrX	71492446	A	T	0.00281		.	FALSE
chr1	20976032	T	C	9.95086E-05	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr1	244871041	T	A	0.00590	DESI2	+	FALSE
chr6	42855957	A	G	0.00107	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	28835934	A	G	0.00069	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr1	16892135	G	A	0.00221	NBPF1	-	FALSE
chr19	58374130	C	T	0.00124	ZNF587	+	FALSE
chr1	46828460	C	T	0.00393	NSUN4	+	FALSE
chr5	74072648	T	A	0.00036	NSA2	+	FALSE
chr19	53914411	A	G	8.16883E-05	ZNF765	+	TRUE	AluSx	SINE,Alu
chr1	1337736	C	G	0.00012	MRPL20	-	FALSE
chr2	37327665	T	C	2.45403E-06		.	FALSE
chr1	16932428	C	G	0.00197	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr8	30536544	T	C	0.00122	GSR	-	TRUE	AluSp	SINE,Alu
chr1	44071221	G	A	0.00105	PTPRF	+	FALSE
chr2	206981832	T	C	0.00251		.	FALSE	AluJb	SINE,Alu
chr1	144614931	G	A	0.00469	NBPF20	+	FALSE
chr1	39924765	C	A	0.00303	MACF1	+	FALSE
chr1	145512024	A	G	0.00392	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr2	86251151	T	C	0.00882		.	FALSE	AluSx	SINE,Alu
chr1	228520973	C	G	0.00875	OBSCN	+	FALSE
chr7	44917278	T	C	0.00461	PURB	-	TRUE	AluSz	SINE,Alu
chr3	105295461	G	A	9.74520E-12	ALCAM	+	FALSE
chr16	10625049	T	C	1.15092E-05	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	36068295	T	C	0.00058	PSMB2	-	TRUE	AluSc	SINE,Alu
chr8	94744813	C	T	5.22032E-05	RBM12B	-	FALSE
chr1	120164545	T	G	0.00058	ZNF697	-	FALSE
chr1	12024235	C	T	0.00395	PLOD1	+	FALSE
chr1	6582868	T	C	0.00368	NOL9	-	TRUE	AluSg	SINE,Alu
chr2	128951766	A	G	0.00050	UGGT1	+	TRUE	AluSp	SINE,Alu
chr1	78483452	C	T	0.00045	DNAJB4	+	FALSE	L1MB7	SINE,Alu
chr20	35520223	T	C	0.00111	TLDC2	+	FALSE	AluSx3	SINE,Alu
chr6	150046601	T	C	0.00073	NUP43	-	TRUE	AluSq2	SINE,Alu
chr5	17276742	G	A	0.00320	BASP1	+	FALSE
chr1	1152310	C	T	0.00133	SDF4	-	FALSE
chr1	10519932	T	C	5.00916E-05		.	FALSE	AluJr	SINE,Alu
chr1	179829595	T	C	0.00115	TOR1AIP2	-	TRUE	AluJr	SINE,Alu
chr2	176791181	T	C	0.00063	LNPK	-	TRUE	MSTD	SINE,Alu
chr14	53242425	T	C	0.00473	GNPNAT1	-	TRUE	AluJo	SINE,Alu
chr14	75202512	A	G	0.00053	FCF1	+	TRUE	AluSc	SINE,Alu
chr7	12675713	T	C	0.00363	SCIN	+	FALSE
chr17	57279282	A	G	7.34157E-06	PRR11	+	TRUE	AluSq2	SINE,Alu
chr2	176792536	G	T	0.00211	LNPK	-	FALSE
chr1	152187945	C	T	9.69718E-05	HRNR	-	FALSE	(GCCAGA)n	SINE,Alu
chr1	46075187	A	C	0.00024	NASP	+	FALSE	A-rich	SINE,Alu
chr1	204521631	A	G	0.00024	MDM4	+	TRUE	AluSg	SINE,Alu
chr1	145369480	A	G	7.08400E-07	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr1	33149495	A	G	0.00675	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr9	131093963	A	G	0.00299	COQ4	+	TRUE	AluJo	SINE,Alu
chr2	20449068	A	G	0.00014	PUM2	-	FALSE
chr8	41401497	A	G	0.00051	LOC102723729,GINS4	+,-	FALSE	AluSq2	SINE,Alu
chr2	201774341	T	C	0.00073		.	FALSE	AluSz	SINE,Alu
chr1	77557891	T	C	0.00557	PIGK	-	FALSE
chr1	15909744	C	T	0.00225	AGMAT	-	FALSE
chr1	143399198	C	T	0.00146		.	FALSE
chr1	179852074	T	C	0.00033	TOR1AIP1	+	FALSE
chr9	17829	G	A	0.00142	WASH1	-	FALSE
chr1	9330740	G	C	0.00077	H6PD	+	FALSE
chr5	49692633	T	G	0.00808	EMB	-	FALSE
chr12	98943182	A	G	1.41026E-08	TMPO	+	TRUE	AluSz	SINE,Alu
chr1	118066459	A	G	0.00360	MAN1A2	+	FALSE
chr1	33149495	A	G	0.00421	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr4	1305799	C	T	0.00271	MAEA	+	FALSE
chr2	97020049	T	C	0.00070	NCAPH	+	FALSE
chr1	10520154	T	C	0.00380		.	FALSE	AluSx	SINE,Alu
chr1	36806071	G	A	0.00126	STK40	-	FALSE
chr1	204526611	A	G	0.00402	MDM4	+	TRUE	AluSx	SINE,Alu
chr2	37328034	T	C	8.99638E-05		.	FALSE
chr5	52388460	A	T	0.00034	ITGA2	+	FALSE
chr1	16889642	T	C	0.00017	NBPF1	-	TRUE
chr2	223765491	C	T	0.00689	ACSL3	+	FALSE
chr8	37351214	T	C	0.00109	LINC01605	-	FALSE
chr1	156564726	T	C	0.00995	GPATCH4	-	FALSE
chr1	145292925	C	T	0.00817	NBPF20	+	FALSE
chr3	195395399	G	A	0.00556	SDHAP2	+	FALSE
chr1	10517659	T	C	0.00513		.	FALSE	AluSx1	SINE,Alu
chr1	148251009	T	C	0.00065	NBPF8,NBPF14,NBPF9	-	TRUE
chr1	145689717	A	G	7.73781E-05	NBPF20,NBPF10	+	TRUE	AluJb	SINE,Alu
chr2	136541072	T	C	0.00496	UBXN4	+	FALSE
chr1	28835937	A	G	0.00061	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr1	93826775	T	C	0.00172	DR1	+	FALSE
chr3	98515569	C	T	3.10862E-15	DCBLD2	-	FALSE
chr1	16912138	A	G	0.00197	NBPF1	-	FALSE
chr1	33960062	A	G	0.00437	ZSCAN20	+	FALSE
chr3	44791355	T	C	0.00468	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr11	769889	T	C	0.00211	PDDC1	-	TRUE	AluY	SINE,Alu
chr6	33269307	T	C	0.00645		.	FALSE	AluSx	SINE,Alu
chr6	32121594	T	C	0.00104		.	FALSE
chr2	37328087	T	C	0.00335		.	FALSE
chr1	144931330	C	T	0.00066	NBPF20,PDE4DIP	+,-	FALSE
chr2	24223159	A	G	0.00717	UBXN2A	+	TRUE	AluSc	SINE,Alu
chr15	41597669	A	G	0.00087		.	FALSE	AluSz6	SINE,Alu
chr3	196670092	C	G	0.00393	NCBP2-AS2	+	FALSE
chr1	201975173	G	T	0.00053	RNPEP	+	FALSE
chr2	37328013	T	C	0.00010		.	FALSE
chr1	31838550	T	A	0.00595	FABP3	-	FALSE
chr1	28833494	G	A	0.00122	SNHG3,RCC1	+	FALSE
chr2	9629953	C	A	0.00042	ADAM17	-	FALSE
chr14	65400786	T	G	0.00077	CHURC1-FNTB,CHURC1	+	FALSE	AluSx	SINE,Alu
chr1	148561089	T	C	0.00011	NBPF15	+	FALSE
chr1	109746728	A	G	0.00171	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr1	27108245	T	C	0.00265	ARID1A	+	FALSE
chr1	46075791	A	G	0.00120	NASP	+	TRUE	AluSx4	SINE,Alu
chr8	145139727	C	T	0.00458	GPAA1	+	FALSE
chr1	14599	T	A	0.00304	WASH7P	-	FALSE
chr17	42876808	T	C	0.00147	GJC1	-	TRUE	AluSz6	SINE,Alu
chr1	171501831	A	G	0.00037	PRRC2C	+	FALSE
chr11	65404868	T	G	0.00022	PCNX3	+	FALSE
chr7	75045694	C	T	1.64957E-05	NSUN5P1	+	FALSE
chrX	77083828	T	C	1.52468E-05	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	9160958	T	C	0.00108		.	FALSE	AluJb	SINE,Alu
chr6	90344605	T	C	0.00013	LYRM2	-	TRUE	AluSz6	SINE,Alu
chr1	11710798	T	G	0.00328	FBXO2	-	FALSE	(CCT)n	SINE,Alu
chr1	46075612	A	G	0.00153	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	65298626	T	A	0.00580	RAVER2	+	FALSE	X12_DNA	SINE,Alu
chr1	36690599	A	G	0.00406	THRAP3	+	FALSE
chr1	184761312	T	C	0.00308	FAM129A	-	TRUE	AluJo	SINE,Alu
chr1	100489452	A	G	0.00741	SLC35A3	+	TRUE	AluSc	SINE,Alu
chr1	6354955	G	A	0.00282	ACOT7	-	FALSE
chr1	15394286	C	G	0.00260	KAZN	+	FALSE
chr1	10520180	T	C	0.00959		.	FALSE	AluSx	SINE,Alu
chr12	125513906	C	A	0.00464		.	FALSE	AluSx1	SINE,Alu
chr1	53291382	A	G	0.00691	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	85785548	C	T	0.00353	DDAH1	-	FALSE
chr3	98518155	A	T	0.00777	DCBLD2	-	FALSE
chr5	79923793	T	C	0.00074	DHFR	-	TRUE	AluSp	SINE,Alu
chr5	53841240	A	G	0.00416	SNX18	+	FALSE
chr1	45244432	T	A	0.00154		.	FALSE
chr1	150704486	T	C	0.00157	CTSS	-	TRUE	AluJo	SINE,Alu
chr12	120898554	A	G	0.00124	GATC	+	TRUE	AluY	SINE,Alu
chr9	132573290	C	T	0.00881	TOR1B	+	FALSE
chr1	151374016	A	G	0.00822	PSMB4	+	FALSE
chr2	206987229	T	C	0.00743		.	FALSE	AluSx	SINE,Alu
chr1	19578192	G	A	0.00246	MRTO4	+	FALSE
chr1	144053662	T	G	0.00173		.	FALSE
chr1	32697109	A	G	0.00015	EIF3I	+	FALSE	AluSp	SINE,Alu
chr3	32997308	A	G	0.00082		.	FALSE	AluY	SINE,Alu
chr9	115447527	T	C	0.00200	INIP	-	TRUE	AluJb	SINE,Alu
chr1	16933135	G	T	0.00937	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	8412989	A	G	0.00225	RERE	-	FALSE
chr16	10625320	T	C	0.00923	EMP2	-	TRUE	AluSx	SINE,Alu
chr1	244869241	C	A	0.00213	DESI2	+	FALSE
chr5	79923424	T	C	0.00054	DHFR	-	TRUE	AluJr	SINE,Alu
chr3	48787051	T	C	0.00105	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr10	15120179	T	C	3.12210E-06	ACBD7	-	FALSE	L1PA7	SINE,Alu
chr10	77157784	C	T	0.00027	ZNF503	-	FALSE	(T)n	SINE,Alu
chr11	44641025	G	A	0.00850	CD82	+	FALSE
chr9	136209399	A	T	0.00011	MED22	-	FALSE
chr1	20978516	T	C	0.00774	PINK1-AS,DDOST	-	FALSE	AluY	SINE,Alu
chr1	9740894	C	T	0.00097	PIK3CD,PIK3CD-AS2	+,-	FALSE	MLT1F1	SINE,Alu
chr1	144931330	C	T	0.00295	NBPF20,PDE4DIP	+,-	FALSE
chr6	28873868	T	C	0.00041		.	FALSE	AluJo	SINE,Alu
chr1	19447843	C	G	0.00345	UBR4	-	FALSE
chr2	128602967	T	G	0.00026		.	FALSE	AluSp	SINE,Alu
chr2	55516903	G	A	3.31807E-05	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr1	205687354	T	C	0.00012	NUCKS1	-	FALSE	(T)n	SINE,Alu
chr2	201774279	T	C	9.55391E-05		.	FALSE	AluSz	SINE,Alu
chr10	101992425	T	C	0.00406	CWF19L1	-	TRUE	AluSq2	SINE,Alu
chr6	43582750	A	G	0.00844	POLH	+	TRUE	AluSx1	SINE,Alu
chr1	10520767	T	C	5.51501E-05	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	11979809	A	C	0.00744	KIAA2013	-	FALSE
chr1	168220364	A	G	6.18665E-05		.	FALSE	AluSz6	SINE,Alu
chr3	195243002	C	A	0.00358	PPP1R2	-	FALSE
chr1	204526631	A	G	0.00568	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	7980667	T	C	0.00584	TNFRSF9	-	TRUE	AluJb	SINE,Alu
chr19	13883923	A	G	0.00493	MRI1	+	TRUE	AluSz	SINE,Alu
chr1	6308456	G	A	0.00169	GPR153	-	FALSE
chr1	5937327	C	T	0.00703	NPHP4	-	FALSE
chr10	117823566	G	T	0.00433	GFRA1	-	FALSE	(ATC)n	SINE,Alu
chr2	37329238	T	C	0.00754		.	FALSE	AluJr4	SINE,Alu
chr1	79125148	G	A	0.00203	IFI44	+	FALSE
chr1	117530217	C	T	0.00048	PTGFRN	+	FALSE
chr1	9740896	C	T	0.00078	PIK3CD,PIK3CD-AS2	+,-	FALSE	MLT1F1	SINE,Alu
chr1	16889563	C	A	0.00090	NBPF1	-	FALSE
chr1	203839215	T	A	0.00692	SNRPE	+	FALSE
chr2	198255334	A	T	0.00551		.	FALSE
chr1	160966351	T	C	0.00023	F11R	-	TRUE	AluSg	SINE,Alu
chr1	26161104	C	A	0.00030	AUNIP	-	FALSE	AluSc8	SINE,Alu
chr2	70131954	G	C	0.00370	SNRNP27	+	FALSE

RBP	CPSF7
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR222LRL
Platform	HiSeq
Pubmed ID	32252787

CPSF7 - Target Gene Network