RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr2	85548854	T	C	0.00097	TGOLN2	-	FALSE
chr1	186390303	A	C	0.00455	C1orf27	+	FALSE	L1ME3F	SINE,Alu
chr5	159520661	T	C	0.00776	PWWP2A	-	FALSE
chr1	117945042	G	A	0.00150	MAN1A2	+	FALSE
chr16	19715543	T	C	0.00879		.	FALSE	AluSg	SINE,Alu
chr2	97884961	G	A	0.00668	ANKRD36	+	FALSE
chr1	53708530	T	C	9.40494E-05	LRP8	-	FALSE	(TA)n	SINE,Alu
chr12	98943202	A	G	6.48893E-05	TMPO	+	TRUE	AluSz	SINE,Alu
chr2	37328016	T	C	5.08368E-07		.	FALSE
chr1	16953672	C	T	0.00243	CROCCP2	-	FALSE
chr1	225706943	C	T	0.00229	ENAH	-	FALSE
chr1	120163247	T	C	0.00010	ZNF697	-	FALSE
chr2	101186088	C	T	0.00817	PDCL3	+	FALSE
chr2	128602967	T	G	0.00026		.	FALSE	AluSp	SINE,Alu
chrX	16781156	A	G	0.00061		.	FALSE	AluJo	SINE,Alu
chr4	2940265	T	C	0.00413	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr5	74072634	T	A	0.00187	NSA2	+	FALSE
chr1	165370475	G	C	0.00256	RXRG	-	FALSE
chr7	2650926	G	A	0.00306	IQCE	+	FALSE
chr11	118661811	T	G	0.00582	DDX6	-	FALSE
chr1	109535117	C	T	0.00211	WDR47	-	FALSE
chr1	145100851	A	G	0.00066	NBPF20,SEC22B	+	FALSE	AluSg4	SINE,Alu
chr4	39550739	T	C	0.00231	UGDH-AS1,SMIM14	+,-	FALSE	AluSx1	SINE,Alu
chr1	6283305	T	C	0.00129	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	67874696	T	C	0.00012	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	156613401	T	C	5.47226E-05	BCAN	+	FALSE
chr1	225683180	G	T	0.00076	ENAH	-	FALSE
chr1	118408218	C	A	0.00857	GDAP2	-	FALSE
chr9	125609941	G	A	0.00043		.	FALSE
chr12	52710721	G	C	0.00519	KRT83	-	FALSE
chr1	46751319	G	A	0.00085	LRRC41	-	FALSE
chr1	94351065	A	T	0.00142	GCLM	-	FALSE
chr2	152132130	A	G	6.12116E-05	NMI	-	FALSE
chr1	45279903	C	T	0.00052		.	FALSE	(TCTT)n	SINE,Alu
chr5	37290323	T	C	0.00029		.	FALSE	AluSz	SINE,Alu
chr1	6283306	T	C	0.00558	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	184762524	T	C	0.00260	FAM129A	-	TRUE	AluSz	SINE,Alu
chr3	196079390	T	C	2.00948E-06		.	FALSE	AluSx	SINE,Alu
chr8	1730500	A	G	3.50527E-05	CLN8	+	TRUE	AluSx1	SINE,Alu
chr4	57326873	A	G	0.00034	PAICS	+	TRUE	AluSx1	SINE,Alu
chr14	63841400	A	C	0.00122	PPP2R5E	-	FALSE
chr9	130209956	A	T	0.00221	RPL12	-	FALSE
chr1	214638296	G	A	3.68085E-08	PTPN14	-	FALSE
chr1	31532379	A	G	0.00061	PUM1	-	FALSE
chr1	32953214	A	G	0.00837	ZBTB8B	+	TRUE	AluSz	SINE,Alu
chr12	124146100	A	G	4.66106E-08	GTF2H3	+	TRUE	AluSx4	SINE,Alu
chr4	17803604	T	C	0.00414	DCAF16	-	TRUE	AluY	SINE,Alu
chr1	205272926	C	T	0.00690	NUAK2	-	FALSE
chr1	19670860	A	G	0.00419	CAPZB	-	FALSE
chr9	137330709	G	T	0.00965	RXRA	+	FALSE	(GCTG)n	SINE,Alu
chr4	1305799	C	T	0.00730	MAEA	+	FALSE
chr9	137330716	A	C	0.00058	RXRA	+	FALSE
chr16	67715404	T	C	0.00102	GFOD2	-	TRUE	AluSz	SINE,Alu
chr3	73112378	A	G	0.00261	PPP4R2,EBLN2	+	FALSE
chr1	236716959	C	T	0.00727	HEATR1	-	FALSE
chr12	990912	A	C	0.00244	WNK1	+	FALSE
chr1	95658346	T	A	0.00961	TMEM56-RWDD3,LOC101928118,TMEM56	+,-	FALSE
chr4	248996	A	G	0.00123	ZNF876P	+	TRUE	AluYk3	SINE,Alu
chr14	52906081	T	G	0.00602	TXNDC16	-	FALSE
chr2	74090062	T	G	0.00248	STAMBP	+	FALSE
chr1	120539687	T	C	0.00179	NOTCH2	-	FALSE
chr1	206635247	C	T	0.00291	SRGAP2	+	FALSE	(AC)n	SINE,Alu
chr2	113289701	T	G	0.00994	TTL	+	FALSE
chr1	158066834	A	G	0.00609	KIRREL	+	FALSE
chr1	42884086	G	T	0.00040	RIMKLA	+	FALSE
chr2	99812447	A	G	0.00587	MRPL30	+	TRUE	AluSx	SINE,Alu
chr4	16040617	C	T	0.00032	PROM1	-	FALSE
chr7	65844062	T	A	0.00733	LINC00174	-	FALSE
chr1	25893928	T	A	0.00388	LDLRAP1	+	FALSE
chr1	22854931	C	A	0.00238	ZBTB40	+	FALSE	A-rich	SINE,Alu
chr2	98090925	T	C	0.00056	LOC100506076	-	FALSE	L1PREC2	SINE,Alu
chr5	154194459	C	A	0.00832	LARP1	+	FALSE
chr3	52028445	C	T	0.00934	RPL29	-	FALSE
chr1	16957414	C	T	0.00708		.	FALSE
chr1	44459935	T	C	0.00953	CCDC24	+	FALSE	AluJb	SINE,Alu
chr16	11929653	C	T	0.00333	RSL1D1	-	FALSE	LTR14B	SINE,Alu
chr17	8378932	A	G	0.00372	MYH10	-	FALSE
chr5	44826677	G	T	0.00941		.	FALSE	(T)n	SINE,Alu
chr1	21544447	G	A	0.00115	ECE1	-	FALSE
chr3	179117128	T	C	0.00112	GNB4	-	TRUE	AluSz	SINE,Alu
chr1	16944809	G	C	9.47535E-05	CROCCP2	-	FALSE
chr1	25688276	A	G	0.00015	TMEM50A	+	FALSE
chr19	41220529	C	T	0.00175	COQ8B	-	FALSE
chr1	1549354	G	A	0.00383		.	FALSE	HAL1	SINE,Alu
chr1	97543764	C	T	0.00353	DPYD	-	FALSE
chr12	56510559	A	G	0.00137	RPL41	+	FALSE
chr1	3730332	T	C	9.76659E-06	CEP104	-	TRUE	AluSx3	SINE,Alu
chr1	16918717	C	T	0.00550	NBPF1	-	FALSE
chr1	28661653	A	G	0.00483	MED18	+	TRUE	AluSg	SINE,Alu
chr2	9558812	G	T	0.00427	ITGB1BP1	-	FALSE
chr5	31554465	A	T	1.69098E-06	C5orf22	+	FALSE
chr1	37945905	A	T	0.00038	ZC3H12A	+	FALSE
chr1	28835937	A	G	0.00025	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr1	87200770	C	T	0.00623	SH3GLB1	+	FALSE
chr1	230416399	G	T	5.37638E-05	GALNT2	+	FALSE
chr1	53359182	A	G	0.00321	ZYG11A	+	TRUE	AluSx	SINE,Alu
chr11	126147697	G	A	0.00237	FOXRED1	+	FALSE
chr7	116437206	A	G	0.00118	MET	+	FALSE
chr4	2940430	T	C	2.47251E-05	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	16529004	A	C	3.00007E-07	ARHGEF19	-	FALSE
chr15	40954864	A	G	0.00636	KNL1	+	TRUE
chr1	26449340	G	A	0.00711	PDIK1L	+	FALSE
chr1	89570148	A	G	0.00084		.	FALSE
chr1	148004440	C	A	0.00082	NBPF8	-	FALSE
chr2	242164677	A	G	0.00117	ANO7	+	TRUE	AluSg	SINE,Alu
chr1	19543309	T	C	0.00769	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	172547465	A	G	0.00725	SUCO	+	FALSE
chr19	9672346	T	C	0.00222		.	FALSE	AluJr	SINE,Alu
chr2	206986926	T	C	0.00913		.	FALSE	AluJr	SINE,Alu
chr1	45975628	A	G	0.00465	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr1	16927369	C	T	0.00943	NBPF1	-	FALSE
chr1	33148691	A	G	2.12433E-06	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr9	116022893	C	A	0.00060	SLC31A1	+	FALSE
chr3	121507231	A	T	0.00042	IQCB1	-	FALSE
chr4	165999189	T	C	0.00614	TMEM192	-	TRUE	FLAM_C	SINE,Alu
chr1	67874689	T	C	0.00112	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr3	32567573	G	A	0.00320	DYNC1LI1	-	FALSE	(AT)n	SINE,Alu
chr1	35658260	C	G	0.00477	SFPQ	-	FALSE
chr1	116237273	A	G	0.00309	VANGL1	+	FALSE
chr2	85773595	T	C	0.00774	GGCX	-	TRUE	AluSx1	SINE,Alu
chr1	6282215	T	C	0.00187	ICMT	-	TRUE	AluSz	SINE,Alu
chr15	59428230	G	A	0.00891	MYO1E	-	FALSE	MLT1B	SINE,Alu
chr1	569981	C	A	4.36771E-05		.	FALSE
chr4	187628395	T	A	0.00000	FAT1	-	FALSE
chr1	145509570	A	G	0.00037	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr16	88789702	G	A	0.00125	PIEZO1	-	FALSE
chr3	185646406	A	T	0.00023	TRA2B	-	FALSE
chr1	109239334	A	T	0.00035	PRPF38B	+	FALSE
chr1	9162932	A	T	0.00635		.	FALSE
chr2	37330517	T	C	0.00324		.	FALSE	AluSq2	SINE,Alu
chr3	88191439	A	C	0.00657	CGGBP1,ZNF654	+,-	FALSE
chr3	42591446	A	G	0.00012	SEC22C	-	FALSE
chr12	51325280	A	G	0.00370	METTL7A	+	TRUE	AluSq2	SINE,Alu
chr5	174956493	T	A	0.00466	SFXN1	+	FALSE
chr1	1595538	T	C	0.00718	CDK11B,SLC35E2B	-	FALSE	AluJr	SINE,Alu
chr1	182809019	G	A	0.00274	DHX9	+	FALSE
chr1	25894471	G	A	0.00778	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr2	99812311	A	G	0.00016	MRPL30	+	TRUE	AluSx	SINE,Alu
chr1	39988084	G	A	0.00060	BMP8A,PPIEL	+,-	FALSE
chr1	46075663	A	G	0.00068	NASP	+	TRUE	AluSx4	SINE,Alu
chr4	152020781	C	T	0.00925	RPS3A	+	FALSE
chr1	38326700	T	C	5.61462E-05	INPP5B	-	TRUE	AluJr	SINE,Alu
chr1	148932848	A	G	0.00715	LOC645166	+	FALSE
chr15	41593269	A	G	0.00196		.	FALSE	AluSz6	SINE,Alu
chr3	9517369	C	T	0.00395	SETD5	+	FALSE
chr1	145511929	A	G	0.00028	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	212277581	C	T	4.20326E-05	DTL	+	FALSE
chr17	61502458	T	A	0.00317	TANC2	+	FALSE
chr1	77759578	A	G	0.00492	AK5	+	FALSE
chr1	89447720	G	A	0.00521	KYAT3,RBMXL1	-	FALSE
chr3	14986111	T	C	0.00999	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	179327011	A	G	0.00930	SOAT1	+	TRUE
chr17	65335356	T	C	5.15611E-11	PSMD12	-	TRUE	AluSx	SINE,Alu
chr1	26608012	C	A	0.00564	SH3BGRL3	+	FALSE
chr22	17129526	A	G	0.00485	TPTEP1	+	TRUE	AluSz	SINE,Alu
chr1	47844500	T	G	0.00596	CMPK1	+	FALSE
chr3	14986138	T	C	1.80576E-11	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr3	160969268	C	T	0.00835	NMD3	+	FALSE
chr1	26161104	C	A	0.00030	AUNIP	-	FALSE	AluSc8	SINE,Alu
chr8	25272446	A	T	0.00405	DOCK5	+	FALSE
chr4	2940164	T	C	0.00381	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr19	19791270	A	G	0.00732	ZNF101	+	TRUE	AluSq2	SINE,Alu
chr1	20238573	T	C	0.00204	OTUD3	+	FALSE
chr1	19542463	T	C	0.00447	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	144932197	T	A	0.00430	NBPF20,PDE4DIP	+,-	FALSE
chr3	172115474	A	G	0.00012	FNDC3B	+	FALSE	(A)n	SINE,Alu
chr1	10517550	T	C	0.00457		.	FALSE	AluSx1	SINE,Alu
chr1	179042482	A	G	0.00079	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr10	75009651	T	C	0.00558	DNAJC9-AS1,MRPS16	+,-	FALSE	AluSc	SINE,Alu
chr16	66923393	A	G	0.00228	PDP2	+	TRUE	AluSz	SINE,Alu
chr19	63633	C	T	0.00999	WASH5P	-	FALSE	MLT1K	SINE,Alu
chr4	24578019	G	A	0.00000	DHX15	-	FALSE
chr1	28662212	A	G	0.00098	MED18	+	TRUE	AluSq2	SINE,Alu
chr12	9464350	G	C	0.00209	LOC642846	+	FALSE
chr1	998582	G	C	0.00073		.	FALSE
chr18	11852612	G	T	0.00410	GNAL,CHMP1B	+	FALSE	(T)n	SINE,Alu
chr2	112252629	A	C	0.00107	MIR4435-2HG	-	FALSE
chr2	191745653	T	G	0.00030	GLS	+	FALSE
chr1	46076481	A	G	0.00144	NASP	+	TRUE	AluSx	SINE,Alu
chr1	67874859	T	C	1.49998E-05	SERBP1	-	TRUE	AluSx	SINE,Alu
chr1	36529575	A	G	2.40551E-05		.	FALSE	AluJr	SINE,Alu
chr1	53291435	A	G	0.00790	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr2	152334389	A	G	0.00308		.	FALSE	AluSq	SINE,Alu
chr9	85861561	C	T	0.00287	FRMD3	-	FALSE	(TC)n	SINE,Alu
chr1	3731965	G	A	0.00209	CEP104	-	FALSE
chr4	165998149	T	C	0.00057	TMEM192	-	TRUE	AluSx	SINE,Alu
chr1	45987539	C	A	0.00660	PRDX1	-	FALSE
chr3	195961254	C	T	0.00119		.	FALSE
chr3	40503557	T	C	0.00487	RPL14	+	FALSE
chr1	6259025	C	T	0.00700	RPL22	-	FALSE
chr1	100615003	G	A	0.00046	TRMT13,LRRC39	+,-	FALSE
chr7	75958147	T	A	0.00917	YWHAG	-	FALSE
chr1	16892274	A	T	0.00371	NBPF1	-	FALSE
chr6	13789470	T	C	0.00166	MCUR1	-	TRUE	AluSg	SINE,Alu
chr1	6283439	T	C	0.00786	ICMT	-	TRUE	AluSx3	SINE,Alu
chr12	133297904	A	G	8.99170E-13	PGAM5	+	TRUE	AluJo	SINE,Alu
chr2	202031356	C	T	0.00247	CFLAR	+	FALSE	SVA_A	SINE,Alu
chr15	41590972	A	G	2.40282E-05	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr17	79004271	T	C	0.00200	BAIAP2-AS1	-	FALSE	AluSq2	SINE,Alu
chr1	6582689	T	C	4.44823E-05	NOL9	-	TRUE	AluSg	SINE,Alu
chr1	19542693	T	C	0.00024	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr1	110950295	C	A	0.00359	LAMTOR5	-	FALSE
chr1	110951224	A	G	0.00352	LAMTOR5-AS1	+	TRUE	AluJr	SINE,Alu
chr2	160625969	T	C	0.00527	LY75-CD302,CD302	-	TRUE	AluSz	SINE,Alu
chr7	137561078	G	A	0.00558	CREB3L2	-	FALSE	(GT)n	SINE,Alu
chr1	71531596	A	G	1.07667E-05	ZRANB2-AS1,ZRANB2	+,-	FALSE
chr1	235392546	T	C	0.00312	ARID4B	-	FALSE

RBP	SSB
Knock-Method	shRNA
RBP Family	RRM_3
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR891AXF
Platform	HiSeq
Pubmed ID	32252787

SSB - Target Gene Network