Dataset Overview
RBP
SRSF5
Knock-Method
shRNA
RBP Family
RRM_1
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR781YNI
Platform
HiSeq
Pubmed ID
32252787
SRSF5 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of SRSF5
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1BG
9.32
5.07
-0.78669
1.70745E-08
1.53006E-07
A1CF
29.34
38.17
0.35258
1.33253E-05
6.81409E-05
A2M
2342.22
2728.95
0.34154
1.72171E-05
8.56423E-05
AAAS
28.52
19.03
-0.46877
9.64975E-06
5.10136E-05
AADAC
0.71
1.22
1.07803
0.00131
0.00420
AAK1
2.94
3.52
0.59258
6.97615E-06
3.81100E-05
AAR2
19.08
10.97
-0.68188
1.16749E-11
1.62472E-10
AARS
40.96
87.86
1.22019
4.70127E-34
4.31892E-32
AARS2
5.21
3.45
-0.43810
0.00015
0.00060
AASDHPPT
15.99
13.7
-0.31146
0.00292
0.00847
Showing 1 to 10 of 6,781 entries
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Function Analysis of Target Genes of SRSF5
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCC2
101556543_101556610_101554169_101554225_101556853_101557853
0.00000
0.154
DataSet_01_179
View details
ABCC2
101576820_101576968_101572774_101572901_101577064_101577156
0.00055
0.247
DataSet_01_179
View details
ABCC2
101581647_101581686_101578845_101579026_101590063_101590190
0.00188
0.033
DataSet_01_179
View details
ABCC2
101576820_101576911_101572774_101572901_101577064_101577156
0.00617
0.166
DataSet_01_179
View details
ABCC2
101576820_101576953_101572774_101572901_101577064_101577241
0.00454
0.139
DataSet_01_179
View details
ACADVL
7127464_7127542_7127131_7127388_7127639_7127712
0.00000
-0.255
DataSet_01_179
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ACADVL
7127464_7127562_7127131_7127388_7127639_7127712
0.00026
-0.042
DataSet_01_179
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ACADVL
7124856_7125001_7124242_7124377_7125270_7125398
0.00352
-0.039
DataSet_01_179
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ACADVL
7124837_7125001_7124242_7124377_7125270_7125384
0.00379
-0.059
DataSet_01_179
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ACIN1
23559190_23559310_23550956_23551045_23559730_23559842
0.00817
0.103
DataSet_01_179
View details
Showing 1 to 10 of 253 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABI2
204255768_204255866_204259422_204259569_204244930_204245107
0.00231
0.305
DataSet_01_179
View details
ACAA1
38169276_38169357_38170780_38170879_38168000_38168191
0.00712
0.076
DataSet_01_179
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ACLY
40052872_40052902_40054001_40054092_40049285_40049427
0.00570
0.109
DataSet_01_179
View details
ACP1
272191_272305_275139_275201_271865_271939
0.00000
0.161
DataSet_01_179
View details
ACP1
272036_272150_272191_272305_271865_271939
0.00013
-0.314
DataSet_01_179
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ACP1
272036_272150_272191_272305_271865_271939
0.00542
-0.078
DataSet_01_179
View details
ADAM9
38940486_38940592_38947654_38947707_38940159_38940240
0.00004
0.162
DataSet_01_179
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AFMID
76200908_76200981_76201173_76201271_76198783_76198832
0.00206
0.15
DataSet_01_179
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AGFG1
228395806_228395926_228398264_228398474_228389477_228389631
0.00011
-0.532
DataSet_01_179
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AHSG
186334975_186335139_186336394_186336426_186334231_186334316
0.00000
0.123
DataSet_01_179
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Showing 1 to 10 of 187 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ALB
74279136_74279307_74279136_74279299_74280751_74280884
0.00001
-0.011
DataSet_01_179
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AOC2
41001102_41001388_41001102_41001307_41001617_41001747
0.00022
-0.787
DataSet_01_179
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ATXN2L
28844759_28844966_28844759_28844829_28845385_28845532
0.00077
0.548
DataSet_01_179
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BCS1L
219526108_219526268_219526108_219526243_219526481_219526676
0.00246
-0.575
DataSet_01_179
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BRD7
50368574_50368806_50368621_50368806_50367484_50367608
0.00668
0.5
DataSet_01_179
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CPNE1
34218662_34218883_34218822_34218883_34218360_34218412
0.00426
-0.256
DataSet_01_179
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DLST
75357758_75358002_75357758_75357870_75359536_75359650
0.00103
0.042
DataSet_01_179
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EIF3M
32615411_32615541_32615411_32615495_32616459_32616462
0.00118
0.086
DataSet_01_179
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FBXO9
52957531_52957642_52957531_52957622_52958263_52958359
0.00740
0.531
DataSet_01_179
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HMGA2
66221780_66221975_66221780_66221867_66232298_66232349
0.00117
-0.028
DataSet_01_179
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Showing 1 to 10 of 24 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACIN1
23537689_23537928_23537689_23537880_23538684_23538826
0.00018
0.216
DataSet_01_179
View details
AP1G2
24030720_24030888_24030720_24030844_24031170_24031262
0.00000
0.784
DataSet_01_179
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ASGR1
7081812_7081930_7081812_7081907_7082508_7082883
0.00017
0.027
DataSet_01_179
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C16orf13
684948_685030_684948_684956_685280_685340
0.00198
-0.391
DataSet_01_179
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DHRS2
24110874_24112428_24112360_24112428_24108967_24109104
0.00994
-0.032
DataSet_01_179
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DMTN
21926526_21927029_21926929_21927029_21925037_21925193
0.00406
-0.094
DataSet_01_179
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DVL3
183882265_183882389_183882279_183882389_183882054_183882176
0.00172
-0.049
DataSet_01_179
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EIF2B4
27589951_27590162_27589951_27590068_27590323_27590426
0.00000
0.842
DataSet_01_179
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FN1
216236975_216237047_216236975_216237023_216238044_216238134
0.00000
-0.238
DataSet_01_179
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FN1
216236631_216236800_216236631_216236738_216238044_216238134
0.00007
-0.08
DataSet_01_179
View details
Showing 1 to 10 of 39 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACADVL
7127131_7127388_7127131_7127194_7127286_7127388
0.00100
0.025
DataSet_01_179
View details
AMT
49456403_49456838_49456403_49456584_49456692_49456838
0.00890
0.194
DataSet_01_179
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AP1G2
24030720_24031624_24030720_24030844_24031170_24031624
0.00001
0.254
DataSet_01_179
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AP1G2
24034814_24035369_24034814_24034910_24035024_24035369
0.00038
0.108
DataSet_01_179
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ATP6V0B
44441973_44442331_44441973_44442051_44442261_44442331
0.00602
0.078
DataSet_01_179
View details
AUP1
74756258_74756626_74756258_74756409_74756488_74756626
0.00476
0.032
DataSet_01_179
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BAX
49458804_49459090_49458804_49458856_49458943_49459090
0.00264
0.067
DataSet_01_179
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C17orf76-AS1
16342350_16342728_16342350_16342374_16342640_16342728
0.00020
-0.019
DataSet_01_179
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C1orf63
25570040_25571792_25570040_25570124_25571640_25571792
0.00932
0.231
DataSet_01_179
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CERS2
150939867_150940190_150939867_150939960_150940139_150940190
0.00750
0.034
DataSet_01_179
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
160990875
T
C
9.42851E-06
F11R
-
FALSE
chr1
19984098
C
G
0.00826
MINOS1-NBL1,NBL1
+
FALSE
chr1
33148287
A
G
0.00052
SYNC,RBBP4
+,-
FALSE
AluSg
SINE,Alu
chr1
118167515
C
T
0.00018
FAM46C
+
FALSE
chr1
53712570
A
C
0.00277
LRP8
-
FALSE
(CA)n
SINE,Alu
chr1
160965379
T
C
0.00081
F11R
-
TRUE
AluSc
SINE,Alu
chr1
32385070
T
A
0.00593
PTP4A2
-
FALSE
chr1
16974666
C
T
0.00131
MST1P2
+
FALSE
chr1
19586455
A
G
0.00245
MRTO4
+
TRUE
AluSz
SINE,Alu
chr1
247353355
G
A
0.00628
.
FALSE
Showing 1 to 10 of 425 entries
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression