RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	27876482	C	A	0.00687	AHDC1	-	FALSE
chr1	155161704	G	C	0.00034	MUC1	-	FALSE
chr4	6710356	T	C	0.00046	MRFAP1L1	-	FALSE
chr2	37431639	T	C	0.00160	CEBPZOS,CEBPZ	+,-	FALSE	AluSc	SINE,Alu
chr2	201676441	G	A	0.00140	LOC101927795,BZW1	+,-	FALSE
chr17	25974348	C	T	0.00160	LGALS9	+	FALSE
chr15	84873635	C	T	0.00059	LOC440300,GOLGA2P7	+,-	FALSE
chr1	27992799	T	A	0.00017	IFI6	-	FALSE	FAM	SINE,Alu
chr17	30327115	C	T	0.00522	SUZ12	+	FALSE
chr1	44088117	G	T	0.00584	PTPRF	+	FALSE	(T)n	SINE,Alu
chr15	65442506	T	C	0.00088	CLPX	-	TRUE	AluSg4	SINE,Alu
chr1	65879488	A	C	0.00560	DNAJC6	+	FALSE
chr16	10624996	T	C	0.00059	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	53289860	A	G	0.00119	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr1	150048520	C	T	0.00089	VPS45	+	FALSE
chr1	9330740	G	C	0.00077	H6PD	+	FALSE
chr1	1653093	A	G	0.00674	CDK11B,CDK11A	-	FALSE	L2	SINE,Alu
chr3	160969268	C	T	0.00835	NMD3	+	FALSE
chr11	9771768	A	G	0.00891	SWAP70	+	TRUE	AluSx1	SINE,Alu
chr19	42376711	A	G	0.00223		.	FALSE	AluSp	SINE,Alu
chr15	45366812	A	G	0.00446	SORD	+	FALSE
chr2	37331555	T	C	0.00992		.	FALSE	AluJb	SINE,Alu
chr4	109734309	T	C	0.00197	COL25A1	-	FALSE
chr1	16893686	G	C	0.00296	NBPF1	-	FALSE
chr1	149885583	A	G	0.00030	SV2A	-	FALSE
chr11	65404869	G	T	1.77375E-05	PCNX3	+	FALSE
chr3	45960578	G	A	0.00632	FYCO1	-	FALSE
chr1	148558269	A	G	0.00538	NBPF15	+	FALSE	AluJb	SINE,Alu
chr3	48787094	T	C	0.00518	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr1	19542458	T	C	0.00113	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr3	99517466	G	A	0.00088	MIR548G	-	FALSE	(TG)n	SINE,Alu
chr1	20980225	G	T	0.00055	DDOST	-	FALSE
chr3	156259295	T	C	0.00039	SSR3	-	TRUE	AluSq2	SINE,Alu
chr1	120539742	G	A	0.00469	NOTCH2	-	FALSE
chr1	21940555	C	T	0.00067	RAP1GAP	-	FALSE
chr11	93474585	T	G	0.00531	TAF1D	-	FALSE
chr1	22352040	G	T	0.00255	LOC101928043,LINC00339	+,-	FALSE
chr10	79800439	A	T	0.00380	RPS24	+	FALSE
chr2	201842434	T	C	1.94652E-05	FAM126B	-	TRUE	AluJb	SINE,Alu
chr3	197612430	A	G	0.00052		.	FALSE	AluSp	SINE,Alu
chr10	24873171	G	T	0.00329	ARHGAP21	-	FALSE
chr3	10193732	A	G	0.00472	VHL	+	TRUE	AluJr	SINE,Alu
chr1	19542250	T	C	0.00015	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr6	44417835	A	G	8.27091E-07	CDC5L	+	TRUE	AluSx	SINE,Alu
chr8	143744556	T	C	0.00586	JRK	-	TRUE	AluJr	SINE,Alu
chr5	130540369	C	A	0.00126	LYRM7	+	FALSE	Tigger4a	SINE,Alu
chr1	148932848	A	G	0.00715	LOC645166	+	FALSE
chr11	8709240	A	G	0.00431	RPL27A	+	TRUE	AluYk2	SINE,Alu
chr1	10044367	A	G	5.42058E-05	NMNAT1	+	TRUE	AluSx1	SINE,Alu
chr19	10795968	C	T	0.00700	ILF3	+	FALSE
chr1	144822066	A	G	0.00020	NBPF20,NBPF9	+	FALSE
chr1	28785597	G	C	0.00595	PHACTR4	+	FALSE
chr3	105271344	A	G	0.00460	ALCAM	+	FALSE
chr4	1380585	A	G	0.00644	UVSSA	+	TRUE	AluJr	SINE,Alu
chr1	110040310	A	G	2.45230E-05	CYB561D1	+	FALSE
chr1	119574587	C	T	0.00901	WARS2	-	FALSE
chr2	120021785	T	C	0.00751	STEAP3	+	FALSE
chr1	10521103	T	C	0.00788	DFFA	-	TRUE	AluY	SINE,Alu
chr1	183218870	G	T	0.00338	NMNAT2	-	FALSE
chr7	6501820	A	T	0.00531	KDELR2	-	FALSE
chr2	206987632	T	C	0.00671		.	FALSE	AluJb	SINE,Alu
chr17	43364288	A	G	0.00345	MAP3K14	-	FALSE
chr4	39550978	T	C	3.11849E-06	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr4	165998019	T	C	0.00849	TMEM192	-	TRUE	AluSx	SINE,Alu
chr2	99813003	A	G	0.00370	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	33086876	T	C	0.00075	ZBTB8OS	-	TRUE	AluY	SINE,Alu
chr10	89005496	T	G	0.00138	NUTM2A-AS1	-	FALSE	MSTB1	SINE,Alu
chr2	70452144	T	G	0.00191	TIA1	-	FALSE
chr22	35817553	C	T	0.00038	MCM5	+	FALSE
chr1	16890656	C	T	0.00812	NBPF1	-	FALSE
chr1	93826609	T	G	0.00073	DR1	+	FALSE
chr3	156259317	T	C	0.00189	SSR3	-	TRUE	AluSq2	SINE,Alu
chr1	36067838	T	C	1.55029E-07	PSMB2	-	TRUE	AluSz	SINE,Alu
chr3	42599091	G	A	0.00196	SEC22C	-	FALSE
chr7	130629624	T	C	0.00435	LINC-PINT	-	TRUE
chr3	194361768	C	T	1.49766E-06	LSG1	-	FALSE	MSTA	SINE,Alu
chr3	48787118	T	C	0.00248	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr1	16889639	T	C	0.00350	NBPF1	-	TRUE
chr1	11347154	A	T	0.00366	UBIAD1	+	FALSE
chr1	160062340	G	A	0.00967	IGSF8	-	FALSE
chr4	1205667	A	C	0.00611	CTBP1-AS,CTBP1	+,-	FALSE	(A)n	SINE,Alu
chr1	1288481	C	A	0.00013	MXRA8	-	FALSE
chr1	19543459	T	C	0.00074	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr3	49131374	G	C	0.00905	QRICH1	-	FALSE	(CCG)n	SINE,Alu
chr12	133298275	A	G	4.13546E-09	PGAM5	+	TRUE	AluSp	SINE,Alu
chr3	101579158	A	G	0.00022	NFKBIZ	+	FALSE	AluJo	SINE,Alu
chr4	1205680	C	A	0.00247	CTBP1-AS,CTBP1	+,-	FALSE
chr4	129795659	A	T	0.00459	JADE1	+	FALSE
chr1	17393260	T	C	0.00094	PADI2	-	FALSE
chr4	165996789	T	C	0.00939		.	FALSE	AluSg4	SINE,Alu
chr1	160966351	T	C	4.07282E-11	F11R	-	TRUE	AluSg	SINE,Alu
chr1	40759231	A	G	0.00168	ZMPSTE24	+	FALSE
chr2	128063523	G	C	0.00174	MAP3K2	-	FALSE
chr2	174090635	T	A	0.00138	ZAK,MLK7-AS1	+,-	FALSE
chr2	55516090	C	T	0.00643	CCDC88A	-	FALSE
chr6	42047404	A	G	0.00182	TAF8	+	TRUE	AluSz6	SINE,Alu
chr2	170403030	T	C	0.00294	FASTKD1	-	FALSE
chr4	95586725	T	A	0.00743	PDLIM5	+	FALSE
chr1	156713558	G	A	8.10199E-06	HDGF	-	FALSE
chr1	114306374	G	A	0.00017	RSBN1	-	FALSE
chr2	217123958	T	C	0.00012	MARCH4	-	FALSE
chr1	566678	C	T	0.00559		.	FALSE
chr4	17629934	T	C	0.00178		.	FALSE	MER90	SINE,Alu
chr6	13788200	T	C	0.00879	MCUR1	-	TRUE	AluSx	SINE,Alu
chr19	18475356	A	G	0.00360	PGPEP1	+	TRUE	AluSx1	SINE,Alu
chr1	19543973	T	C	0.00236	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr18	10691357	G	A	0.00082	PIEZO2	-	FALSE
chrM	10307	A	C	0.00588		.	FALSE
chr2	75888160	A	C	0.00599	MRPL19	+	FALSE	L1MB4	SINE,Alu
chr6	42856118	A	G	0.00743	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr3	120115286	T	G	0.00077	FSTL1	-	FALSE
chr2	223807817	A	C	0.00991	ACSL3	+	FALSE	(A)n	SINE,Alu
chr1	151862656	T	C	0.00933	THEM4	-	TRUE	AluSp	SINE,Alu
chr7	75958140	C	A	0.00090	YWHAG	-	FALSE
chr1	6583270	C	G	0.00529	NOL9	-	FALSE
chr12	125511311	A	G	0.00299	THRIL	-	FALSE	AluSx1	SINE,Alu
chr6	24720533	C	G	0.00023		.	FALSE
chr5	180236449	G	C	0.00011	MGAT1	-	FALSE
chr1	205738302	G	A	0.00661	RAB29	-	FALSE
chr1	1477244	T	C	0.00365	SSU72	-	FALSE
chr5	35064460	G	C	0.00920	PRLR	-	FALSE
chr3	14986453	T	C	1.05842E-07	FGD5-AS1	-	TRUE	AluSq2	SINE,Alu
chr7	102016321	C	T	0.00201	LOC100289561,LOC100630923	+	FALSE
chr1	27108245	T	C	0.00265	ARID1A	+	FALSE
chr20	35520935	T	C	0.00120	TLDC2,SAMHD1	+,-	FALSE	FLAM_A	SINE,Alu
chr1	231557138	C	G	0.00394	EGLN1	-	FALSE
chr2	37330611	T	C	0.00249		.	FALSE	AluSq2	SINE,Alu
chr1	20945055	C	T	0.00542	CDA	+	FALSE
chr1	6283551	T	C	0.00324	ICMT	-	FALSE
chr8	37613106	T	C	0.00626	ERLIN2	+	FALSE
chr1	6282400	T	C	0.00321	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	10517653	T	C	0.00094		.	FALSE	AluSx1	SINE,Alu
chr1	22186113	T	G	0.00083	HSPG2	-	FALSE
chr7	2473761	T	C	0.00126	CHST12	+	FALSE	(CCGC)n	SINE,Alu
chr6	43582895	A	G	0.00983	POLH	+	TRUE	AluSx1	SINE,Alu
chr1	32697063	T	C	0.00035	EIF3I	+	FALSE	AluSp	SINE,Alu
chr1	25894464	G	A	0.00527	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr1	1595540	T	C	0.00042	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr1	53289759	A	G	0.00582	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr5	179041779	C	T	0.00430	HNRNPH1	-	FALSE
chr1	1654038	G	A	0.00290	CDK11B,CDK11A	-	FALSE
chr3	172115902	G	A	9.15134E-06	FNDC3B	+	FALSE
chr1	169824104	G	A	0.00744	SCYL3	-	FALSE
chr1	77759578	A	G	4.05543E-05	AK5	+	FALSE
chr5	81571876	A	T	0.00092	RPS23	-	FALSE
chr8	11701490	T	C	2.07071E-11	CTSB	-	TRUE	AluSx1	SINE,Alu
chr1	46075715	A	G	0.00058	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	19543456	T	C	0.00011	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr3	78646942	T	G	0.00093	ROBO1	-	FALSE
chr12	120898728	A	G	0.00947	GATC	+	TRUE	AluY	SINE,Alu
chr7	129472355	G	C	0.00246	UBE2H	-	FALSE
chr1	145283733	A	G	0.00458	NBPF20,NOTCH2NL	+	FALSE
chr4	73922981	T	C	0.00491	COX18	-	TRUE	AluSz	SINE,Alu
chr5	41917695	C	T	0.00019	C5orf51	+	FALSE
chr1	230416038	G	A	0.00626	GALNT2	+	FALSE
chr2	101622883	T	A	0.00440	RPL31	+	FALSE
chr1	45975584	T	C	0.00327	MMACHC	+	FALSE	AluSx4	SINE,Alu
chr1	218617543	G	A	0.00291	TGFB2	+	FALSE
chr16	75479891	T	C	9.48885E-06	TMEM170A	-	TRUE	AluSg4	SINE,Alu
chr1	179045500	C	A	0.00043	FAM20B	+	FALSE
chr2	204301752	G	C	0.00029	RAPH1	-	FALSE
chr20	43707842	A	G	0.00100	STK4	+	TRUE	AluJb	SINE,Alu
chr6	36894341	G	A	0.00575	C6orf89	+	FALSE	GA-rich	SINE,Alu
chr1	9163290	T	C	0.00016		.	FALSE	AluSp	SINE,Alu
chr1	1252662	T	C	0.00235	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr1	47903063	G	C	0.00292	FOXD2	+	FALSE
chr6	42856056	A	G	0.00602	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	173863209	G	A	0.00156		.	FALSE
chr1	36522460	A	G	0.00407		.	FALSE	AluSc	SINE,Alu
chr3	52448770	A	G	0.00498	PHF7	+	TRUE	AluJb	SINE,Alu
chr5	179720333	A	G	0.00308		.	FALSE
chr4	38937372	T	C	0.00388	FAM114A1	+	FALSE
chr16	9204015	C	T	0.00325	C16orf72	+	FALSE
chr1	179042270	T	C	0.00044	FAM20B	+	FALSE
chr1	148343689	A	G	0.00517	NBPF8,NBPF14,NBPF9	-	FALSE
chr5	130540368	A	C	0.00420	LYRM7	+	FALSE	Tigger4a	SINE,Alu
chr3	33458266	T	C	0.00035	UBP1	-	FALSE
chr1	145273345	T	C	0.00133	NBPF20,NOTCH2NL	+	FALSE
chr3	66419942	A	G	0.00284	SLC25A26	+	FALSE
chr17	41144609	G	A	0.00821	RUNDC1	+	FALSE
chr6	32148031	A	G	1.10299E-06		.	FALSE
chr1	19934793	G	A	0.00068	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr2	198368113	T	A	1.78788E-05	HSPE1,HSPE1-MOB4	+	FALSE
chr1	86049391	T	A	0.00019	CYR61	+	FALSE
chr1	113212984	C	T	7.79033E-05	CAPZA1	+	FALSE	(T)n	SINE,Alu
chr2	198572082	T	C	0.00093	MARS2	+	FALSE
chr5	149364145	A	G	0.00383	SLC26A2	+	TRUE	AluSc8	SINE,Alu
chr1	180082720	G	A	0.00577	CEP350	+	FALSE
chr3	196080624	T	C	0.00795	UBXN7	-	TRUE	AluSx	SINE,Alu
chr5	74072638	G	A	0.00431	NSA2	+	FALSE
chr11	32125961	C	T	0.00118	RCN1	+	FALSE
chr1	33149333	A	G	0.00980	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	94352570	G	T	0.00097	GCLM	-	FALSE	AluSx1	SINE,Alu
chr2	38298419	A	G	0.00575	CYP1B1	-	FALSE
chr1	51738627	A	G	0.00024	RNF11	+	FALSE
chr6	42857179	C	A	0.00492	RPL7L1	+	FALSE	AluSp	SINE,Alu
chr1	6311399	A	G	0.00126	GPR153	-	FALSE
chr1	10366487	T	G	0.00187	KIF1B	+	FALSE
chr1	53289860	A	G	0.00041	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr1	32697071	C	A	0.00134	EIF3I	+	FALSE	AluSp	SINE,Alu
chr19	198079	T	C	0.00933	LINC01002	-	FALSE
chr1	9989022	A	G	0.00616	LZIC	-	FALSE	L1MB5	SINE,Alu
chr1	10042937	A	G	2.41028E-05	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr2	10050947	T	C	0.00273	TAF1B	+	FALSE
chr1	28150601	A	T	0.00382	STX12	+	FALSE
chr7	44841799	A	G	0.00693	PPIA	+	TRUE	AluSx	SINE,Alu
chr19	36575645	G	A	0.00590	WDR62	+	FALSE
chr1	10367424	G	A	0.00286	KIF1B	+	FALSE	AluSx	SINE,Alu
chr7	6442891	G	A	0.00134	RAC1	+	FALSE
chr16	10623531	T	C	1.32618E-09	EMP2	-	TRUE	AluSp	SINE,Alu
chr1	10520725	T	C	0.00234	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	27202959	T	C	0.00653		.	FALSE	AluSq2	SINE,Alu
chrX	37699364	C	G	0.00695	DYNLT3	-	FALSE
chr1	10521170	T	C	0.00538	DFFA	-	TRUE	AluY	SINE,Alu
chr2	113334241	A	G	0.00388	POLR1B	+	TRUE
chr1	154179193	A	T	0.00122	C1orf43	-	FALSE
chr7	107788257	C	T	0.00068	NRCAM	-	FALSE
chr2	176792357	A	G	7.02808E-05	LNPK	-	FALSE
chr1	202993056	T	C	0.00046	TMEM183A	+	FALSE
chr1	326539	A	G	0.00450		.	FALSE
chr5	115166350	T	C	0.00148	ATG12	-	TRUE	AluJr	SINE,Alu
chr1	109746728	A	G	0.00171	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr6	74304013	T	C	3.72993E-06	SLC17A5	-	TRUE	AluSx3	SINE,Alu
chr5	125961534	A	G	0.00233	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	6694980	G	A	0.00240	THAP3,DNAJC11	+,-	FALSE
chr2	206983797	T	C	0.00145		.	FALSE	AluSx	SINE,Alu
chr10	13320126	T	A	0.00830	PHYH	-	FALSE
chr1	179044216	A	G	0.00277	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	53291408	A	G	0.00931	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	16891340	T	A	0.00022	NBPF1	-	FALSE
chr19	53914418	A	G	0.00891	ZNF765	+	TRUE	AluSx	SINE,Alu
chr1	179042905	A	G	0.00034	FAM20B	+	TRUE
chr1	9643106	A	G	0.00088		.	FALSE	AluSx	SINE,Alu
chr1	21940555	C	T	0.00907	RAP1GAP	-	FALSE
chr1	74672640	T	A	0.00011	FPGT-TNNI3K,FPGT	+	FALSE
chr1	200941185	T	G	0.00729	KIF21B	-	FALSE
chr14	23794554	G	A	0.00966	BCL2L2-PABPN1,PABPN1	+	FALSE	A-rich	SINE,Alu
chr1	104097685	C	T	0.00721	RNPC3,AMY2B	+	FALSE
chr1	109746825	A	G	0.00281	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr1	53288924	A	G	0.00099	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr2	37327280	A	T	0.00831		.	FALSE	L1MB8	SINE,Alu
chr12	133298125	A	G	0.00025	PGAM5	+	TRUE	AluJo	SINE,Alu
chr1	109737090	G	A	0.00173	KIAA1324	+	FALSE
chr1	32688036	A	T	0.00265	EIF3I	+	FALSE
chr5	174956218	A	G	0.00953	SFXN1	+	TRUE	AluSp	SINE,Alu
chr11	94903795	G	T	0.00328	SESN3	-	FALSE
chr1	59124223	G	A	0.00327	MYSM1	-	FALSE	MIR3	SINE,Alu
chr1	59249682	G	A	0.00074	JUN	-	FALSE
chr1	204521512	A	G	7.69882E-05	MDM4	+	TRUE	AluSg	SINE,Alu
chr1	46500251	G	A	0.00205	MAST2	+	FALSE
chr2	38971040	G	T	0.00651	SRSF7	-	FALSE
chr17	42880190	T	C	0.00284	GJC1	-	TRUE	AluJb	SINE,Alu
chr2	97020049	T	C	0.00070	NCAPH	+	FALSE
chr1	114940216	T	G	0.00207	TRIM33	-	FALSE	(T)n	SINE,Alu
chr14	50792837	A	G	0.00550	ATP5S	+	TRUE	AluSx	SINE,Alu
chr1	145209366	A	G	0.00499	NBPF20,NOTCH2NL	+	FALSE
chr7	156762446	G	T	0.00162	NOM1	+	FALSE
chr1	158067061	G	T	0.00093	KIRREL	+	FALSE
chr1	148004422	T	A	0.00733	NBPF8	-	FALSE
chr16	89630630	C	T	0.00296	RPL13	+	FALSE
chr1	100550370	T	A	0.00731	SASS6	-	FALSE
chr3	119212010	A	G	0.00685	POGLUT1	+	FALSE

RBP	CPSF7
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR594DNW
Platform	HiSeq
Pubmed ID	32252787

CPSF7 - Target Gene Network