RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	2121118	C	T	0.00234	FAAP20	-	FALSE
chr1	95362953	T	C	0.00072	CNN3	-	FALSE
chr13	52952575	G	A	0.00030	THSD1	-	FALSE
chr1	45975358	A	G	0.00339	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr1	16534255	C	G	0.00980	ARHGEF19	-	FALSE
chr5	149363273	A	G	0.00114	SLC26A2	+	TRUE	AluJr	SINE,Alu
chr16	48386442	A	G	0.00964	LONP2,MIR5095	+	TRUE	AluSz6	SINE,Alu
chr1	142619487	A	G	0.00511		.	FALSE
chr1	145513031	A	G	0.00705	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	100361925	G	A	0.00181	AGL	+	FALSE
chr1	10517527	T	C	0.00453		.	FALSE	AluSx1	SINE,Alu
chrX	102613351	A	G	0.00969	TCEAL9	+	FALSE	L1ME4a	SINE,Alu
chr1	6583066	T	C	0.00088	NOL9	-	TRUE	AluSx4	SINE,Alu
chr1	16889423	G	C	6.70783E-10	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr1	113213009	A	T	0.00556	CAPZA1	+	FALSE
chr5	37290400	T	C	0.00085		.	FALSE	AluSz	SINE,Alu
chr1	180169330	C	T	0.00374	FLJ23867	+	FALSE	MIR	SINE,Alu
chr1	1345006	A	G	1.26297E-06		.	FALSE	AluSg	SINE,Alu
chr1	23847464	C	A	0.00895	E2F2	-	FALSE
chr1	226333558	A	C	0.00722	ACBD3	-	FALSE	(CAAAA)n	SINE,Alu
chr1	146629399	G	T	0.00611	PRKAB2	-	FALSE
chr1	16200163	A	G	0.00112	SPEN	+	FALSE
chr14	75202312	A	G	3.27721E-05	FCF1	+	TRUE	AluSc	SINE,Alu
chr7	128144035	A	G	0.00054		.	FALSE	AluSq2	SINE,Alu
chr2	217366191	T	A	0.00306		.	FALSE
chr3	81698130	T	C	2.93981E-08	GBE1	-	FALSE
chr1	43272842	A	T	5.93810E-05	SVBP	-	FALSE
chr5	174956493	T	A	0.00466	SFXN1	+	FALSE
chr3	10192720	A	G	0.00110	VHL	+	TRUE	AluSx1	SINE,Alu
chr2	216903620	T	C	0.00623	PECR	-	TRUE	AluSx3	SINE,Alu
chr4	52753346	A	G	0.00782	DCUN1D4	+	TRUE	AluSc	SINE,Alu
chr10	98278593	A	T	0.00792	TM9SF3	-	FALSE
chr21	46935076	T	G	0.00164	SLC19A1	-	FALSE
chr1	214813487	A	G	0.00027	CENPF	+	FALSE
chr1	120162635	A	T	0.00203	ZNF697	-	FALSE
chr7	100064719	A	G	0.00276	TSC22D4	-	FALSE
chr5	176026131	A	T	0.00979	GPRIN1	-	FALSE
chr1	184661933	G	A	0.00138	EDEM3	-	FALSE
chr2	24225006	A	G	0.00141		.	FALSE	AluSx	SINE,Alu
chr1	153720690	G	A	0.00786	INTS3	+	FALSE
chr19	18475356	A	G	0.00360	PGPEP1	+	TRUE	AluSx1	SINE,Alu
chr1	16952920	G	A	0.00475	CROCCP2	-	FALSE
chr4	3242223	G	A	0.00073	HTT	+	FALSE
chr1	45504720	G	C	0.00759	ZSWIM5	-	FALSE
chr1	151778899	T	C	0.00475	RORC	-	FALSE
chr7	29962665	C	T	0.00059	SCRN1	-	FALSE
chr1	19542455	T	C	0.00506	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr9	137330714	A	C	0.00030	RXRA	+	FALSE
chr1	16912138	A	G	0.00197	NBPF1	-	FALSE
chr1	36770602	T	G	0.00441	THRAP3	+	FALSE	(T)n	SINE,Alu
chr3	191116133	C	T	0.00032	CCDC50	+	FALSE
chr1	6283558	A	T	0.00624	ICMT	-	FALSE
chr7	96318078	A	T	0.00790		.	FALSE
chr13	50273970	C	T	1.77946E-05	KPNA3	-	FALSE
chr1	92976590	G	A	0.00629	EVI5	-	FALSE
chr1	1419700	A	G	0.00671	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr1	9644558	A	G	0.00451		.	FALSE	AluSx	SINE,Alu
chr2	178406765	T	A	0.00325	AGPS	+	FALSE
chr1	36282608	G	T	0.00886	AGO4	+	FALSE
chr1	28825331	A	G	0.00024	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr1	180897569	C	T	0.00960	KIAA1614	+	FALSE
chr2	118854088	C	T	0.00543	INSIG2	+	FALSE
chr1	10520692	T	C	0.00973	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	118066459	A	G	0.00729	MAN1A2	+	FALSE
chr1	205577901	G	A	0.00904	ELK4	-	FALSE
chr1	28661692	A	G	2.56757E-06	MED18	+	TRUE	AluSg	SINE,Alu
chr3	141668758	T	C	2.84489E-05	TFDP2	-	TRUE	AluSz	SINE,Alu
chr1	19542455	T	C	0.00263	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	55207988	G	A	0.00914	MROH7-TTC4,TTC4	+	FALSE
chr4	13604418	G	C	2.95746E-07	BOD1L1	-	FALSE
chr4	95586224	A	G	0.00053	PDLIM5	+	FALSE
chr1	570178	G	A	0.00787		.	FALSE
chr15	74319092	A	G	0.00029	PML	+	TRUE	AluSz6	SINE,Alu
chr1	16892276	T	C	0.00209	NBPF1	-	FALSE
chr16	10623558	T	C	0.00103	EMP2	-	TRUE	AluSp	SINE,Alu
chr1	6582527	T	C	0.00139	NOL9	-	TRUE	AluSx1	SINE,Alu
chr1	26901090	C	T	0.00952	RPS6KA1	+	FALSE
chr10	13320123	C	A	0.00830	PHYH	-	FALSE
chr1	204521616	A	G	0.00455	MDM4	+	TRUE	AluSg	SINE,Alu
chr1	27107650	T	A	3.71504E-05	ARID1A	+	FALSE
chr6	158093827	C	T	0.00201	ZDHHC14	+	FALSE
chr1	25775374	C	T	0.00710	TMEM57	+	FALSE
chr1	234542410	C	A	0.00832	TARBP1	-	FALSE
chr2	224622277	T	C	0.00138	AP1S3	-	TRUE	AluSx1	SINE,Alu
chr11	65404877	G	A	0.00106	PCNX3	+	FALSE
chr15	23313171	A	G	0.00257	HERC2P2	-	FALSE
chr1	6283260	T	C	0.00125	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	44447004	G	A	0.00767	B4GALT2	+	FALSE	(CAG)n	SINE,Alu
chr1	45975673	A	G	0.00410	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr1	46075720	A	G	0.00105	NASP	+	TRUE	AluSx4	SINE,Alu
chr10	124913908	C	A	0.00784	BUB3	+	FALSE
chr1	109419841	C	T	0.00057	GPSM2	+	FALSE
chr1	156495521	C	A	0.00097	IQGAP3	-	FALSE
chr1	145369476	A	G	0.00332	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr1	169768080	C	A	0.00980	C1orf112	+	FALSE
chr3	156258389	T	C	0.00179	SSR3	-	TRUE	AluYk3	SINE,Alu
chr6	42856156	A	G	0.00190	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr2	219100706	A	G	0.00874	ARPC2	+	TRUE	AluSx1	SINE,Alu
chr17	56049829	T	C	5.66836E-08	VEZF1	-	TRUE
chr7	44841931	A	G	0.00054	PPIA	+	TRUE	AluSx	SINE,Alu
chr1	32799510	T	G	0.00048	MARCKSL1	-	FALSE
chr7	2650926	G	A	0.00306	IQCE	+	FALSE
chr9	131093336	T	C	0.00397	COQ4	+	FALSE	AluY	SINE,Alu
chr1	47844500	T	G	0.00169	CMPK1	+	FALSE
chr1	206557430	C	T	0.00011	SRGAP2	+	FALSE
chr1	118167524	C	T	0.00902	FAM46C	+	FALSE
chr1	193222534	G	T	0.00504	CDC73	+	FALSE	(TGT)n	SINE,Alu
chr14	53109810	T	C	0.00463	ERO1A	-	TRUE	MER53	SINE,Alu
chr7	44841237	T	A	0.00599	PPIA	+	FALSE
chr2	55516891	G	A	2.12747E-05	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr2	38971639	A	T	0.00019	SRSF7	-	FALSE
chr7	138732191	T	C	0.00746	ZC3HAV1	-	TRUE	MER5B	SINE,Alu
chr3	72425248	T	A	0.00281	RYBP	-	FALSE
chr8	95805071	A	G	1.12730E-06	DPY19L4	+	TRUE	AluYf1	SINE,Alu
chr19	17412218	C	T	0.00790	ABHD8	-	FALSE
chr3	40503772	T	A	0.00153	RPL14	+	FALSE
chr8	94744813	C	T	5.22032E-05	RBM12B	-	FALSE
chr1	145281408	C	T	9.69497E-05	NBPF20,NOTCH2NL	+	FALSE
chr10	129910475	T	G	0.00061	MKI67	-	FALSE
chr1	146495574	C	T	0.00085	LOC728989	-	FALSE
chr3	196046746	T	C	0.00513	TM4SF19-TCTEX1D2,TM4SF19-AS1	+,-	FALSE	AluSc5	SINE,Alu
chr4	2940347	T	C	0.00113	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	101443701	A	G	0.00406	SLC30A7	+	FALSE
chr2	32534897	A	G	0.00111		.	FALSE	AluSx1	SINE,Alu
chr3	195404649	A	G	0.00624	SDHAP2	+	FALSE
chr1	10518720	T	C	0.00530		.	FALSE	AluSx1	SINE,Alu
chr1	26449336	A	G	0.00343	PDIK1L	+	FALSE
chr1	6259025	C	T	0.00700	RPL22	-	FALSE
chr15	90819579	A	G	0.00933		.	FALSE	AluSx	SINE,Alu
chr1	27678721	A	G	0.00030	SYTL1	+	TRUE	AluSx1	SINE,Alu
chr3	179116220	T	C	0.00233	GNB4	-	TRUE	AluSz6	SINE,Alu
chr2	143638991	A	C	0.00054	KYNU	+	FALSE
chr4	88293887	G	A	0.00548	HSD17B11	-	FALSE
chr17	78091513	G	A	0.00810	GAA	+	FALSE
chr10	101992793	T	C	0.00407	CWF19L1	-	TRUE	AluJb	SINE,Alu
chr8	30536016	T	C	2.97001E-06	GSR	-	TRUE	AluJr	SINE,Alu
chr6	33385535	A	G	0.00671		.	FALSE
chr1	1595500	T	C	0.00482	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr2	208619742	A	G	0.00500	CCNYL1	+	TRUE	AluJb	SINE,Alu
chr3	136667405	T	C	0.00190	NCK1	+	FALSE
chr1	900720	A	T	0.00065	KLHL17	+	FALSE	(TTTA)n	SINE,Alu
chr5	9546451	G	A	0.00030	SNHG18	+	FALSE
chr15	93198678	T	C	0.00064	FAM174B	-	FALSE	(GCCGCT)n	SINE,Alu
chr1	110040310	A	G	2.45230E-05	CYB561D1	+	FALSE
chr3	149683506	G	C	0.00147	PFN2	-	FALSE
chr1	19543459	T	C	0.00395	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	62627128	A	G	2.94675E-05	PATJ	+	TRUE	AluSx	SINE,Alu
chr2	204162601	A	G	0.00032	CYP20A1	+	TRUE	AluSx	SINE,Alu
chr1	92975244	T	A	0.00220	EVI5	-	FALSE
chr2	39010088	A	G	0.00192		.	FALSE	AluSp	SINE,Alu
chr2	197004439	A	G	0.00034	STK17B	-	FALSE
chr6	31601344	T	C	0.00569		.	FALSE
chr19	11256703	T	C	2.95254E-05	SPC24	-	TRUE	AluJr4	SINE,Alu
chr1	40537918	T	A	0.00773	CAP1	+	FALSE
chr3	48787633	T	C	0.00314	PRKAR2A	-	TRUE	AluSp	SINE,Alu
chr8	98736864	T	A	0.00086	MTDH	+	FALSE
chr2	201774341	T	C	0.00073		.	FALSE	AluSz	SINE,Alu
chr2	99772813	A	G	1.48642E-06	LIPT1	+	TRUE	AluSx1	SINE,Alu
chr1	56961756	A	G	0.00682	PLPP3	-	FALSE
chr1	95658342	A	T	0.00123	TMEM56-RWDD3,LOC101928118,TMEM56	+,-	FALSE
chr1	142449	G	A	0.00073		.	FALSE	MIRb	SINE,Alu
chr19	4423353	G	A	0.00057	CHAF1A	+	FALSE	GA-rich	SINE,Alu
chr2	223807622	G	T	0.00875	ACSL3	+	FALSE
chr12	133298121	A	G	1.85542E-11	PGAM5	+	TRUE	AluJo	SINE,Alu
chr1	67875026	A	T	0.00557	SERBP1	-	FALSE
chr1	234561498	T	C	0.00092	TARBP1	-	FALSE
chr1	20977748	T	G	0.00474	PINK1,PINK1-AS	+,-	FALSE
chr2	55516911	A	G	0.00719	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr1	38182333	G	T	0.00063	EPHA10	-	FALSE	L2d2	SINE,Alu
chr1	52306087	C	T	0.00022	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr1	53680205	C	T	9.80404E-07	C1orf123	-	FALSE
chr19	11256626	T	C	1.61091E-07	SPC24	-	TRUE	AluJr4	SINE,Alu
chr5	126113463	A	C	0.00392	LMNB1	+	FALSE	(CGACGCG)n	SINE,Alu
chr16	10624993	T	C	1.49189E-05	EMP2	-	TRUE	AluSx3	SINE,Alu
chr6	31322980	C	T	0.00091		.	FALSE
chr1	54637167	T	C	0.00027		.	FALSE
chr1	230416412	C	G	0.00514	GALNT2	+	FALSE
chr1	149581854	C	A	0.00175	LINC00623,LINC00869,LOC103091866	+	FALSE	L2b	SINE,Alu
chr12	1602602	A	G	8.31525E-05	ERC1	+	FALSE	AluSx	SINE,Alu
chr7	65844562	T	C	0.00695	LINC00174	-	FALSE
chr1	230415244	T	C	0.00780	GALNT2	+	FALSE
chr4	7762356	G	A	3.36293E-10	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	222713503	C	G	0.00860	HHIPL2	-	FALSE
chr1	63881552	C	T	0.00293	ALG6	+	FALSE
chr1	116235277	C	T	0.00396	VANGL1	+	FALSE
chr1	40722795	G	A	9.35494E-07		.	FALSE	Charlie2a	SINE,Alu
chr12	124105948	C	T	0.00778	EIF2B1	-	FALSE
chr1	155403823	A	G	0.00850	ASH1L,POU5F1P4	+,-	FALSE
chr6	42061234	T	C	0.00170		.	FALSE	AluSx1	SINE,Alu
chr1	160302244	T	C	0.00310	COPA	-	TRUE
chr1	144828795	C	G	0.00887	NBPF20,NBPF9	+	FALSE
chr1	16717888	G	A	0.00118	SZRD1	+	FALSE
chr1	207221096	G	A	0.00452	YOD1	-	FALSE
chr1	51822219	G	A	0.00283	EPS15	-	FALSE
chr1	53289892	A	G	0.00079	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr1	6283434	T	C	0.00285	ICMT	-	TRUE	AluSx3	SINE,Alu
chr10	60047612	A	G	0.00015	CISD1	+	FALSE	(A)n	SINE,Alu
chr1	121133998	T	A	0.00171	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	L1MB4	SINE,Alu
chr1	145368461	A	C	0.00542	NBPF20,NBPF10	+	FALSE
chr1	110604747	G	A	0.00101	ALX3	-	FALSE
chr6	42849746	A	G	0.00042	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	46077218	A	G	0.00543	NASP	+	TRUE	AluSc8	SINE,Alu
chr1	146215189	G	C	0.00226	NBPF20,NBPF10,NBPF25P	+	FALSE
chr2	37431563	A	G	0.00993	CEBPZOS,CEBPZ	+,-	FALSE	AluSc	SINE,Alu
chr5	132232315	G	A	0.00573	AFF4	-	FALSE
chr9	127711532	T	C	0.00018	SCAI	-	TRUE	AluSp	SINE,Alu
chr1	197125427	T	C	0.00331	ZBTB41	-	FALSE
chr2	28002603	C	A	0.00010	MRPL33	+	FALSE
chr12	69237077	A	G	0.00445	MDM2	+	TRUE	(GA)n	SINE,Alu
chr1	28608338	A	G	0.00341	SESN2	+	FALSE
chr1	168220489	A	G	0.00319		.	FALSE	AluSz6	SINE,Alu
chr4	128756632	A	G	0.00602		.	FALSE	AluSx	SINE,Alu
chr1	10517276	T	C	0.00079		.	FALSE	AluJr	SINE,Alu
chr1	16933135	G	T	2.86961E-06	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	15993603	G	A	0.00103		.	FALSE	AluSx4	SINE,Alu
chr10	101992298	T	C	0.00409	CWF19L1	-	TRUE	AluSq2	SINE,Alu
chr1	110207639	T	A	0.00080	GSTM4	+	FALSE
chr4	22404391	G	A	0.00338	ADGRA3	-	FALSE
chr5	149823799	A	T	0.00672	RPS14	-	FALSE
chr1	9163328	T	C	0.00150		.	FALSE	AluSp	SINE,Alu
chr10	98281480	T	A	0.00620	TM9SF3	-	FALSE
chr10	15120306	T	C	0.00323	ACBD7	-	TRUE	L1PA7	SINE,Alu
chr1	19198576	A	G	0.00542	ALDH4A1	-	FALSE
chr7	2394991	C	T	9.93448E-08	EIF3B	+	FALSE
chr3	53260620	T	G	0.00069	TKT	-	FALSE
chr8	37351214	T	C	0.00109	LINC01605	-	FALSE
chr11	68523055	T	C	0.00524	CPT1A	-	TRUE	AluY	SINE,Alu
chr1	16112795	A	G	1.78234E-05	FBLIM1	+	FALSE
chr17	79674375	C	T	0.00129	MRPL12	+	FALSE
chr7	65619243	A	G	9.04168E-05	CRCP	+	TRUE	AluSz6	SINE,Alu
chr1	6282587	T	C	0.00221	ICMT	-	TRUE
chr7	29961659	C	G	7.23387E-07	SCRN1	-	FALSE
chr5	81571877	C	T	0.00033	RPS23	-	FALSE
chr1	949472	G	A	9.07885E-12	ISG15	+	FALSE
chr7	75045694	C	T	1.64957E-05	NSUN5P1	+	FALSE
chr1	19543457	T	C	0.00101	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	27181647	G	A	0.00103	ZDHHC18	+	FALSE
chr9	19063167	C	T	0.00539	HAUS6	-	FALSE

RBP	TIA1
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR057GCF
Platform	HiSeq
Pubmed ID	32252787

TIA1 - Target Gene Network