Dataset Overview
RBP
TIA1
Knock-Method
shRNA
RBP Family
RRM_1
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR057GCF
Platform
HiSeq
Pubmed ID
32252787
TIA1 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of TIA1
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1BG
40.38
27.8
-0.66648
1.65962E-10
2.23928E-09
AADAC
0.87
0.38
-1.12080
0.00334
0.00964
AAGAB
4.83
6.56
0.40154
0.00201
0.00619
AAK1
1.2
1.97
0.96463
4.07145E-08
3.62963E-07
AAMP
124.44
105.11
-0.41529
3.26249E-07
2.40063E-06
AAR2
22.2
19.68
-0.28802
0.00126
0.00413
AARS
51.81
84.75
0.59231
4.38292E-13
8.73892E-12
AASDHPPT
16.4
13.94
-0.54667
1.19504E-08
1.19781E-07
AASS
6.69
10.44
0.59597
4.87975E-08
4.27968E-07
ABAT
17.85
15.43
-0.36092
2.60292E-05
0.00013
Showing 1 to 10 of 6,751 entries
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Function Analysis of Target Genes of TIA1
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A1CF
52642377_52642465_52619601_52619745_52645340_52645435
0.00983
0.04
DataSet_01_181
View details
ABCC10
43406008_43406128_43405671_43405751_43406361_43406533
0.00265
0.256
DataSet_01_181
View details
ABCC2
101576820_101576968_101572774_101572901_101577064_101577156
0.00059
0.217
DataSet_01_181
View details
ABCC2
101579184_101579299_101578845_101579026_101590063_101590190
0.00121
0.055
DataSet_01_181
View details
ABCC2
101579193_101579299_101578845_101579026_101590063_101590190
0.00312
0.045
DataSet_01_181
View details
ABCC6
16288270_16288372_16286686_16286779_16291877_16292039
0.00031
0.132
DataSet_01_181
View details
AC027612.6
91842945_91843023_91805185_91806180_91843393_91843404
0.00469
0.105
DataSet_01_181
View details
ACADSB
124797262_124797363_124793870_124794031_124799981_124800173
0.00465
-0.047
DataSet_01_181
View details
ACAT2
160189542_160189660_160183950_160184085_160196201_160196339
0.00005
-0.033
DataSet_01_181
View details
ACIN1
23559190_23559310_23550956_23551045_23559730_23559842
0.00000
0.254
DataSet_01_181
View details
Showing 1 to 10 of 501 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A2M
9251202_9251352_9252061_9252119_9248134_9248296
0.00000
0.183
DataSet_01_181
View details
A2M
9251202_9251352_9252061_9252080_9248134_9248296
0.00271
0.506
DataSet_01_181
View details
ABAT
8829555_8829666_8839857_8839955_8768421_8768568
0.00007
-0.19
DataSet_01_181
View details
ACIN1
23550956_23551045_23559190_23559310_23548755_23550018
0.00000
0.689
DataSet_01_181
View details
ACSL4
108926364_108926601_108939372_108939425_108925947_108926125
0.00000
-0.088
DataSet_01_181
View details
ADCK2
140380841_140380937_140386789_140387041_140378954_140379083
0.00051
0.24
DataSet_01_181
View details
ADD1
2877622_2877837_2883624_2883787_2845583_2845751
0.00001
-0.307
DataSet_01_181
View details
AHSG
186334975_186335139_186336394_186336426_186334231_186334316
0.00000
0.021
DataSet_01_181
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AHSG
186336285_186336426_186337645_186337729_186334975_186335139
0.00012
-0.009
DataSet_01_181
View details
AHSG
186336079_186336280_186337645_186337729_186334975_186335139
0.00177
0.007
DataSet_01_181
View details
Showing 1 to 10 of 226 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ANKZF1
220094949_220095127_220094949_220095072_220096649_220096762
0.00312
-0.171
DataSet_01_181
View details
AP1G2
24036805_24036992_24036947_24036992_24036319_24036528
0.00145
0.101
DataSet_01_181
View details
APEX1
20923736_20923932_20923736_20923862_20924072_20924260
0.00094
0.035
DataSet_01_181
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APOE
45409052_45409301_45409052_45409098_45409858_45410583
0.00653
0.509
DataSet_01_181
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ATP5G1
46970770_46970954_46970770_46970818_46971733_46971811
0.00325
0.017
DataSet_01_181
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ATP6V0B
44441471_44441646_44441471_44441520_44441761_44441845
0.00066
0.205
DataSet_01_181
View details
B4GALT2
44451188_44451420_44451188_44451293_44455969_44456151
0.00182
-0.032
DataSet_01_181
View details
BTN2A2
26383353_26383527_26383353_26383409_26384019_26384143
0.00794
-0.181
DataSet_01_181
View details
C17orf76-AS1
16342640_16343017_16342640_16342728_16343498_16343567
0.00000
0.106
DataSet_01_181
View details
C9orf156
100675682_100675840_100675689_100675840_100672270_100672898
0.00252
-0.485
DataSet_01_181
View details
Showing 1 to 10 of 76 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACADVL
7127798_7127871_7127802_7127871_7127639_7127712
0.00076
-0.102
DataSet_01_181
View details
ACTG1
79478928_79479168_79478928_79479141_79479257_79479386
0.00045
-0.503
DataSet_01_181
View details
ACTG1
79478213_79478829_79478213_79478652_79478928_79479168
0.00322
0.503
DataSet_01_181
View details
APOA2
161193056_161193247_161193056_161193215_161193384_161193418
0.00022
0.053
DataSet_01_181
View details
APOC4
45451957_45452117_45452019_45452117_45451722_45451790
0.00006
-0.029
DataSet_01_181
View details
AUP1
74754067_74754272_74754067_74754186_74754374_74754446
0.00000
0.115
DataSet_01_181
View details
AUP1
74754067_74754279_74754067_74754186_74754374_74754446
0.00324
0.035
DataSet_01_181
View details
AUP1
74754374_74754520_74754374_74754490_74754597_74754717
0.00385
0.022
DataSet_01_181
View details
AUP1
74754067_74754248_74754067_74754186_74754374_74754446
0.00739
0.041
DataSet_01_181
View details
C17orf76-AS1
16342894_16343567_16343498_16343567_16342640_16342728
0.00123
0.06
DataSet_01_181
View details
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCC10
43405671_43406533_43405671_43405751_43406361_43406533
0.00670
0.217
DataSet_01_181
View details
ACAA1
38167652_38168191_38167652_38167832_38168000_38168191
0.00316
0.098
DataSet_01_181
View details
ACAA1
38167316_38168191_38167316_38167372_38167652_38168191
0.00442
0.036
DataSet_01_181
View details
ACTB
5567911_5569031_5567911_5568350_5568791_5569031
0.00920
0.007
DataSet_01_181
View details
ACTG1
79477952_79478652_79477952_79478134_79478213_79478652
0.00000
0.034
DataSet_01_181
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AHSA2
61412636_61413632_61412636_61412753_61413580_61413632
0.00199
0.119
DataSet_01_181
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AKT1
105237081_105238789_105237081_105237184_105238701_105238789
0.00014
-0.036
DataSet_01_181
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ANAPC5
121764898_121766300_121764898_121765034_121766118_121766300
0.00008
0.109
DataSet_01_181
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ANAPC5
121756079_121756411_121756079_121756227_121756303_121756411
0.00188
0.057
DataSet_01_181
View details
ANO7
242162600_242163370_242162600_242163196_242163319_242163370
0.00181
-0.341
DataSet_01_181
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
2121118
C
T
0.00234
FAAP20
-
FALSE
chr1
95362953
T
C
0.00072
CNN3
-
FALSE
chr1
45975358
A
G
0.00339
MMACHC
+
TRUE
AluSg7
SINE,Alu
chr1
16534255
C
G
0.00980
ARHGEF19
-
FALSE
chr1
142619487
A
G
0.00511
.
FALSE
chr1
145513031
A
G
0.00705
NBPF20,NBPF10,RBM8A,GNRHR2
+,-
FALSE
AluSz6
SINE,Alu
chr1
100361925
G
A
0.00181
AGL
+
FALSE
chr1
10517527
T
C
0.00453
.
FALSE
AluSx1
SINE,Alu
chr1
6583066
T
C
0.00088
NOL9
-
TRUE
AluSx4
SINE,Alu
chr1
16889423
G
C
6.70783E-10
NBPF1
-
FALSE
L1MC4
SINE,Alu
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression