Dataset Overview
RBPHNRNPC
Knock-MethodshRNA
RBP FamilyRRM_1
Biosample NameK562
Tissue TypeHaematopoietic_and_lymphoid_tissue
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR470PRV
PlatformHiSeq
Pubmed ID32252787

HNRNPC - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of HNRNPC
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of HNRNPC


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr1145689568AG8.25649E-05NBPF20,NBPF10+TRUEAluSgSINE,Alu
chr642856156AG0.00190RPL7L1+TRUEAluSzSINE,Alu
chr1569981CA4.36771E-05.FALSE
chr43514695AG1.35580E-12LRPAP1-FALSE
chr1220870440GA0.00193C1orf115+FALSE
chr154692334TC0.00021SSBP3-FALSE(T)nSINE,Alu
chrX123045407AG0.00153XIAP+TRUEAluJoSINE,Alu
chr119586520AG0.00659MRTO4+TRUEAluSzSINE,Alu
chr683921257GT0.00876ME1-FALSE
chr286251151TC0.00763.FALSEAluSxSINE,Alu
chr1749042325TC0.00798SPAG9-TRUEAluJbSINE,Alu
chr224494671TC0.00244ITSN2-FALSE(TATCCT)nSINE,Alu
chr19328242AG5.63395E-05H6PD+TRUEAluJrSINE,Alu
chr6151678865TG0.00016AKAP12+FALSE(T)nSINE,Alu
chr150906945CT0.00178FAF1-FALSE
chr2143638998GA0.00496KYNU+FALSE
chr468483513GA3.54156E-05UBA6-FALSE
chr1145688664AT0.00087NBPF20,NBPF10,RNF115+FALSE
chr5178986978CG0.00341RUFY1+FALSE
chr1251325237AG5.73531E-05METTL7A+TRUEAluSq2SINE,Alu
chr5176883676AT0.00456DBN1-FALSE(A)nSINE,Alu
chr136067821TC8.78017E-05PSMB2-TRUEAluSzSINE,Alu
chr1671681515AG0.00308PHLPP2-FALSE
chr1946053369TC0.00504OPA3-TRUEAluSx1SINE,Alu
chr3194789330GT0.00699XXYLT1-FALSEAluJrSINE,Alu
chr133068435AG0.00081ZBTB8A+TRUEAluYSINE,Alu
chr146500251GA0.00205MAST2+FALSE
chr5180682607AC0.00161CTC-338M12.4+FALSE
chr177124772GA0.00175ACADVL+FALSE
chr1755752444CT0.00000MSI2+FALSE
chr237076498AC0.00797STRN-FALSE
chr362282908CT0.00281PTPRG-AS1-FALSE
chr1146033660CA0.00091NBPF20,NBPF10,NBPF25P,NBPF11+,-FALSE
chr457327058AG0.00315PAICS+TRUEAluSx1SINE,Alu
chr5177658896AC0.00642PHYKPL-FALSE
chr7100279138AT0.00741GIGYF1-FALSEA-richSINE,Alu
chr133071096AG0.00139ZBTB8A+TRUEAluSx1SINE,Alu
chr457326236AG0.00699PAICS+TRUEAluJrSINE,Alu
chr110521126TC0.00560DFFA-TRUEAluYSINE,Alu
chr229135468CG0.00217WDR43+FALSE
chr1145511797TG0.00894NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSE(T)nSINE,Alu
chr146076481AG0.00144NASP+TRUEAluSxSINE,Alu
chr18877520AT0.00308RERE-FALSE
chr1143399181TG0.00832.FALSE
chr11431502GA0.00127ATAD3B+FALSE
chrM5265CA0.00026.FALSE
chr19294903CG0.00147H6PD+FALSE
chr111181327CT0.00525MTOR-FALSE
chr135648714AT0.00841SFPQ-FALSE
chrX77083641TC0.00055MAGT1-TRUEAluSz6SINE,Alu
chr1624807247GA0.00417TNRC6A+FALSE
chr146076529AG0.00336NASP+TRUEAluSxSINE,Alu
chr2206983298TC0.00811.FALSEAluJbSINE,Alu
chr537291446TC6.87884E-05.FALSEAluSx3SINE,Alu
chr1168220535AG0.00665.FALSEAluSz6SINE,Alu
chr110437811AG0.00800KIF1B+TRUEAluSgSINE,Alu
chr127202963CT0.00106.FALSEAluSq2SINE,Alu
chr1185014720AG0.00989RNF2+FALSE
chr1161930908GA0.00083ATF6+FALSE
chr352084404AT0.00032DUSP7-FALSE(A)nSINE,Alu
chr1145369556AG0.00086NBPF20,NBPF10+TRUEL1MC4SINE,Alu
chr1585190470GT8.70862E-05WDR73-FALSE
chr1079800439AT0.00380RPS24+FALSE
chr2200792052GA0.00378C2orf69+FALSE
chr1156499969TC8.53229E-06IQGAP3-FALSE
chr119542401TC0.00071LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr1160967899TC0.00661F11R-TRUEAluSpSINE,Alu
chr312624763TC1.62214E-06MKRN2+FALSE
chr6116600810GA0.00028DSE,TSPYL1+,-FALSE
chr110517508TC0.00034.FALSEAluSx1SINE,Alu
chr16279957AG0.00814RNF207+TRUEAluSpSINE,Alu
chr1220323448CT0.00986RAB3GAP2-FALSE
chr1153587308CT0.00077S100A14-FALSE
chr774169234GT8.95897E-05GTF2I+FALSE
chr1115313028TA0.00448SIKE1-FALSEAluSx1SINE,Alu
chr189447882AG0.00103KYAT3,RBMXL1-FALSE
chr1128134974CA0.00479METTL15+FALSE
chr127182751CA0.00122.FALSE
chr110517352TC1.76732E-06.FALSEAluJrSINE,Alu
chr128835937AG0.00121SNHG3,RCC1+TRUEAluSx4SINE,Alu
chr1015120275TC0.00017ACBD7-TRUEL1PA7SINE,Alu
chr4123859284CT0.00034SPATA5+FALSE
chr642094498TC0.00931C6orf132-TRUEAluSq2SINE,Alu
chr5125962528AG0.00924PHAX+TRUEAluSzSINE,Alu
chr2128601490TC0.00013.FALSEAluJrSINE,Alu
chr1156518379GA0.00498IQGAP3-FALSE
chr344839350AC0.00837KIF15+FALSE
chr399886662GA0.00011CMSS1+FALSE
chr1144521099AG0.00049NBPF20+FALSE
chr11419690AG0.00464ATAD3B+TRUEAluYk2SINE,Alu
chr297884961GA0.00668ANKRD36+FALSE
chr812879707TG0.00780KIAA1456+FALSE
chr6166824706AT0.00048RPS6KA2-FALSE(T)nSINE,Alu
chr195658346TA0.00961TMEM56-RWDD3,LOC101928118,TMEM56+,-FALSE
chr187200770CT0.00623SH3GLB1+FALSE
chr152520864AT0.00041TXNDC12-FALSE
chr116576290GA0.00104FBXO42-FALSEA-richSINE,Alu
chr5122359498AC0.00038PPIC-FALSE(AC)nSINE,Alu
chr123636278AT0.00121HNRNPR-FALSE
chr1762109CT0.00026LINC00115-FALSE
chr2191829133GA0.00097GLS+FALSE
chr1153909069GC5.11201E-05DENND4B-FALSE
chr1338936619GT0.00212UFM1+FALSE
chr16473294AG0.00013.FALSEArthur1CSINE,Alu
chr555235967AG0.00639IL6ST-FALSE(AT)nSINE,Alu
chr1542861705AG0.00518HAUS2+TRUEAluJbSINE,Alu
chr1745761101GT0.00296.FALSE
chr1923542304TC2.38814E-05ZNF91-TRUEAluYSINE,Alu
chr2174090928GC0.00852ZAK,MLK7-AS1+,-FALSE
chr1146400122CG0.00190NBPF20,NBPF10,NBPF25P,NBPF12+FALSE
chr119543457TC0.00718LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr174672474GA0.00150FPGT-TNNI3K,FPGT+FALSEX12_DNASINE,Alu
chr1143189486AG0.00122LOC102723769-FALSE
chr9103064530GA0.00036TEX10-FALSE
chr165898269CT0.00399LEPR,LEPROT+FALSEMIRcSINE,Alu
chr124296869GT0.00505.FALSEAluSgSINE,Alu
chr1749041732TC0.00135SPAG9-TRUEAluSxSINE,Alu
chr1648386442AG0.00964LONP2,MIR5095+TRUEAluSz6SINE,Alu
chr552388458AT0.00152ITGA2+FALSE
chr19163110TC4.21626E-05.FALSEFRAMSINE,Alu
chr136067838TC0.00348PSMB2-TRUEAluSzSINE,Alu
chr119238556GA6.03260E-07IFFO2-FALSE
chr1207247477TC0.00078PFKFB2+FALSEMER5BSINE,Alu
chr5141691248CT0.00360SPRY4-FALSE
chr1201860626AG0.00599SHISA4+FALSE
chr16283305TC0.00496ICMT-TRUEAluSx3SINE,Alu
chr110518733TC0.00541.FALSEAluSx1SINE,Alu
chr1227848051CA0.00245PPFIBP1+FALSE
chr690346418AT1.30335E-05LYRM2-FALSEAluSzSINE,Alu
chr126143731AG0.00337SEPN1+FALSEAluSxSINE,Alu
chr136067925TC2.33961E-06PSMB2-TRUEAluSzSINE,Alu
chrX118673382TC0.00021CXorf56-TRUEAluSzSINE,Alu
chr167874689TC0.00338SERBP1-TRUEAluSx3SINE,Alu
chr1563988357CG0.00539HERC1-FALSE
chr345748599TA0.00470SACM1L+FALSE
chr110367424GA0.00286KIF1B+FALSEAluSxSINE,Alu
chr128661656AG0.00319MED18+TRUEAluSgSINE,Alu
chr145279898CT0.00271.FALSE(TCTT)nSINE,Alu
chr1171943768GT1.87744E-06INPPL1+FALSE
chr255516911AG0.00719CCDC88A-FALSE(GA)nSINE,Alu
chr237328075TC2.30710E-05.FALSE
chr794297293GT0.00573PEG10+FALSE
chr579923990TC0.00812DHFR-TRUEAluSpSINE,Alu
chr310322521TC0.00531TATDN2+FALSE
chr19160975TC0.00858.FALSEAluJbSINE,Alu
chr117394775GA0.00103PADI2-FALSE
chr1911256626TC1.61091E-07SPC24-TRUEAluJr4SINE,Alu
chr193617406AT0.00275TMED5-FALSE
chr124296874GA0.00627.FALSEAluSgSINE,Alu
chr314986104TC0.00307FGD5-AS1-TRUEFLAM_CSINE,Alu
chr629857578AG0.00280.FALSE
chr116890155CT0.00388NBPF1-FALSE
chr46710356TC0.00046MRFAP1L1-FALSE
chr1674655596TG0.00028RFWD3-FALSEAluSxSINE,Alu
chr1200375404TG0.00030ZNF281-FALSE
chr1104097685CT0.00721RNPC3,AMY2B+FALSE
chr456291623GT0.00490TMEM165+FALSE
chr4128756579AG0.00501.FALSEAluSxSINE,Alu
chr1168218522AG9.71811E-05.FALSEAluSzSINE,Alu
chr1774560725TC0.00476SNHG16+FALSETHE1BSINE,Alu
chr146662492GA9.93078E-05POMGNT1-FALSE
chr811701485TC0.00027CTSB-TRUEAluSx1SINE,Alu
chr1591044381CA0.00440IQGAP1+FALSE
chr1936260451AG0.00854.FALSEAluYSINE,Alu
chr193827991AC0.00533DR1+FALSE
chr895805071AG1.12730E-06DPY19L4+TRUEAluYf1SINE,Alu
chr1154554950GT0.00599ADAR-FALSE
chr255452459GT5.59903E-07CLHC1-FALSE
chr7129474438CT0.00034UBE2H-FALSE
chr119543456TC0.00386LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr1765334885TC2.77388E-05PSMD12-TRUEAluSqSINE,Alu
chr6150046734TC0.00248NUP43-FALSE
chr1765335362TC3.02375E-05PSMD12-TRUEAluSxSINE,Alu
chr77918285GA0.00255UMAD1+FALSE
chr194423353GA0.00057CHAF1A+FALSEGA-richSINE,Alu
chr1145688664AT0.00298NBPF20,NBPF10,RNF115+FALSE
chr4108834529GT1.01126E-06SGMS2,LOC101929595+,-FALSE
chr8144940794GC0.00038EPPK1-FALSE
chr123833607AT0.00890E2F2-FALSE
chr3113528895AT0.00191ATP6V1A+FALSEAluSpSINE,Alu
chr1145209366AG0.00499NBPF20,NOTCH2NL+FALSE
chr138002068CT0.00962SNIP1-FALSE
chr314986111TC0.00999FGD5-AS1-TRUEFLAM_CSINE,Alu
chr110517314TC0.00802.FALSEAluJrSINE,Alu
chr344485914TC0.00920ZNF445-FALSEMIRbSINE,Alu
chr1179044216AG0.00277FAM20B+TRUEAluSxSINE,Alu
chr366428450GA0.00355SLC25A26+FALSE
chr4140394600GA0.00950RAB33B+FALSE
chr1179044309AG0.00558FAM20B+TRUEAluSxSINE,Alu
chr11650832AG0.00241CDK11B,CDK11A-FALSE
chr1075008841TC0.00088DNAJC9-AS1,MRPS16+,-FALSEAluJrSINE,Alu
chr2217366534AG0.00733.FALSEAluSzSINE,Alu
chr1231468953GA0.00085EXOC8-FALSE
chr136067760TC0.00024PSMB2-TRUEAluSzSINE,Alu
chr848889705AG0.00339MCM4+TRUEAluSx3SINE,Alu
chr122419434TG0.00649CDC42+FALSE
chr3196077460GT0.00416.FALSE
chr167468124GC0.00201SLC35D1-FALSE
chr128836973AG0.00017SNHG3,RCC1+TRUEAluScSINE,Alu
chr16314822TC0.00300GPR153-FALSE
chr19161550GA0.00043.FALSE
chr171531596AG1.07667E-05ZRANB2-AS1,ZRANB2+,-FALSE
chr3196079691TC0.00507.FALSEAluScSINE,Alu
chrX77083846TC0.00668MAGT1-TRUEAluSzSINE,Alu
chr1160967754TC0.00563F11R-TRUE(T)nSINE,Alu
chr139305002AT0.00089RRAGC-FALSE
chr136534830AG0.00470.FALSEAluJoSINE,Alu
chr194352553CT0.00136GCLM-FALSEAluSx1SINE,Alu
chr1160967855TC0.00050F11R-TRUEAluSpSINE,Alu
chr276672504AG2.97414E-06.FALSE7SKSINE,Alu
chr1610623558TC0.00103EMP2-TRUEAluSpSINE,Alu
chr1228880098TA4.07865E-05RHOU+FALSE
chr11251841TC0.00222CPSF3L-TRUEAluSq2SINE,Alu
chr1101442211TC0.00590SLC30A7+FALSE
chr1833831189CA0.00763MOCOS+FALSE
chr1946053172TC0.00098OPA3-TRUEAluSx1SINE,Alu
chr1143186597GA0.00644LOC102723769-FALSE
chr195362514GT7.06346E-05CNN3-FALSE
chr146076467AG0.00118NASP+TRUEAluSxSINE,Alu
chr1899810GA3.12519E-10KLHL17+FALSE
chr1061548856TC0.00067CCDC6-FALSE
chr110521103TC0.00788DFFA-TRUEAluYSINE,Alu
chr6138413269AG0.00743PERP-FALSE
chr116893686GC0.00823NBPF1-FALSE
chr42940486TC7.87098E-05NOP14-AS1,NOP14+,-FALSEAluJoSINE,Alu
chr128920944AG0.00446RAB42+TRUEAluSxSINE,Alu
chr10104417853TA0.00393TRIM8+FALSE(AAT)nSINE,Alu
chr1918476232AG0.00189PGPEP1+TRUEAluJbSINE,Alu
chr324019989CT0.00339NR1D2+FALSE
chr13730400TC6.07343E-08CEP104-TRUEAluSx3SINE,Alu
chr3120046601GT0.00282LRRC58-FALSEAluSxSINE,Alu
chr613790931TC0.00122MCUR1-TRUEAluSx1SINE,Alu
chr110520888CT0.00958DFFA-FALSE
chr1465400786TG0.00077CHURC1-FNTB,CHURC1+FALSEAluSxSINE,Alu
chr556177850AT0.00856MAP3K1+FALSE(CAA)nSINE,Alu
chr2206986245TC0.00979.FALSEAluSzSINE,Alu
chr1202993198CA0.00754TMEM183A+FALSE
chr1958375157AG0.00408ZNF587+TRUEAluSx4SINE,Alu
chr116954981CA0.00876CROCCP2-FALSE
chr146032311AG0.00362AKR1A1+FALSE
chr63021448TC0.00126HTATSF1P2-TRUEAluJr4SINE,Alu
chr237328034TC0.00380.FALSE
chr2219100706AG0.00874ARPC2+TRUEAluSx1SINE,Alu
chr555235866TA0.00073IL6ST-FALSE
chr348787052TC0.00631PRKAR2A-TRUEAluSx3SINE,Alu
chr11111431662TA0.00204LAYN+FALSE
chr1110566328AT0.00515AHCYL1+FALSE
chr5149829075AG0.00277RPS14-FALSE
chr775145495GA5.48132E-07PMS2P3-FALSE
chr1228107281GA0.00833.FALSE
chr1162557871GC0.00273TMEM179B,TMEM223+,-FALSE
chr1197475873GA0.00844DENND1B-FALSE
chr135644504AT0.00242SFPQ-FALSE
chr2128602507TC4.02376E-05.FALSEAluSq2SINE,Alu
chr337031951GA0.00914EPM2AIP1-FALSE(A)nSINE,Alu
chr146032974TC0.00141AKR1A1+FALSE
chr1112266787GT0.00642FAM212B-FALSE
chr2206987597TC0.00085.FALSEAluJbSINE,Alu
chr192148839TC0.00259TGFBR3-FALSE
chr116939857CT0.00542NBPF1-FALSE
chr1145273345TC0.00640NBPF20,NOTCH2NL+FALSE
chr1109181317CG0.00597FAM102B+FALSE
chr145975345AG0.00227MMACHC+TRUEAluSg7SINE,Alu
chr1160966353TC0.00385F11R-TRUEAluSgSINE,Alu
chr3195415493CT0.00126LINC00969,SDHAP2+FALSEL1ME2SINE,Alu
chr177485341CA0.00701CD68,LOC100996842+,-FALSE
chr6150045755TC0.00041NUP43-TRUEAluSqSINE,Alu
chr7140153699CA0.00075MKRN1-FALSE
chr153359181AG0.00699ZYG11A+TRUEAluSxSINE,Alu
chr16583383TC0.00305NOL9-TRUEAluSqSINE,Alu
chr314986098TC0.00000FGD5-AS1-TRUEFLAM_CSINE,Alu
chr145976723TC0.00340MMACHC,PRDX1+,-FALSE
chr441956413CT0.00543TMEM33+FALSE
chr132508478CT0.00509KHDRBS1+FALSE
chr1109475706TC0.00375GPSM2,CLCC1+,-FALSEAluJoSINE,Alu
chr315838717AC0.00673ANKRD28-FALSE(A)nSINE,Alu
chr237429627AG0.00330CEBPZOS,CEBPZ+,-FALSEAluSzSINE,Alu
chr5125961534AG0.00233PHAX+TRUEAluSz6SINE,Alu
chr2120022387CT0.00728STEAP3+FALSE
chr1109816462CT0.00083CELSR2+FALSE
chr133148789AG0.00568SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr119934758CG1.75422E-05MINOS1,MINOS1-NBL1,RPS14P3+FALSE
chr153289547AG0.00352ZYG11B+TRUEAluSzSINE,Alu
chr1214529234TC0.00062PTPN14-TRUE
chr1939440966TC0.00011FBXO17-FALSE
chr119543785TC0.00492LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr116841620TA0.00023.FALSE
chr540831098TC3.69541E-05.FALSEAluSx3SINE,Alu
chr1179829595TC0.00188TOR1AIP2-TRUEAluJrSINE,Alu
chr1146650337GT0.00589PDIA3P1+FALSE
chr220424655GA0.00193SDC1-FALSE
chr299812988AG0.00474MRPL30+TRUEAluJbSINE,Alu
chr1075009921TC5.40286E-05DNAJC9-AS1,MRPS16+,-FALSEAluYSINE,Alu
chr124128467CT0.00086HMGCL-FALSE
chr315113655TC0.00025RBSN-TRUEAluSz6SINE,Alu
chr185732582GA0.00371BCL10-FALSEAluSz6SINE,Alu
chr593018903TA5.97109E-08FAM172A-FALSE(TCA)nSINE,Alu
chr136534784AG0.00369.FALSEAluJoSINE,Alu
chr330735330GT0.00401TGFBR2+FALSE
chr237330527TC0.00284.FALSEAluSq2SINE,Alu
chr1075008797TC0.00824DNAJC9-AS1,MRPS16+,-FALSEAluJrSINE,Alu
chr110517300TC0.00113.FALSEAluJrSINE,Alu
chr10119766673TG0.00082RAB11FIP2-FALSE
chr1288454641AT0.00753CEP290-FALSE
chr1145513094AG0.00633NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr12335348CT0.00018RER1+FALSE
chr2128605225GA0.00401POLR2D-FALSE
chr271376999GA0.00546MPHOSPH10+FALSE
chr136068243TC0.00217PSMB2-TRUEAluScSINE,Alu

Differential Expression Gene Analysis