RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr2	37329261	T	C	0.00123		.	FALSE	AluJr4	SINE,Alu
chr1	16890639	C	T	8.47214E-05	NBPF1	-	FALSE
chr1	10520487	T	C	0.00710		.	FALSE	AluSx1	SINE,Alu
chr9	111781015	A	C	0.00853	TMEM245	-	FALSE
chr3	195963397	G	A	0.00037		.	FALSE
chr17	57279273	A	G	0.00513	PRR11	+	TRUE	AluSq2	SINE,Alu
chr11	118888992	C	G	0.00222	RPS25	-	FALSE
chr7	16640491	G	A	0.00478	ANKMY2	-	FALSE
chr5	65120054	C	T	0.00625	NLN	+	FALSE
chr5	150647719	T	C	0.00112	GM2A	+	FALSE	AluSc	SINE,Alu
chr1	20978024	C	A	0.00175	PINK1-AS	-	FALSE
chr3	120128940	A	G	0.00434	FSTL1	-	FALSE
chr1	20977748	T	G	0.00474	PINK1,PINK1-AS	+,-	FALSE
chr1	569874	C	T	0.00072		.	FALSE
chr16	10624966	T	C	3.33519E-08	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	28826128	A	G	0.00483	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr17	5336210	T	C	0.00868	RPAIN,C1QBP	+,-	FALSE
chr1	148595665	A	G	0.00141	NBPF15	+	TRUE	L1MC4	SINE,Alu
chr5	68936027	G	A	0.00868		.	FALSE
chrX	123045407	A	G	0.00153	XIAP	+	TRUE	AluJo	SINE,Alu
chr1	44171144	T	A	0.00108	KDM4A-AS1,KDM4A	+,-	FALSE
chr6	29911284	T	C	0.00019		.	FALSE
chr21	34729969	A	G	0.00077	IFNAR1	+	TRUE	AluSg7	SINE,Alu
chr1	23636277	A	T	0.00188	HNRNPR	-	FALSE
chr1	68940887	T	G	0.00293	DEPDC1	-	FALSE	MIR	SINE,Alu
chr3	15114486	T	C	3.99101E-05	RBSN	-	TRUE	AluY	SINE,Alu
chr1	46165408	T	C	0.00106	IPP	-	TRUE	FRAM	SINE,Alu
chr12	133334739	T	C	0.00388	ANKLE2	-	TRUE	AluSz	SINE,Alu
chr2	9770610	A	G	0.00486	YWHAQ	-	FALSE
chr1	161559466	C	A	0.00491	FCGR2C	+	FALSE
chr6	42048128	G	T	0.00604	TAF8	+	FALSE	AluSq2	SINE,Alu
chr1	145689566	A	G	0.00331	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr1	7828190	A	C	0.00049	CAMTA1	+	FALSE	(A)n	SINE,Alu
chr3	28390351	A	G	0.00200	AZI2	-	FALSE
chr3	45722253	A	G	0.00663	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr1	38326728	T	C	0.00079	INPP5B	-	TRUE	AluJr	SINE,Alu
chr4	190881971	A	C	0.00183	FRG1	+	FALSE
chr3	12942852	C	A	0.00458	IQSEC1	-	FALSE
chr21	34728113	A	G	0.00531	IFNAR1	+	TRUE	AluSc	SINE,Alu
chr12	56632550	G	A	0.00027	ANKRD52	-	FALSE
chr1	28825331	A	G	0.00024	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr1	204521580	A	G	0.00469	MDM4	+	TRUE	AluSg	SINE,Alu
chr1	17733268	T	C	0.00472	RCC2	-	FALSE
chr1	241796950	C	A	1.24743E-05	OPN3,CHML	-	FALSE
chr1	19543353	T	C	0.00036	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr2	215674224	G	A	9.97816E-05	BARD1	-	FALSE
chr18	24127008	T	G	0.00800	KCTD1	-	FALSE	(TGG)n	SINE,Alu
chr1	55619569	C	T	0.00477	USP24	-	FALSE
chr3	148748197	T	A	0.00026	HLTF	-	FALSE
chr1	14113455	G	A	0.00647	PRDM2	+	FALSE
chr1	120165040	T	C	0.00107	ZNF697	-	FALSE
chr1	65900357	G	T	0.00041	LEPR,LEPROT	+	FALSE
chr6	27327349	C	G	0.00359	ZNF204P	-	FALSE
chr1	206566948	G	A	0.00228	SRGAP2	+	FALSE
chr4	17804740	T	C	0.00015	DCAF16	-	TRUE	AluSx	SINE,Alu
chr14	64152516	T	C	0.00011	SGPP1	-	FALSE	(TA)n	SINE,Alu
chr16	24807247	G	A	0.00417	TNRC6A	+	FALSE
chr1	16932931	C	A	0.00191	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	203277253	A	G	0.00624	BTG2	+	FALSE
chr7	924639	A	G	0.00285	GET4	+	TRUE	AluJb	SINE,Alu
chr9	32425898	T	C	0.00177	ACO1	+	FALSE
chr1	6659505	G	A	0.00405	KLHL21	-	FALSE
chr1	16952481	A	G	5.15865E-05	CROCCP2	-	FALSE
chr1	28825370	A	G	0.00617	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr7	131188652	G	C	0.00684	PODXL	-	FALSE	MIR3	SINE,Alu
chr1	36067760	T	C	0.00258	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	183218868	T	G	0.00091	NMNAT2	-	FALSE
chr4	165998019	T	C	0.00849	TMEM192	-	TRUE	AluSx	SINE,Alu
chr1	200375005	A	T	0.00202	ZNF281	-	FALSE
chr1	1667419	A	C	0.00028	SLC35E2	-	FALSE	AluSg	SINE,Alu
chr12	120898728	A	G	0.00947	GATC	+	TRUE	AluY	SINE,Alu
chr1	1595500	T	C	0.00845	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr1	68167532	A	C	0.00916	GNG12	-	FALSE
chr2	44459528	G	A	0.00100	PPM1B	+	FALSE
chr1	16889620	T	C	0.00884	NBPF1	-	FALSE
chr9	36216895	T	C	0.00130	GNE	-	TRUE	AluY	SINE,Alu
chr1	21793735	C	G	0.00405	NBPF3	+	FALSE
chr4	2940371	T	C	0.00150	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	36068370	T	C	0.00067	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	53679610	G	A	0.00217	CPT2	+	FALSE	AluSz	SINE,Alu
chr3	45960556	C	T	0.00500	FYCO1	-	FALSE
chr2	37431521	A	G	0.00783	CEBPZOS,CEBPZ	+,-	FALSE	AluSc	SINE,Alu
chr1	19071752	T	C	0.00503	PAX7	+	FALSE
chr1	214531239	C	T	6.46771E-05	PTPN14	-	FALSE
chr3	44791343	T	C	0.00220	KIAA1143	-	FALSE	AluJr	SINE,Alu
chr21	18940466	A	T	0.00169	CXADR	+	FALSE	AluY	SINE,Alu
chr1	58999651	T	G	0.00980	OMA1	-	FALSE
chr3	45722253	A	G	0.00670	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr1	6694574	G	A	0.00983	THAP3,DNAJC11	+,-	FALSE
chr1	21766776	G	C	0.00343	NBPF3	+	FALSE
chr1	74672926	T	A	0.00159	FPGT-TNNI3K,FPGT	+	FALSE	Kanga1d	SINE,Alu
chr1	87811105	G	A	0.00025	LMO4	+	FALSE
chr1	16958833	T	A	0.00765		.	FALSE
chr1	144930596	C	A	0.00578	NBPF20,PDE4DIP	+,-	FALSE
chr1	56961756	A	G	0.00682	PLPP3	-	FALSE
chr4	185309400	T	A	0.00250	IRF2	-	FALSE	(GGGAT)n	SINE,Alu
chr16	81064629	A	G	6.04166E-07	CENPN	+	TRUE	AluSg	SINE,Alu
chr1	15992470	G	A	0.00605		.	FALSE
chr1	33148691	A	G	0.00032	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr3	197682724	T	A	0.00556	IQCG	-	FALSE
chr2	242212177	C	T	2.31719E-05	HDLBP	-	FALSE
chr4	17629934	T	C	0.00178		.	FALSE	MER90	SINE,Alu
chr2	86364707	G	T	0.00131	PTCD3	+	FALSE
chr1	26143725	A	T	0.00920	SEPN1	+	FALSE	AluSx	SINE,Alu
chr1	32638906	C	T	5.73102E-10	KPNA6	+	FALSE
chr6	31324202	T	A	0.00300		.	FALSE
chr1	10520378	T	C	0.00743		.	FALSE	AluSx1	SINE,Alu
chr2	7036682	A	T	0.00335	RSAD2	+	FALSE
chr1	28835934	A	G	0.00596	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr7	38764332	T	C	0.00209	VPS41	-	TRUE	AluSp	SINE,Alu
chr1	10521170	T	C	0.00104	DFFA	-	TRUE	AluY	SINE,Alu
chr1	16893763	T	C	0.00996	NBPF1	-	FALSE
chr1	120695202	C	A	0.00033		.	FALSE
chr1	1650807	T	C	0.00096	CDK11B,CDK11A	-	FALSE
chr4	159176109	C	A	0.00042	TMEM144	+	FALSE	MIR	SINE,Alu
chr1	184762524	T	C	0.00778	FAM129A	-	TRUE	AluSz	SINE,Alu
chr1	19543353	T	C	0.00101	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	118066459	A	G	0.00788	MAN1A2	+	FALSE
chr1	11347155	C	T	0.00273	UBIAD1	+	FALSE
chr7	91742141	T	A	0.00620	CYP51A1	-	FALSE	AluSx3	SINE,Alu
chr3	195961254	C	T	0.00119		.	FALSE
chr1	225974645	A	G	0.00984	SRP9	+	TRUE	AluJr	SINE,Alu
chr1	206637133	C	T	0.00909	SRGAP2	+	FALSE
chr1	186946912	G	A	0.00414	PLA2G4A	+	FALSE
chr1	19543465	T	C	0.00117	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr4	120219239	T	A	0.00707	C4orf3	-	FALSE
chr1	2161135	A	G	0.00028	SKI	+	FALSE
chr5	76371820	A	G	0.00162		.	FALSE
chr1	67468124	G	C	0.00201	SLC35D1	-	FALSE
chr17	42880190	T	C	0.00284	GJC1	-	TRUE	AluJb	SINE,Alu
chr1	114940216	T	G	0.00674	TRIM33	-	FALSE	(T)n	SINE,Alu
chr1	26887592	T	C	0.00354	RPS6KA1	+	FALSE
chr1	59148136	T	C	0.00244	MYSM1	-	FALSE
chr1	46016687	T	C	0.00296	AKR1A1	+	FALSE
chr1	201975173	G	T	0.00053	RNPEP	+	FALSE
chr3	105294534	A	G	1.10929E-06	ALCAM	+	FALSE
chr1	19232017	T	G	0.00723	IFFO2	-	FALSE
chr2	24224134	A	G	0.00333		.	FALSE	AluSp	SINE,Alu
chr1	179832838	A	G	0.00018	TOR1AIP2	-	FALSE	MLT1L	SINE,Alu
chr1	109856391	G	C	0.00569	SORT1	-	FALSE
chr1	27204865	T	C	0.00042		.	FALSE	AluSx	SINE,Alu
chr1	27992800	C	A	5.71645E-05	IFI6	-	FALSE	FAM	SINE,Alu
chr1	53288862	A	G	0.00155	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr3	10192784	A	G	1.73909E-05	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	788840	T	C	0.00299	LINC01128	+	FALSE
chr2	27279013	A	G	6.08626E-07	AGBL5	+	FALSE
chr6	134492485	C	T	0.00245	SGK1	-	FALSE
chr3	44791398	T	C	0.00204	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr7	66105163	C	G	0.00594	KCTD7	+	FALSE
chr19	57804362	G	A	0.00191	ZNF460	+	FALSE
chr12	123346997	G	C	0.00275	HIP1R	+	FALSE
chr1	6282237	T	C	0.00455	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	144606963	G	T	0.00337	NBPF20	+	FALSE
chr1	16935130	C	T	0.00288	NBPF1	-	FALSE
chr10	101992810	T	C	0.00456	CWF19L1	-	TRUE	AluJb	SINE,Alu
chr1	160966351	T	C	0.00034	F11R	-	TRUE	AluSg	SINE,Alu
chr5	154196577	C	T	0.00906	LARP1	+	FALSE
chr1	40538317	C	A	0.00178	CAP1	+	FALSE
chr1	10517313	T	C	0.00015		.	FALSE	AluJr	SINE,Alu
chr3	40353799	G	T	0.00906	EIF1B	+	FALSE
chr1	156878044	G	A	9.48586E-05	PEAR1	+	FALSE
chr3	5258236	G	C	3.37681E-06	EDEM1	+	FALSE
chr1	9161179	T	C	0.00570		.	FALSE	AluSx	SINE,Alu
chr1	44818549	C	T	0.00108	ERI3	-	FALSE
chr3	15112631	A	G	0.00019	RBSN	-	FALSE
chr3	15114486	T	C	0.00342	RBSN	-	TRUE	AluY	SINE,Alu
chr10	89004545	T	C	0.00057	NUTM2A-AS1	-	FALSE	MSTA	SINE,Alu
chr1	19586532	A	G	0.00166	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	226171340	T	C	0.00462	SDE2	-	TRUE	BC200	SINE,Alu
chr9	117050998	G	A	0.00326	COL27A1	+	FALSE
chr1	144595943	A	G	0.00050	NBPF20	+	FALSE	AluJb	SINE,Alu
chr6	122765962	T	A	0.00362	SERINC1	-	FALSE
chr1	6282587	T	C	7.24363E-07	ICMT	-	TRUE
chr1	152187183	C	A	0.00373	HRNR	-	FALSE
chr1	19543249	T	C	0.00559	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	155161736	G	A	0.00088	MUC1	-	FALSE
chr9	131872860	C	T	0.00141	CRAT	-	FALSE
chr10	65382718	G	A	0.00984	REEP3	+	FALSE	AluSc	SINE,Alu
chr17	38798073	T	G	0.00692	SMARCE1	-	FALSE
chr3	47554503	T	G	0.00720	ELP6	-	FALSE	AluSx	SINE,Alu
chr1	155851620	A	G	6.99218E-05	SYT11	+	TRUE	AluSq2	SINE,Alu
chr7	6500726	A	T	0.00560	KDELR2	-	FALSE
chr3	44791293	A	T	0.00031	KIAA1143	-	FALSE	AluJr	SINE,Alu
chr16	53525857	A	G	0.00093	AKTIP	-	FALSE
chr1	150448374	T	A	0.00607	RPRD2	+	FALSE
chr9	132268359	A	G	0.00436	LINC00963	+	TRUE	AluJb	SINE,Alu
chr1	16889423	G	C	6.70783E-10	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr1	52253793	C	T	0.00966	OSBPL9	+	FALSE
chr12	109887765	T	G	0.00091	KCTD10	-	FALSE
chr3	48894565	T	A	0.00142	SLC25A20	-	FALSE
chr1	26603883	G	A	0.00088	CEP85	+	FALSE
chr1	1251847	T	C	0.00999	CPSF3L	-	FALSE	AluSq2	SINE,Alu
chr3	58112440	A	G	8.00661E-07	FLNB	+	FALSE
chr22	36677551	T	C	7.06365E-05	MYH9	-	FALSE
chr1	33960062	A	G	0.00064	ZSCAN20	+	FALSE
chr19	50410816	G	T	0.00050	IL4I1,NUP62	-	FALSE	AluSz	SINE,Alu
chr1	45671430	A	T	0.00041	ZSWIM5	-	FALSE
chr4	49591495	G	C	0.00893		.	FALSE
chr1	16529016	C	T	0.00024	ARHGEF19	-	FALSE
chr1	47840938	A	G	0.00089	CMPK1	+	FALSE
chr1	1152601	A	G	0.00075	SDF4	-	FALSE
chr9	102977295	C	T	3.70755E-05	INVS	+	FALSE	HERVL40-int	SINE,Alu
chr1	36067760	T	C	0.00021	PSMB2	-	TRUE	AluSz	SINE,Alu
chr3	37407770	G	T	0.00530	GOLGA4	+	FALSE
chr10	8116464	G	A	0.00695	GATA3	+	FALSE	A-rich	SINE,Alu
chr11	65404877	G	A	0.00106	PCNX3	+	FALSE
chr1	46165437	T	C	0.00090	IPP	-	TRUE	FRAM	SINE,Alu
chr2	103333654	A	T	0.00488	MFSD9	-	FALSE	AluYm1	SINE,Alu
chr1	54691922	T	A	0.00224	SSBP3	-	FALSE
chr1	15993713	A	T	7.45571E-05		.	FALSE	AluSx4	SINE,Alu
chr1	24934236	A	G	0.00596	NCMAP	+	TRUE	AluSz6	SINE,Alu
chr19	35741552	C	T	0.00165	LSR	+	FALSE
chr7	17384440	A	G	0.00271	AHR	+	TRUE	AluSx	SINE,Alu
chr1	11084103	T	A	0.00118	TARDBP	+	FALSE
chr5	72801329	T	A	0.00073	BTF3	+	FALSE
chr4	5710647	A	G	5.78692E-06	EVC2	-	FALSE
chr4	2940164	T	C	0.00115	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	19543356	T	C	0.00256	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	23636277	A	T	0.00295	HNRNPR	-	FALSE
chr6	114178851	T	C	0.00056	MARCKS	+	FALSE	(TGCCGC)n	SINE,Alu
chr5	40826638	C	A	0.00749	LOC100506548	-	FALSE	LTR78	SINE,Alu
chr7	105162638	G	C	0.00155	PUS7	-	FALSE
chr5	149363219	A	G	0.00866	SLC26A2	+	FALSE	AluJr	SINE,Alu
chr4	1387223	A	G	0.00155	CRIPAK	+	TRUE	AluSx	SINE,Alu
chr1	109818162	T	C	0.00253	CELSR2	+	FALSE
chr1	28218100	T	C	0.00080	RPA2	-	FALSE
chr9	125609940	T	A	0.00044		.	FALSE
chr1	46075664	A	G	0.00842	NASP	+	TRUE	AluSx4	SINE,Alu
chr2	11323078	C	T	0.00539	ROCK2	-	FALSE
chr5	177019196	G	C	0.00509	TMED9	+	FALSE	(GCG)n	SINE,Alu
chr1	51873951	G	A	0.00588	EPS15	-	FALSE
chr1	6695423	T	G	9.25675E-05	THAP3,DNAJC11	+,-	FALSE
chr6	42856100	A	G	0.00048	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr2	37330606	T	C	0.00136		.	FALSE	AluSq2	SINE,Alu
chr1	112003958	T	A	0.00557	ATP5F1	+	FALSE	Helitron2Na_Mam	SINE,Alu
chr1	1337737	G	C	2.51903E-05	MRPL20	-	FALSE
chr2	85776644	T	C	0.00127	GGCX	-	TRUE	AluSz6	SINE,Alu
chr15	41597484	A	G	0.00619		.	FALSE	AluSz6	SINE,Alu
chr1	205111761	A	C	0.00497	DSTYK	-	FALSE
chr2	176789423	C	A	0.00441	LNPK	-	FALSE	MSTB1	SINE,Alu

RBP	HNRNPU
Knock-Method	shRNA
RBP Family	SAP
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR308IKH
Platform	HiSeq
Pubmed ID	32252787

HNRNPU - Target Gene Network