Dataset Overview
RBPRAVER1
Knock-MethodshRNA
RBP FamilyRRM_1
Biosample NameHepG2
Tissue TypeLiver
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR576GOW
PlatformHiSeq
Pubmed ID32252787

RAVER1 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of RAVER1
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of RAVER1


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr11419700AG0.00671ATAD3B+TRUEAluYk2SINE,Alu
chr541917694TC0.00784C5orf51+FALSE
chr119542458TC0.00988LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr2239127060AG0.00647GTPBP1+FALSE
chr12133298125AG0.00025PGAM5+TRUEAluJoSINE,Alu
chr177759578AG0.00283AK5+FALSE
chr642857111AG0.00681RPL7L1+FALSEAluSpSINE,Alu
chr631657413TC0.00767.FALSE
chr7924602AG0.00195GET4+TRUEAluJbSINE,Alu
chr165692499CT0.00930AK4+FALSE(T)nSINE,Alu
chr2102508654TG0.00010MAP4K4+FALSE
chr1205687365CT0.00071NUCKS1-FALSE(T)nSINE,Alu
chr119585772GA0.00576MRTO4+FALSEAluSc8SINE,Alu
chr543575020TC8.37337E-06NNT-AS1-TRUEAluSq2SINE,Alu
chr110502831AG0.00193APITD1,APITD1-CORT+FALSE
chr1149913731TC0.00198OTUD7B-TRUEMER96BSINE,Alu
chr5118811533GA0.00781HSD17B4+FALSE
chr120826790TC0.00208MUL1-FALSE
chr111141187CG0.00819EXOSC10-FALSE
chr187328403AT0.00235SEP15-FALSE
chr2206983138TC0.00669.FALSEAluJbSINE,Alu
chr110518734TC0.00143.FALSEAluSx1SINE,Alu
chr3119543179CA0.00992GSK3B-FALSE(CA)nSINE,Alu
chr842883403AG0.00204HOOK3+TRUEAluJbSINE,Alu
chr2206862015GA0.00368INO80D-FALSE
chr127203728AT0.00528.FALSE
chr6150047420TC2.23465E-06NUP43-TRUEAluScSINE,Alu
chrX118673382TC0.00021CXorf56-TRUEAluSzSINE,Alu
chr128859267AC2.52971E-07RCC1+FALSE
chr1144868170CT0.00750NBPF20,PDE4DIP+,-FALSE
chr346007825TC4.58354E-06FYCO1-FALSE
chr1765335393TC4.59862E-05PSMD12-TRUEAluSxSINE,Alu
chr10101992783TC0.00313CWF19L1-TRUEAluJbSINE,Alu
chr136529419AG0.00842.FALSEAluJrSINE,Alu
chr5137354051CT0.00098FAM13B-FALSE
chr1246829873GA0.00342CNST+FALSE
chr12123253789AG0.00037DENR+TRUE(AT)nSINE,Alu
chr194353045GT0.00351GCLM-FALSEAluSgSINE,Alu
chr19160982TC0.00695.FALSEAluJbSINE,Alu
chr1953997266AG0.00173ZNF813+FALSEL1M3SINE,Alu
chr457796757GA0.00011REST+FALSE
chr2232319529TA1.32288E-06NCL-FALSE
chr3156258230TC0.00011SSR3-TRUEAluYk3SINE,Alu
chr119543456TC0.00451LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr317201882CT0.00282TBC1D5-FALSE
chr340577761AG0.00701ZNF621+TRUEAluSzSINE,Alu
chr2218572730AG6.64824E-05PEX26+TRUEAluYf1SINE,Alu
chr721941589TA0.00535CDCA7L-FALSE
chr255516938AT0.00265CCDC88A-FALSE(GA)nSINE,Alu
chr110520751TC0.00495DFFA-TRUEAluSc8SINE,Alu
chr135652608AG0.00026SFPQ-FALSE
chr811701429TC0.00496CTSB-TRUEAluSx1SINE,Alu
chr5118175182TC0.00205DTWD2-TRUEAluJrSINE,Alu
chr341281388TG0.00720CTNNB1+FALSE
chr230381505TC0.00820YPEL5+FALSE
chr146806550CT0.00105NSUN4+FALSE
chr147716042AT0.00574STIL-FALSE
chr1424884880TG0.00491NYNRIN+FALSE
chr16651456AG0.00614KLHL21-FALSE
chr729960211CA0.00034SCRN1-FALSE
chr1075009651TC0.00558DNAJC9-AS1,MRPS16+,-FALSEAluScSINE,Alu
chr11647814TC7.10450E-06CDK11B,CDK11A-FALSE
chr165299548TA0.00852JAK1-FALSE
chr1145324364CG0.00157NBPF20,NBPF10+FALSE
chr544826677GT0.00941.FALSE(T)nSINE,Alu
chr16583066TC0.00180NOL9-TRUEAluSx4SINE,Alu
chr43769307CA0.00173ADRA2C+FALSE
chr232447868AG0.00663SLC30A6+FALSE
chr1929703961AC0.00226UQCRFS1-FALSE
chr1075009921TC5.40286E-05DNAJC9-AS1,MRPS16+,-FALSEAluYSINE,Alu
chr146764013GA0.00224LRRC41-FALSE
chr1049609751AG0.00979MAPK8+FALSE
chr1179044206AG0.00458FAM20B+TRUEAluSxSINE,Alu
chr122854702CT5.42952E-11ZBTB40+FALSE
chr2114352238GA8.42668E-06WASH2P+FALSE
chr136068278TC0.00068PSMB2-TRUEAluScSINE,Alu
chr1761502458TA0.00317TANC2+FALSE
chr177482325TA5.04428E-06.FALSE
chr1939433138GA0.00276FBXO17-FALSEAluJbSINE,Alu
chr1156565045CA0.00995GPATCH4-FALSE
chr1666765441GT4.44089E-16DYNC1LI2-FALSEL2cSINE,Alu
chr126774224AG0.00100DHDDS+TRUEAluSz6SINE,Alu
chr116889563CA0.00037NBPF1-FALSE
chr1075008731TC8.90942E-06DNAJC9-AS1,MRPS16+,-FALSEAluJrSINE,Alu
chr3149679162TA0.00235RNF13+FALSE
chr2162268108GA0.00091PSMD14+FALSE
chr119198576AG0.00542ALDH4A1-FALSE
chr19416574AG0.00144SPSB1+FALSE
chr919376248AT0.00821.FALSE
chr189649462TC2.70922E-05GBP4-TRUEAluJbSINE,Alu
chr5125961426AG0.00434PHAX+TRUEAluSz6SINE,Alu
chr136534736AG0.00016.FALSEAluJoSINE,Alu
chr3197611095AG0.00694.FALSEAluSx1SINE,Alu
chr417626174TA0.00534MED28+FALSE
chr811701297TC0.00288CTSB-TRUEAluSx1SINE,Alu
chr116574382AC0.00704FBXO42-FALSE
chr1591044378CT0.00453IQGAP1+FALSE
chr581571875AT0.00027RPS23-FALSE
chr119543353TC0.00091LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr1212618715TC0.00714BORCS5+FALSE
chr452753346AG0.00782DCUN1D4+TRUEAluScSINE,Alu
chr116932144AC0.00559NBPF1-FALSE
chr1144606996GC0.00107NBPF20+FALSE
chr1913883927AG0.00143MRI1+TRUEAluSzSINE,Alu
chr165692500TC0.00281AK4+FALSE(T)nSINE,Alu
chr165897981GA0.00071LEPR,LEPROT+FALSE
chr35259480TA5.79324E-05EDEM1+FALSE
chr119934930TC0.00026MINOS1,MINOS1-NBL1,RPS14P3+FALSE
chr154692358GA0.00195SSBP3-FALSE
chr581571876AT0.00092RPS23-FALSE
chr237327666TC0.00231.FALSE
chr111783889AG0.00746.FALSEAluSqSINE,Alu
chr120976023TC1.28334E-05PINK1,PINK1-AS+,-FALSEAluSzSINE,Alu
chr168940566AC0.00126DEPDC1-FALSE
chr388205579GT2.47620E-05C3orf38+FALSE
chr136770064TC0.00086THRAP3+FALSE(T)nSINE,Alu
chr123636274GT0.00165HNRNPR-FALSE
chr457326875AG0.00456PAICS+TRUEAluSx1SINE,Alu
chr5125961455AG0.00683PHAX+TRUEAluSz6SINE,Alu
chr417802783TC0.00509DCAF16-TRUEAluSzSINE,Alu
chr16283558AT0.00624ICMT-FALSE
chr194032944CT0.00147BCAR3-FALSE
chr1214529740TC0.00356PTPN14-TRUE
chr12125511942AG0.00015THRIL-FALSEAluSx1SINE,Alu
chr425236017TC0.00291PI4K2B+FALSE
chr116892135GA0.00182NBPF1-FALSE
chr128661657AG0.00910MED18+TRUEAluSgSINE,Alu
chr116944953TG0.00158CROCCP2-FALSE
chr7100031497TG0.00119MEPCE+FALSE
chr3196670095CA1.97381E-07NCBP2-AS2+FALSE
chr5121400545AT0.00740LOX-FALSE
chr1248539888CA0.00088PFKM+FALSE
chr11490771CT0.00600PTDSS2+FALSE
chr116889563CA0.00090NBPF1-FALSE
chr3195964298AG0.00263.FALSE
chr139990456GA0.00749BMP8A,PPIEL+,-FALSEL2bSINE,Alu
chr1541590288GT0.00349OIP5-AS1+FALSE
chr1144598641CT0.00250NBPF20+FALSE
chr146774813CG0.00766UQCRH+FALSE
chr1118502771AG0.00466WDR3,SPAG17+,-FALSE(GT)nSINE,Alu
chr1161160460TA0.00298ADAMTS4-FALSE(CA)nSINE,Alu
chr310192709CT0.00082VHL+FALSEAluSx1SINE,Alu
chr1742225547AC0.00240C17orf53+FALSE
chr1533064791GA0.00203FMN1-FALSE
chr133149443AG0.00327SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr1245006499CG0.00171COX20+FALSE
chr133148623AG4.79591E-07SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr16704652CT0.00000DNAJC11-FALSE
chr120238574CT6.32696E-05OTUD3+FALSE
chr1180144485GA0.00665QSOX1+FALSE
chr794060361CT2.02320E-06COL1A2+FALSE
chr161922059CA0.00132NFIA+FALSE(A)nSINE,Alu
chr178184325AG0.00150USP33-FALSE
chr19163290TC0.00130.FALSEAluSpSINE,Alu
chr116945409TA0.00105CROCCP2-FALSE
chr236704035CA0.00012CRIM1+FALSE
chr116768088GA0.00063NECAP2+FALSE
chr3196670090GA0.00059NCBP2-AS2+FALSE
chr1133694645TC2.61039E-05KIAA1549L+FALSE
chr765844562TC0.00695LINC00174-FALSE
chr237230734CT0.00025HEATR5B-FALSE
chrX123046329AG0.00809XIAP+FALSEAluJbSINE,Alu
chr1145512951AG4.65248E-05NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr237328042TC6.80414E-06.FALSE
chr133086812TC0.00812.FALSEAluYSINE,Alu
chr178029905TA0.00256ZZZ3-FALSE
chr16583066TC0.00088NOL9-TRUEAluSx4SINE,Alu
chr238961523CA0.00790GALM+FALSEAluSc8SINE,Alu
chr4248996AG0.00123ZNF876P+TRUEAluYk3SINE,Alu
chr110517567TC0.00578.FALSEAluSx1SINE,Alu
chr3195962244GT0.00083.FALSE
chr121070971GA0.00944HP1BP3-FALSE
chr827661037AT0.00314ESCO2+FALSEA-richSINE,Alu
chr1145512930AG5.47366E-06NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr42940485TC0.00676NOP14-AS1,NOP14+,-FALSEAluJoSINE,Alu
chr1963721TG0.00602WASH5P-FALSE
chr167874859TC0.00214SERBP1-TRUEAluSxSINE,Alu
chr2105963597CT0.00898C2orf49+FALSE
chr1155403831AG0.00676ASH1L,POU5F1P4+,-FALSE
chr228002599TA0.00566MRPL33+FALSE
chr3152883475AT0.00384RAP2B+FALSE
chr12520435GC0.00041FAM213B+FALSE
chr110520888CT0.00960DFFA-FALSE
chr2198416734AT0.00257HSPE1-MOB4,MOB4+FALSE
chr11683565GA0.00552NADK-FALSE
chr3126752934TC0.00038PLXNA1+FALSE
chr1207942336AG0.00586CD46+TRUEAluSg4SINE,Alu
chr642856105AG0.00972RPL7L1+TRUEAluSzSINE,Alu
chr7156763332AG0.00090NOM1+TRUEAluSxSINE,Alu
chr1742880118TC0.00140GJC1-TRUEAluJbSINE,Alu
chr46675519AC0.00064LOC105374366-FALSE
chr1541590978AG1.05775E-06OIP5-AS1+TRUEAluSx1SINE,Alu
chr226612465GA0.00270EPT1+FALSE
chr8145159713GC0.00137MAF1+FALSE
chr1474526154TC0.00030BBOF1,ALDH6A1+,-FALSEAluSpSINE,Alu
chr143629979GT0.00470EBNA1BP2-FALSE
chr1184761162TC0.00685FAM129A-TRUEAluJoSINE,Alu
chr564097145CG0.00361CWC27+FALSE
chr1749042395TC0.00326SPAG9-TRUEAluJbSINE,Alu
chr985861561CT0.00287FRMD3-FALSE(TC)nSINE,Alu
chr271411975AC0.00463PAIP2B-FALSE
chr2232328545CT0.00581NCL-FALSE
chr537290400TC0.00282.FALSEAluSzSINE,Alu
chr299812447AG0.00525MRPL30+TRUEAluSxSINE,Alu
chr449591495GC0.00893.FALSE
chr1179044181AG0.00790FAM20B+TRUEAluSxSINE,Alu
chr636894337GA0.00607C6orf89+FALSEGA-richSINE,Alu
chr133148736AG0.00849SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr1174551853AC0.00079RNF169+FALSE
chr2196602326TG0.00503SLC39A10+FALSE
chr146164493TC0.00330IPP-TRUEAluJbSINE,Alu
chr146075604AG0.00365NASP+TRUEAluSx4SINE,Alu
chr2204162277AG0.00097CYP20A1+TRUEAluSxSINE,Alu
chr313670508GA0.00017FBLN2+FALSE
chr2144331718AG0.00410.FALSEAluJbSINE,Alu
chr9130268407CG0.00902FAM129B-FALSE(CTCA)nSINE,Alu
chr195362949AT0.00114CNN3-FALSE(A)nSINE,Alu
chr11717473AC0.00925GNB1-FALSE
chr1453109810TC0.00463ERO1A-TRUEMER53SINE,Alu
chrX2825119TC0.00670ARSD-TRUEAluSx1SINE,Alu
chr6160100882TC3.93365E-05SOD2-TRUEAluSzSINE,Alu
chr39517369CT0.00395SETD5+FALSE
chr1145513098AG0.00171NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr312628920GC3.08728E-06RAF1-FALSE
chr4104062223CT0.00750CENPE-FALSE
chr7100031498TC0.00110MEPCE+FALSE
chr579277952AC0.00041MTX3-FALSE(AC)nSINE,Alu
chr375779573AG0.00530ZNF717-FALSE
chr314526649TG0.00260SLC6A6+FALSE
chr119542463TC0.00060LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr1249745431AG0.00033DNAJC22+TRUEAluSx3SINE,Alu
chr1468144079GT0.00974RDH11-FALSE
chr239009427AG1.04745E-05.FALSEAluSx3SINE,Alu
chr76063283CT0.00032AIMP2,EIF2AK1+,-FALSE
chr1179312752CT0.00106SOAT1+FALSE
chr2153506056TC0.00252FMNL2+FALSE
chr1116235186AG0.00054VANGL1+FALSE
chrX3526615GT0.00820PRKX-FALSE
chr2161130868AC0.00297RBMS1-FALSE
chr1773940094TC0.00557ACOX1-TRUEAluJbSINE,Alu
chr2018468511TC0.00129RBBP9-TRUEAluSz6SINE,Alu
chr110520174TC0.00413.FALSEAluSxSINE,Alu
chr1543767774GC0.00057TP53BP1-FALSE
chr133149363AG0.00237SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr110520154TC0.00124.FALSEAluSxSINE,Alu
chr2025428750AG3.17139E-06GINS1+TRUEAluJbSINE,Alu
chr2218571477AG4.57932E-05PEX26+TRUEAluSzSINE,Alu
chr116890071GA0.00246NBPF1-FALSE
chr1154323560AT0.00013ATP8B2+FALSE
chr19160989TC0.00092.FALSEAluJbSINE,Alu
chr193828523TA0.00155.FALSE
chr642857136AG2.38933E-09RPL7L1+TRUEAluSpSINE,Alu
chr164114301TC0.00955PGM1+FALSE
chr140306898TC0.00384TRIT1-FALSE
chr143167907TC0.00072YBX1+FALSE
chr154692674AG0.00864SSBP3-FALSE
chr1213037745CG0.00015FLVCR1+FALSE
chr142644770CT1.21495E-06FOXJ3-FALSE
chr344791062TC0.00014KIAA1143-FALSE
chr4170643772CT0.00926CLCN3+FALSE
chr5110463621GT0.00786WDR36+FALSE(T)nSINE,Alu
chr12133298053AG7.95391E-05PGAM5+TRUEAluJoSINE,Alu
chr17833544TC0.00186VAMP3+FALSE
chr495586725TA0.00743PDLIM5+FALSE
chr7135291501TC0.00627NUP205+FALSE
chr12133298095AG0.00081PGAM5+TRUEAluJoSINE,Alu
chr3197612406AG0.00450.FALSEAluSpSINE,Alu
chr3179506721GC0.00018USP13+FALSE
chr1160967855TC0.00050F11R-TRUEAluSpSINE,Alu
chr136067760TC0.00203PSMB2-TRUEAluSzSINE,Alu
chr271214819AT0.00346TEX261-FALSE
chr4190864378TG0.00247FRG1+FALSEGA-richSINE,Alu
chr1226333558AC0.00052ACBD3-FALSE(CAAAA)nSINE,Alu
chr642047404AG0.00182TAF8+TRUEAluSz6SINE,Alu
chr128573293GA0.00059.FALSE
chr2201842323TC0.00390FAM126B-TRUEAluJbSINE,Alu
chr126143725AT0.00988SEPN1+FALSEAluSxSINE,Alu
chr1911257644TC0.00991SPC24-TRUEAluSpSINE,Alu
chr133149400AG0.00407SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr1145500918TC0.00127NBPF20,NBPF10,LIX1L+FALSE
chr1070742774AT0.00504DDX21+FALSE
chr627327349CG0.00359ZNF204P-FALSE
chr1666923452AG0.00065PDP2+TRUEAluSzSINE,Alu
chr1742876730TC0.00024GJC1-TRUEAluSz6SINE,Alu
chr1173457945GA0.00287PRDX6+FALSE
chr1470838368TC0.00561SYNJ2BP-COX16,SYNJ2BP-TRUEAluSgSINE,Alu
chr541917720TG0.00727C5orf51+FALSE
chr13545183AT0.00347TPRG1L+FALSE
chr413601337GA7.28365E-09BOD1L1-FALSE
chr128826128AG0.00060PHACTR4+TRUEAluJbSINE,Alu
chr119447819TC0.00337UBR4-FALSE
chr124999101GT0.00100SRRM1+FALSE
chr333909024AT0.00134PDCD6IP+FALSE
chr286272758GA0.00489POLR1A-FALSE
chr1761909370GA0.00152PSMC5+FALSE
chr596503523CT0.00072RIOK2-FALSE
chr35260057AT0.00117EDEM1+FALSE
chr1117645998AG0.00434.FALSE
chr2128602967TG0.00026.FALSEAluSpSINE,Alu
chr333909025AT0.00796PDCD6IP+FALSE
chr811700373TC0.00212CTSB-TRUEAluSq2SINE,Alu
chr2238484068TC0.00047RAB17-FALSE
chr270452144TG0.00191TIA1-FALSE
chr675797290TA0.00147COL12A1-FALSE
chr1179042482AG1.77761E-07FAM20B+TRUEAluSx1SINE,Alu
chr12133297934AG9.03426E-06PGAM5+TRUEAluJoSINE,Alu
chr261316542AG0.00033KIAA1841+TRUEAluSx1SINE,Alu
chr45710647AG5.78692E-06EVC2-FALSE
chr310290515GA0.00904TATDN2+FALSE
chr345960561TA9.94810E-07FYCO1-FALSE
chr158999651TG0.00980OMA1-FALSE
chr543175369GT7.56035E-05ZNF131+FALSE
chr2206987634TC0.00281.FALSEAluJbSINE,Alu
chr167518534CT0.00682SLC35D1-FALSE

Differential Expression Gene Analysis