RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr4	57326873	A	G	0.00034	PAICS	+	TRUE	AluSx1	SINE,Alu
chr1	32385070	T	A	0.00593	PTP4A2	-	FALSE
chr22	29904354	G	A	0.00072	THOC5	-	FALSE
chr15	77403107	C	A	3.43068E-05	PEAK1	-	FALSE
chr3	24019987	A	C	0.00563	NR1D2	+	FALSE
chr10	114209888	A	G	0.00386	VTI1A	+	TRUE	AluSx3	SINE,Alu
chr1	11084105	T	A	0.00116	TARDBP	+	FALSE
chr1	43996594	T	C	0.00836	PTPRF	+	FALSE	(CGGCTC)n	SINE,Alu
chr1	27107948	G	A	0.00177	ARID1A	+	FALSE
chr5	41919747	C	T	0.00814	C5orf51	+	FALSE	L2c	SINE,Alu
chr1	204520455	T	C	0.00478	MDM4	+	FALSE	AluJb	SINE,Alu
chr2	128604232	A	T	0.00652	POLR2D	-	FALSE
chr7	100958270	T	C	0.00087	LOC101927746,IFT22	+,-	FALSE
chr9	21331486	T	G	0.00675	KLHL9	-	FALSE
chr1	145500918	T	C	0.00127	NBPF20,NBPF10,LIX1L	+	FALSE
chr16	57505656	T	G	0.00107	POLR2C	+	FALSE	(GGTGGG)n	SINE,Alu
chr1	161160460	T	A	0.00298	ADAMTS4	-	FALSE	(CA)n	SINE,Alu
chr1	46077268	A	G	0.00012	NASP	+	TRUE	AluSc8	SINE,Alu
chr11	769883	T	C	0.00631	PDDC1	-	TRUE	AluY	SINE,Alu
chr19	11256725	T	C	7.46879E-09	SPC24	-	TRUE	AluJr4	SINE,Alu
chr1	93811476	G	C	0.00663		.	FALSE
chr10	51613297	A	G	0.00347	TIMM23B,TIMM23	+,-	FALSE
chr1	17393261	T	C	3.60266E-05	PADI2	-	FALSE
chr1	67874859	T	C	0.00374	SERBP1	-	TRUE	AluSx	SINE,Alu
chr1	19542464	T	C	0.00736	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr3	15113655	T	C	0.00025	RBSN	-	TRUE	AluSz6	SINE,Alu
chr10	75009921	T	C	0.00639	DNAJC9-AS1,MRPS16	+,-	FALSE	AluY	SINE,Alu
chr1	19934758	C	G	1.75422E-05	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr1	87379498	T	G	0.00784	SEP15	-	FALSE
chr1	148003730	T	C	0.00415	NBPF8	-	TRUE	L1MC4	SINE,Alu
chr2	86365817	A	G	0.00046	PTCD3	+	FALSE
chr1	19542631	T	C	0.00741	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr2	176791182	T	C	0.00603	LNPK	-	TRUE	MSTD	SINE,Alu
chr9	115447531	T	C	0.00164	INIP	-	TRUE	AluJb	SINE,Alu
chr1	143398850	G	T	0.00639		.	FALSE
chr4	155457601	T	C	0.00423	PLRG1	-	FALSE
chr1	121115958	T	C	0.00818	SRGAP2-AS1,SRGAP2D,SRGAP2B,SRGAP2C	+,-	FALSE
chr1	24746451	A	G	0.00683	NIPAL3	+	TRUE	AluSc	SINE,Alu
chr1	92946618	A	G	0.00062	GFI1	-	FALSE
chr6	33384326	A	T	0.00678		.	FALSE
chr13	110407598	A	G	0.00222	IRS2	-	FALSE
chr10	60047609	A	G	0.00979	CISD1	+	FALSE	(A)n	SINE,Alu
chr1	54692341	T	C	0.00045	SSBP3	-	FALSE	(T)n	SINE,Alu
chr1	214557685	C	A	0.00205	PTPN14	-	FALSE
chr13	20247038	A	G	0.00391	MPHOSPH8	+	TRUE	AluJb	SINE,Alu
chr6	57034840	T	G	0.00581	ZNF451,LOC101927211	+,-	FALSE
chr1	35649803	A	C	0.00659	SFPQ	-	FALSE
chr1	44088112	G	T	0.00822	PTPRF	+	FALSE	(T)n	SINE,Alu
chr15	90819619	A	G	5.14004E-06		.	FALSE	AluSx	SINE,Alu
chr1	36602202	T	C	0.00122	TRAPPC3	-	FALSE
chr1	231154935	C	T	0.00093	FAM89A	-	FALSE
chr1	27205871	G	T	0.00931		.	FALSE
chr1	26755136	A	G	0.00279	LIN28A	+	FALSE	AluSx1	SINE,Alu
chr1	153533813	A	T	0.00451	S100A2	-	FALSE
chr2	201774279	T	C	9.55391E-05		.	FALSE	AluSz	SINE,Alu
chr2	128605225	G	A	0.00401	POLR2D	-	FALSE
chr1	109855150	A	C	0.00062	SORT1	-	FALSE	A-rich	SINE,Alu
chr3	15112630	C	T	0.00017	RBSN	-	FALSE	AluSq2	SINE,Alu
chr1	21810693	A	G	0.00370	NBPF3	+	FALSE	L1MC4	SINE,Alu
chr1	47746678	G	C	0.00328	STIL	-	FALSE
chr8	92075904	T	C	0.00242	OTUD6B-AS1	-	FALSE	LTR67B	SINE,Alu
chr1	1677253	T	C	0.00145	SLC35E2	-	FALSE
chr7	44839297	A	T	0.00777	PPIA	+	FALSE
chr1	179044181	A	G	0.00083	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	145688664	A	T	0.00087	NBPF20,NBPF10,RNF115	+	FALSE
chr12	64842974	C	A	0.00925		.	FALSE	AluSz	SINE,Alu
chr1	159946750	G	A	0.00105	LINC01133	+	FALSE	(GAAA)n	SINE,Alu
chr1	26755175	G	C	0.00211	LIN28A	+	FALSE	AluSx1	SINE,Alu
chr1	114227223	G	A	0.00699	MAGI3	+	FALSE
chr1	31342374	A	C	0.00446	SDC3	-	FALSE	(A)n	SINE,Alu
chr19	50370106	T	G	0.00359	PNKP	-	FALSE
chr3	10193511	A	G	0.00116	VHL	+	TRUE	AluJr	SINE,Alu
chr2	85773376	T	C	0.00607	GGCX	-	TRUE	AluY	SINE,Alu
chr3	195961254	C	T	0.00119		.	FALSE
chr1	33147722	G	A	1.17176E-11	SYNC,RBBP4	+,-	FALSE
chr2	127826533	A	G	0.00104	BIN1	-	FALSE
chr1	68624878	C	T	0.00465	GNG12-AS1,WLS	+,-	FALSE
chr1	1595006	T	C	0.00156	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr1	21810022	A	T	0.00218	NBPF3	+	FALSE
chr2	37328097	T	C	0.00301		.	FALSE
chr5	138618619	A	G	0.00513	SNHG4,MATR3	+	TRUE	AluSx	SINE,Alu
chr3	20025661	C	T	4.83976E-05	RAB5A,PP2D1	+,-	FALSE
chr2	9629304	A	G	0.00121	ADAM17	-	FALSE
chr2	33046027	G	C	0.00397	TTC27	+	FALSE
chr17	7123232	C	G	0.00250	DLG4,ACADVL	+,-	FALSE
chr1	160967855	T	C	0.00042	F11R	-	TRUE	AluSp	SINE,Alu
chr4	177252238	A	G	9.63526E-05	SPCS3	+	TRUE
chr1	95363041	C	T	0.00105	CNN3	-	FALSE
chr1	85787118	G	C	0.00104	DDAH1	-	FALSE
chr1	67874689	T	C	0.00112	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	93298756	T	C	0.00264	FAM69A,RPL5	+,-	FALSE	MER5C	SINE,Alu
chr3	100083425	G	A	0.00717	TOMM70	-	FALSE	FAM	SINE,Alu
chr8	22995145	T	C	3.53807E-06	TNFRSF10D	-	FALSE
chr1	16889014	C	T	0.00722	NBPF1	-	FALSE
chr2	217366821	A	G	0.00510		.	FALSE	AluSz6	SINE,Alu
chr1	145511988	A	G	0.00965	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	145284883	A	G	0.00062	NBPF20,NOTCH2NL	+	FALSE	L2a	SINE,Alu
chr8	144827206	A	T	0.00196	FAM83H-AS1	+	FALSE	ERVL-B4-int	SINE,Alu
chr3	49315588	T	G	0.00182	USP4	-	FALSE
chr5	79922263	T	G	0.00913	DHFR	-	FALSE	HAL1	SINE,Alu
chr1	55319888	T	G	0.00000	DHCR24	-	FALSE
chr13	46700519	C	A	0.00089	LCP1	-	FALSE
chr1	46269493	G	C	0.00233	MAST2	+	FALSE
chr3	66419942	A	G	0.00284	SLC25A26	+	FALSE
chr1	10517352	T	C	0.00064		.	FALSE	AluJr	SINE,Alu
chr1	36068237	T	C	0.00054	PSMB2	-	TRUE	AluSc	SINE,Alu
chr5	170832637	C	T	0.00071	NPM1	+	FALSE
chr1	165370475	G	C	0.00256	RXRG	-	FALSE
chrX	2824343	T	C	0.00108	ARSD	-	TRUE	AluJb	SINE,Alu
chr19	11257673	T	C	0.00211	SPC24	-	TRUE	AluSp	SINE,Alu
chr3	14986111	T	C	0.00999	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr2	206987731	T	C	0.00731		.	FALSE	AluJb	SINE,Alu
chr2	202083872	A	G	0.00022	CASP10	+	TRUE	AluSz	SINE,Alu
chr1	1345006	A	G	0.00123		.	FALSE	AluSg	SINE,Alu
chr1	21780000	G	T	0.00153	NBPF3	+	FALSE	ERVL-E-int	SINE,Alu
chr1	154321623	G	A	0.00782	ATP8B2	+	FALSE
chr1	16889620	T	C	0.00884	NBPF1	-	FALSE
chr12	74934944	A	G	0.00094	ATXN7L3B	+	FALSE
chr7	129251289	C	T	0.00808		.	FALSE
chr9	111781015	A	C	0.00853	TMEM245	-	FALSE
chr1	120839682	A	G	0.00073	FAM72B	+	FALSE
chr1	145283733	A	G	0.00458	NBPF20,NOTCH2NL	+	FALSE
chr3	183976477	C	T	0.00215	ECE2	+	FALSE
chr1	180063334	G	A	2.71425E-05	CEP350	+	FALSE
chr1	144595935	G	A	0.00636	NBPF20	+	FALSE	AluJb	SINE,Alu
chr1	10520202	T	C	0.00529		.	FALSE	AluSx	SINE,Alu
chr1	26449341	A	G	0.00622	PDIK1L	+	FALSE
chr8	144357992	A	G	0.00780	GLI4	+	FALSE
chr14	90509582	T	C	0.00017	TDP1	+	FALSE
chr5	177023119	T	A	0.00295	TMED9	+	FALSE
chr1	21810575	T	C	0.00827	NBPF3	+	FALSE
chr1	179044181	A	G	0.00660	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	94930345	G	A	0.00223	ABCD3	+	FALSE
chr5	154194459	C	A	0.00832	LARP1	+	FALSE
chr3	57612623	T	C	3.38108E-06	DENND6A,PDE12	+,-	FALSE
chr2	48605828	T	A	0.00650	FOXN2	+	FALSE	(T)n	SINE,Alu
chr5	44818826	G	A	0.00595		.	FALSE
chr10	75008846	T	C	0.00135	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr2	3193040	G	A	0.00650	TSSC1	-	FALSE
chr21	33974092	G	C	0.00865	C21orf59	-	FALSE
chr1	38174665	G	A	0.00339	CDCA8	+	FALSE
chr1	46076543	A	G	0.00989	NASP	+	TRUE	AluSx	SINE,Alu
chr18	19445881	T	A	0.00224	MIB1	+	FALSE
chr3	57743246	G	A	0.00221	SLMAP	+	FALSE
chr19	46052996	T	C	2.38036E-05	OPA3	-	TRUE	AluSz6	SINE,Alu
chr6	42856064	A	G	0.00019	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr15	90820104	A	G	4.84304E-05		.	FALSE	AluY	SINE,Alu
chr17	65334885	T	C	2.77388E-05	PSMD12	-	TRUE	AluSq	SINE,Alu
chr3	183209036	T	C	1.78981E-05	KLHL6	-	TRUE	AluSq	SINE,Alu
chr3	197611048	A	G	0.00064		.	FALSE	AluSx1	SINE,Alu
chr1	19934900	G	A	0.00605	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr1	100550370	T	A	0.00743	SASS6	-	FALSE
chr1	24288530	A	T	0.00915	PNRC2	+	FALSE
chr1	27202959	T	C	0.00653		.	FALSE	AluSq2	SINE,Alu
chr1	46075720	A	G	0.00105	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	113455441	C	A	0.00020	SLC16A1	-	FALSE	(A)n	SINE,Alu
chr1	237064432	C	G	0.00019	MTR	+	FALSE
chr1	3416449	C	A	0.00748	MEGF6	-	FALSE
chr1	78414334	C	A	0.00702	FUBP1	-	FALSE	A-rich	SINE,Alu
chr1	160175191	A	C	0.00509	LOC729867,PEA15	+,-	FALSE	(GGC)n	SINE,Alu
chr3	160213318	T	G	0.00215	KPNA4	-	FALSE
chr19	8005999	T	C	0.00027	TIMM44	-	FALSE
chr14	75202963	A	G	2.20276E-06	FCF1	+	TRUE	AluSx	SINE,Alu
chr2	37429626	A	G	0.00028	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr5	125961204	A	G	0.00196	PHAX	+	TRUE	AluSz	SINE,Alu
chr6	100005419	A	G	2.18273E-06	CCNC	-	FALSE	AluSg	SINE,Alu
chr15	42503334	C	T	0.00448	TMEM87A	-	FALSE	(T)n	SINE,Alu
chr7	1199790	G	C	0.00049	ZFAND2A	-	FALSE
chr1	146650289	C	T	0.00736	PDIA3P1	+	FALSE
chr1	85715978	C	G	0.00815	C1orf52	-	FALSE
chr1	145509570	A	G	0.00028	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr1	89447854	G	T	0.00310	KYAT3,RBMXL1	-	FALSE
chr1	36534934	A	G	0.00464		.	FALSE	AluJo	SINE,Alu
chr1	16945409	T	A	0.00290	CROCCP2	-	FALSE
chr3	39453160	G	A	0.00000	RPSA	+	FALSE
chr1	100490275	A	G	0.00748	SLC35A3	+	TRUE	AluSc5	SINE,Alu
chr3	113351702	A	G	0.00042		.	FALSE	7SLRNA	SINE,Alu
chr2	37328027	T	C	0.00026		.	FALSE
chr1	148251083	T	C	0.00041	NBPF8,NBPF14,NBPF9	-	FALSE	L1MC4	SINE,Alu
chr7	44841799	A	G	0.00693	PPIA	+	TRUE	AluSx	SINE,Alu
chr5	130537747	A	G	1.40133E-05	LYRM7	+	TRUE	AluJb	SINE,Alu
chr2	207943813	G	T	0.00619	KLF7	-	FALSE	(TTTTGT)n	SINE,Alu
chr1	8045343	C	A	0.00162		.	FALSE
chr2	86249906	T	C	0.00352	LOC90784	-	TRUE	AluJr	SINE,Alu
chr3	48787118	T	C	0.00359	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr7	2473761	T	C	0.00126	CHST12	+	FALSE	(CCGC)n	SINE,Alu
chr1	1252654	A	G	0.00125	CPSF3L	-	FALSE	AluSp	SINE,Alu
chrX	2825114	T	C	0.00738	ARSD	-	TRUE	AluSx1	SINE,Alu
chr5	43575020	T	C	8.37337E-06	NNT-AS1	-	TRUE	AluSq2	SINE,Alu
chr12	125513906	C	A	0.00464		.	FALSE	AluSx1	SINE,Alu
chr1	52306075	T	C	8.71211E-05	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr1	10519888	T	C	0.00878		.	FALSE	AluJr	SINE,Alu
chr1	36642420	T	C	0.00162	MAP7D1	+	FALSE
chr1	150783955	T	C	0.00077	ARNT	-	FALSE	(CA)n	SINE,Alu
chr1	100440553	A	G	9.79324E-05	SLC35A3	+	TRUE	AluJb	SINE,Alu
chr1	70718269	A	G	0.00234		.	FALSE
chr1	205687358	T	C	0.00432	NUCKS1	-	FALSE	(T)n	SINE,Alu
chr6	160100882	T	C	3.93365E-05	SOD2	-	TRUE	AluSz	SINE,Alu
chr1	14599	T	A	0.00304	WASH7P	-	FALSE
chr12	69237042	A	G	0.00413	MDM2	+	TRUE
chr19	46053393	T	C	0.00514	OPA3	-	TRUE	AluSx1	SINE,Alu

RBP	PUF60
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR558XNA
Platform	HiSeq
Pubmed ID	32252787

PUF60 - Target Gene Network