Dataset Overview
RBPCEBPZ
Knock-MethodshRNA
RBP FamilyCBF
Biosample NameHepG2
Tissue TypeLiver
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR929PXS
PlatformHiSeq
Pubmed ID32252787

CEBPZ - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of CEBPZ
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of CEBPZ


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr132697071CA0.00134EIF3I+FALSEAluSpSINE,Alu
chr189447856AG0.00465KYAT3,RBMXL1-FALSE
chr1179044110AG0.00885FAM20B+TRUEAluSxSINE,Alu
chr315114395TC0.00333RBSN-TRUEAluYSINE,Alu
chr2160659996GA0.00177LY75-CD302,LY75-FALSE
chr1179044110AG5.39593E-06FAM20B+TRUEAluSxSINE,Alu
chr1256815652CT1.92663E-05TIMELESS-FALSE
chr16282400TC0.00809ICMT-TRUEAluSzSINE,Alu
chr1203821865CT0.00222ZC3H11A+FALSE
chr1200522059AT0.00163KIF14-FALSEAluSgSINE,Alu
chr19163110TC0.00103.FALSEFRAMSINE,Alu
chr116933749AG0.00764NBPF1-FALSEGA-richSINE,Alu
chr1144594373CG0.00354NBPF20+FALSE
chr138423235CA0.00040SF3A3-FALSEAluJoSINE,Alu
chr315483830AG3.44106E-05EAF1+FALSE
chr191990445AG0.00784CDC7+FALSELFSINE_VertSINE,Alu
chr5122359498AC0.00038PPIC-FALSE(AC)nSINE,Alu
chr185785557TA0.00141DDAH1-FALSE
chr16282237TC0.00771ICMT-TRUEAluSzSINE,Alu
chr636894341GA0.00575C6orf89+FALSEGA-richSINE,Alu
chr357612271TC0.00831DENND6A,PDE12+,-FALSEAluSpSINE,Alu
chr1740176809AT0.00860NKIRAS2+FALSEAluSzSINE,Alu
chr11595077TC0.00031CDK11B,SLC35E2B-TRUEAluSgSINE,Alu
chr11595031TC0.00103CDK11B,SLC35E2B-TRUEAluSgSINE,Alu
chr1114940209GT5.13716E-05TRIM33-FALSE(T)nSINE,Alu
chr29770610AG0.00466YWHAQ-FALSE
chr1114940228CT0.00127TRIM33-FALSE(T)nSINE,Alu
chr232235359AC0.00664MEMO1-FALSE
chr19161550GA0.00043.FALSE
chr111347154AT0.00441UBIAD1+FALSE
chr642855057AG0.00034RPL7L1+TRUEAluSpSINE,Alu
chr6126661502GT0.00873CENPW+FALSE
chr720177613TC0.00913MACC1,LOC101927668-TRUEAluSxSINE,Alu
chr9115446725TC0.00917INIP-TRUEAluJrSINE,Alu
chr1583659311CT0.00858FAM103A1,C15orf40+,-FALSE
chr1155403823AG0.00850ASH1L,POU5F1P4+,-FALSE
chr1648387296AG0.00058LONP2,MIR5095+TRUEAluJbSINE,Alu
chr287002706GA0.00178RMND5A+FALSE
chr4144475142TA0.00375SMARCA5+FALSE
chr16682037GA0.00302PHF13+FALSE
chr5177577353CA0.00121NHP2-FALSE
chr1990984GA0.00018AGRN+FALSE
chr116889985TC0.00583NBPF1-FALSE
chr5140240514AG0.00151PCDHA1,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHA10+FALSEAluYSINE,Alu
chr11118915753TC8.93388E-07HYOU1-FALSE
chr145976723TC5.68535E-05MMACHC,PRDX1+,-FALSE
chr1541593268AG0.00084.FALSEAluSz6SINE,Alu
chr1774560728AG0.00510SNHG16+FALSETHE1BSINE,Alu
chr1172411768TC0.00416C1orf105,PIGC+,-FALSE
chr339137794TC0.00240WDR48+FALSE
chr1205320469GA0.00109KLHDC8A-FALSE
chr136282608GT0.00886AGO4+FALSE
chr1741144250GT0.00025RUNDC1+FALSE
chr11111930765TC0.00764DLAT+FALSE
chr1145293498GC0.00154NBPF20,NBPF10+FALSE
chr644222158TA0.00856SLC35B2-FALSE
chr186049362CA0.00140CYR61+FALSE
chr5134061334AG0.00721SEC24A+FALSE
chr128150601AT0.00382STX12+FALSE
chr147184539CT0.00425EFCAB14-FALSE
chr1180082720GA0.00577CEP350+FALSE
chr2114352179GA1.68965E-05WASH2P+FALSE
chr2216148322AG0.00933.FALSEL1ME2zSINE,Alu
chr1629454768AG0.00564SMG1P6,BOLA2-SMG1P6-FALSE
chr7157129834CG1.26796E-05DNAJB6+FALSE
chr116841620TA0.00023.FALSE
chr189522646GC0.00159GBP1-FALSE
chr11650657CG0.00379CDK11B,CDK11A-FALSE
chr5122359500AC0.00358PPIC-FALSE(AC)nSINE,Alu
chr110437995GA0.00427KIF1B+FALSEAluSgSINE,Alu
chr110520450TC0.00070.FALSEAluSx1SINE,Alu
chr3197612267AG0.00341.FALSEAluSpSINE,Alu
chr811701429TC0.00496CTSB-TRUEAluSx1SINE,Alu
chr1051943605CT0.00508.FALSEMLT1JSINE,Alu
chr285773061AG0.00052GGCX-FALSE
chrX71492446AT0.00281.FALSE
chr1100548868TC0.00114MFSD14A+FALSE
chr220097874TC0.00769TTC32-FALSE
chr3195412864GA0.00725SDHAP2+FALSE
chr2170497653TG0.00587.FALSE
chr1205115428CT4.25965E-05DSTYK-FALSE
chr1145512123AG3.10159E-05NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr2035410314TC0.00602SOGA1-TRUEAluSzSINE,Alu
chr1205683408CT0.00082NUCKS1-FALSE
chr1150199123GT0.00625ANP32E-FALSE
chr5174956493TA0.00466SFXN1+FALSE
chr1161488402TA0.00083FCGR2A+FALSE
chr579923843TC0.00363DHFR-TRUEAluSpSINE,Alu
chr346007823GT6.71801E-06FYCO1-FALSE
chr119585771AG0.00029MRTO4+FALSEAluSc8SINE,Alu
chr1419684445AG0.00351DUXAP10+FALSE
chr120224152GA0.00581OTUD3+FALSE
chr2239360542CA0.00989ASB1+FALSE
chr1731258352GA0.00417TMEM98+FALSE
chr324019987AC0.00563NR1D2+FALSE
chr342253664CT0.00065TRAK1+FALSE
chr647594192CT0.00591CD2AP+FALSE
chr1200375005AT0.00202ZNF281-FALSE
chr127202959TC0.00653.FALSEAluSq2SINE,Alu
chr1531231255AG0.00027FAN1,MTMR10+,-FALSE
chr191863170GA0.00204KLF16-FALSE
chr340353791AT0.00419EIF1B+FALSE
chr310192747AG0.00065VHL+TRUEAluSx1SINE,Alu
chr1148556790TA0.00728.FALSE
chr1236208773CT0.00722NID1-FALSE
chr1109513497CT0.00186WDR47-FALSE
chr232582399TG0.00147BIRC6+FALSE(GGC)nSINE,Alu
chr1257923211AC0.00071MBD6+FALSE(C)nSINE,Alu
chr1214524576TC0.00408PTPN14-TRUEAluSgSINE,Alu
chr19161011TC7.97270E-05.FALSEAluJbSINE,Alu
chr1109239335GT0.00011PRPF38B+FALSE
chr211728089CT0.00352GREB1+FALSEAluSzSINE,Alu
chr47761211CT8.70555E-11AFAP1,AFAP1-AS1+,-FALSE
chr1160990875TC9.42851E-06F11R-FALSE
chr1113672616AG0.00450.FALSEAluJbSINE,Alu
chr1114226056CA0.00883MAGI3+FALSE
chr1151966348CT0.00511S100A10-FALSE
chr489181431TC5.21801E-05PPM1K-TRUEAluSx1SINE,Alu
chr1741144248TG0.00132RUNDC1+FALSE
chr171683647TC0.00763SMYD4-TRUEAluJbSINE,Alu
chr13753136AT0.00088CEP104-FALSE
chr67610036CA0.00545SNRNP48+FALSEL1ME1SINE,Alu
chr133086876TC0.00399ZBTB8OS-TRUEAluYSINE,Alu
chr2232319499TA0.00165NCL-FALSE
chr5176728458GT0.00901RAB24-FALSE
chr133149256AG0.00286SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr116890607GA0.00869NBPF1-FALSE
chr8144681777GT0.00383TIGD5+FALSE
chr5102345546AC0.00463PAM+FALSE
chr203848225AG0.00075MAVS+TRUEAluJrSINE,Alu
chr3100428460GC5.60949E-08TFG+FALSE
chr2198368112GA0.00127HSPE1,HSPE1-MOB4+FALSE
chr3178978532TC0.00061KCNMB3-FALSE
chr2191224981GT0.00676INPP1+FALSE
chr1120267061CA0.00181PHGDH+FALSE
chr1143915747GA0.00603.FALSE
chr1173864944GT0.00415.FALSE
chr1169101273TG0.00522ATP1B1+FALSE(T)nSINE,Alu
chr417488286TG0.00027QDPR-FALSE
chr1144833382CT0.00325NBPF20+FALSEL1MEcSINE,Alu
chr3112720120TG0.00573GTPBP8+FALSE
chr122109370GA0.00371USP48-FALSE
chr1163116048GT3.38683E-05RGS5-FALSE
chr2035521049GA0.00711TLDC2,SAMHD1+,-FALSE
chr717384880AG0.00027AHR+TRUEAluScSINE,Alu
chr417803604TC0.00206DCAF16-TRUEAluYSINE,Alu
chr165692498TC0.00356AK4+FALSE(T)nSINE,Alu
chr2189877305TC0.00612COL3A1+FALSE
chr1220232066TC0.00673RNU5F-1,BPNT1+,-FALSEAluSzSINE,Alu
chr237330144TG0.00478.FALSE
chr553841241TA0.00179SNX18+FALSE
chr5139876355GA0.00815ANKHD1,ANKHD1-EIF4EBP3+FALSEGA-richSINE,Alu
chr2219460472TC0.00187CNOT9+FALSE
chr2206983093TC0.00118.FALSEAluJbSINE,Alu
chr456295160TA0.00576CLOCK-FALSE(T)nSINE,Alu
chr537290397TC0.00305.FALSEAluSzSINE,Alu
chr357613144TC0.00959DENND6A,PDE12+,-FALSEAluSzSINE,Alu
chr16282301TC0.00290ICMT-TRUEAluSzSINE,Alu
chr210270775GT0.00953RRM2+FALSEAluSxSINE,Alu
chr1144594107CG0.00706NBPF20+FALSE
chr1145116147TA0.00031NBPF20,SEC22B+FALSE
chr140537924GA0.00476CAP1+FALSE(A)nSINE,Alu
chr9136209404GA0.00361MED22-FALSE(CAGGG)nSINE,Alu
chr345960558CT6.37727E-08FYCO1-FALSE
chrX123046757AG0.00535XIAP+TRUEAluSzSINE,Alu
chr457326159AG0.00019PAICS+TRUEAluJrSINE,Alu
chr146075604AG0.00365NASP+TRUEAluSx4SINE,Alu
chr9116022893CA0.00060SLC31A1+FALSE
chr349453834CT0.00518TCTA+FALSE
chr11273359TG0.00254DVL1-FALSE
chr473922978TC0.00079COX18-TRUEAluSzSINE,Alu
chr19163502TC0.00366.FALSEAluSpSINE,Alu
chr120826781CT0.00110MUL1-FALSE
chr5130729522TG0.00506CDC42SE2+FALSE(T)nSINE,Alu
chr138174583AC0.00644CDCA8+FALSE
chr6109785909TC0.00556MICAL1,ZBTB24-TRUEAluJrSINE,Alu
chr16282236TC0.00388ICMT-TRUEAluSzSINE,Alu
chr114604AG0.00304WASH7P-FALSE
chr194930345GA1.57139E-05ABCD3+FALSE
chr1101442570AT0.00377SLC30A7+FALSE
chr237330611TC0.00835.FALSEAluSq2SINE,Alu
chr2206983138TC0.00669.FALSEAluJbSINE,Alu
chr349315592TC0.00127USP4-FALSE
chr145975670AG8.16323E-05MMACHC+TRUEAluSx4SINE,Alu
chr1150208462AC9.89925E-05ANP32E-FALSE
chr344790781TC0.00060KIAA1143-TRUEAluYSINE,Alu
chr110521130TC0.00860DFFA-TRUEAluYSINE,Alu
chr136533368AG0.00635.FALSEAluSxSINE,Alu
chr144459935TC0.00953CCDC24+FALSEAluJbSINE,Alu
chr153288870AG0.00501ZYG11B+TRUEAluJoSINE,Alu
chr12125511226AG0.00205THRIL-FALSEAluSx1SINE,Alu
chr417803616TC1.55934E-06DCAF16-TRUEAluYSINE,Alu
chr286251114TC0.00150.FALSEAluSxSINE,Alu
chr1566678CT0.00559.FALSE
chr1113001409CT2.24539E-06CTTNBP2NL+FALSEAluJrSINE,Alu
chr2191799592AG0.00010GLS+TRUE
chr1160920966CT0.00980ITLN2-FALSE
chr1179813613TC0.00595TOR1AIP2-FALSE
chr576728039TG0.00092WDR41-FALSE
chr187328396AT0.00148SEP15-FALSE
chr1145513094AG0.00633NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr919063167CT0.00539HAUS6-FALSE
chr3120113403TG2.55249E-11FSTL1-FALSE
chr237327614TC0.00035.FALSE
chr110519947TC0.00184.FALSEAluJrSINE,Alu
chr1179077613TC0.00731ABL2-FALSE
chr1100658578GA0.00030DBT-FALSE
chr3172115465TA0.00170FNDC3B+FALSE
chr146076468AG0.00069NASP+TRUEAluSxSINE,Alu
chr229135468CG0.00217WDR43+FALSE
chr1738798073TG0.00692SMARCE1-FALSE
chr146662492GA9.93078E-05POMGNT1-FALSE
chr1144932199CA0.00584NBPF20,PDE4DIP+,-FALSE
chr1100654773TC0.00810DBT-TRUEAluSzSINE,Alu
chr857872143CT0.00037IMPAD1-FALSE
chr4104062223CT0.00750CENPE-FALSE
chr4128756628AG0.00011.FALSEAluSxSINE,Alu
chr136068052GT1.43241E-12PSMB2-FALSEL1ME4bSINE,Alu
chr176227022AG0.00035ACADM+FALSE
chr1234561498TC2.33971E-05TARBP1-FALSE
chr1464152516TC0.00011SGPP1-FALSE(TA)nSINE,Alu
chr1145509570AG0.00028NBPF20,NBPF10,RBM8A+TRUEAluJrSINE,Alu
chr1477581481CA0.00997CIPC+FALSE
chr2187544230TA0.00930ITGAV+FALSE
chr1205737659CT0.00024RAB29-FALSEAluSq2SINE,Alu
chr398531342AG0.00607DCBLD2-FALSE
chr146075663AG0.00543NASP+TRUEAluSx4SINE,Alu
chr457796758TA6.82460E-05REST+FALSE
chr1745761108GT0.00127.FALSE
chr349714225TC0.00023APEH+FALSE
chr126143698TA0.00832SEPN1+FALSE
chr641900765AG0.00256BYSL+FALSE
chr1114940210TG0.00028TRIM33-FALSE(T)nSINE,Alu
chr119953120GA0.00212MINOS1,MINOS1-NBL1+FALSE
chr232539582AG0.00419.FALSEAluSpSINE,Alu
chrX3526613CT0.00930PRKX-FALSE
chr153291435AG0.00044ZYG11B+TRUEAluJrSINE,Alu
chr145975345AG0.00227MMACHC+TRUEAluSg7SINE,Alu
chr1206566195CT7.54522E-05SRGAP2+FALSE
chr5118174735TC0.00046DTWD2-TRUEAluYSINE,Alu
chr1156163906CT0.00130SLC25A44+FALSE
chr233623905GT0.00262LTBP1+FALSE
chr6158505088AG0.00083SYNJ2+FALSE
chr7299850GT1.36182E-06FAM20C+FALSE
chr315113656TC1.73787E-06RBSN-TRUEAluSz6SINE,Alu
chr116958063CT0.00246.FALSE
chr1495572111AC0.00409DICER1-FALSE
chr132681795CT0.00791DCDC2B,TMEM234+,-FALSE
chr174672926TA0.00159FPGT-TNNI3K,FPGT+FALSEKanga1dSINE,Alu
chr1610625102TC0.00129EMP2-TRUEAluSx3SINE,Alu
chr47762848GA4.98180E-08AFAP1,AFAP1-AS1+,-FALSE
chrX73421601TC0.00219FTX-TRUEL1MB7SINE,Alu
chr2128951766AG0.00050UGGT1+TRUEAluSpSINE,Alu
chr147840938AG0.00089CMPK1+FALSE
chr131426815AG0.00797PUM1-FALSE
chr1118502087CT0.00585WDR3,SPAG17+,-FALSE
chr1247319705TG6.58458E-05ZNF124-FALSE
chr261764895CA0.00862XPO1-FALSE(AC)nSINE,Alu
chr147844500TG0.00169CMPK1+FALSE
chr153289759AG0.00383ZYG11B+TRUEAluSzSINE,Alu
chr124933701AG0.00372NCMAP+TRUEAluJrSINE,Alu
chr919376249GT0.00658.FALSE
chr116933753GA0.00609NBPF1-FALSEGA-richSINE,Alu
chr642856045AG0.00428RPL7L1+TRUEAluSzSINE,Alu
chr127107651AT0.00200ARID1A+FALSE(A)nSINE,Alu
chr127182751CA0.00122.FALSE
chr738764464TC0.00193VPS41-TRUEAluSpSINE,Alu
chr4165998019TC0.00849TMEM192-TRUEAluSxSINE,Alu
chr194343023AG0.00363DNTTIP2-FALSE
chr8124262075GT7.79989E-05ZHX1-C8orf76,ZHX1-FALSE
chr10101992810TC0.00149CWF19L1-TRUEAluJbSINE,Alu
chr1144912233CT0.00066NBPF20,PDE4DIP+,-FALSE
chr1740723650AT0.00250MLX+FALSE
chr1535272171TC0.00183ZNF770-FALSE
chr352084404AT0.00032DUSP7-FALSE(A)nSINE,Alu
chr1145369589TC0.00696NBPF20,NBPF10+FALSEL1MC4SINE,Alu
chr1227848051CA0.00245PPFIBP1+FALSE
chr16308456GA0.00169GPR153-FALSE
chr13545204CG0.00829TPRG1L+FALSE
chr5130537747AG1.40133E-05LYRM7+TRUEAluJbSINE,Alu
chr120976174TC0.00103PINK1,PINK1-AS+,-FALSEAluSzSINE,Alu
chr629910604CA0.00144.FALSE
chr348787633TC0.00287PRKAR2A-TRUEAluSpSINE,Alu
chr1144930596CA0.00578NBPF20,PDE4DIP+,-FALSE
chr1108742632CT0.00933SLC25A24-FALSE
chr375779573AG0.00530ZNF717-FALSE
chr398518158AT1.44910E-06DCBLD2-FALSE
chr364081236TC8.95068E-05PRICKLE2,PRICKLE2-AS1+,-FALSE

Differential Expression Gene Analysis