Dataset Overview
RBPADAR
Knock-MethodshRNA
RBP FamilyA_deamin
Biosample NameHepG2
Tissue TypeLiver
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR104OLN
PlatformHiSeq
Pubmed ID32252787

ADAR - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of ADAR
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of ADAR


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr1230979247GA0.00137C1orf198-FALSE
chr237328008TC0.00733.FALSE
chr617557416GT0.00885CAP2+FALSE
chr2232319615AT8.19218E-06NCL-FALSE
chr348787118TC0.00248PRKAR2A-TRUEAluSx3SINE,Alu
chr1172003767CA0.00297CLPB-FALSE
chr1145291217CT0.00415NBPF20+FALSE
chr127992799TA0.00014IFI6-FALSEFAMSINE,Alu
chr5154194459CA0.00556LARP1+FALSE
chr16640640TG0.00982ZBTB48+FALSE
chr5125961667AG1.34346E-05PHAX+TRUEAluSz6SINE,Alu
chr116958047CT0.00193.FALSE
chr11594835CG0.00195CDK11B,SLC35E2B-FALSE
chr1109475427TC0.00185GPSM2,CLCC1+,-FALSE
chr116893813AG0.00255NBPF1-FALSE
chr146076529AG0.00196NASP+TRUEAluSxSINE,Alu
chr19161550GA0.00043.FALSE
chr111347150CA0.00366UBIAD1+FALSE
chr6114182986TA0.00316MARCKS+FALSE
chr167468124GC0.00201SLC35D1-FALSE
chr5122165472CT0.00147SNX2+FALSE(AC)nSINE,Alu
chr193617546TC0.00026TMED5-FALSE
chr1247319704TA0.00053ZNF124-FALSE
chr110520767TC5.51501E-05DFFA-TRUEAluSc8SINE,Alu
chr1666923393AG0.00228PDP2+TRUEAluSzSINE,Alu
chr7102089261AG0.00028ORAI2+TRUEAluSq2SINE,Alu
chr1942375549AG4.56329E-05.FALSEAluSxSINE,Alu
chr1024873171GT0.00329ARHGAP21-FALSE
chr2198255334AT0.00551.FALSE
chr3142776250AC0.00926U2SURP+FALSE
chr16282401TC0.00665ICMT-TRUEAluSzSINE,Alu
chr348787684TC0.00494PRKAR2A-TRUEAluSpSINE,Alu
chr315113885TC0.00094RBSN-TRUEAluSz6SINE,Alu
chr11477244TC0.00365SSU72-FALSE
chr126188238GA0.00148PAQR7-FALSEAluSpSINE,Alu
chr133148213AG0.00080SYNC,RBBP4+,-FALSEAluSgSINE,Alu
chr146075191CA0.00457NASP+FALSEA-richSINE,Alu
chr116384843GC0.00049FAM131C-FALSE
chr117298138AT0.00465CROCC+FALSE
chr631112484CT0.00538.FALSE
chr919373160AG0.00404DENND4C+FALSEMADE1SINE,Alu
chr35026729CT0.00539BHLHE40+FALSE
chr1100490000AG0.00066SLC35A3+TRUEAluSgSINE,Alu
chr369151152CA0.00750ARL6IP5+FALSE
chr3180694878AT0.00431FXR1+FALSE(T)nSINE,Alu
chr190152146CT1.61967E-05LRRC8C+FALSE
chr375779644CA0.00177ZNF717-FALSE
chr1100676277AG0.00135DBT-FALSE
chr7128829066AG0.00816SMO+FALSE
chr12125114CT1.71441E-12FAAP20-FALSE
chr146828657CT0.00378NSUN4+FALSE
chr2043343908GA9.03009E-05KCNK15-AS1,WISP2+,-FALSE(GC)nSINE,Alu
chr642857111AG0.00021RPL7L1+FALSEAluSpSINE,Alu
chr1179042551AG0.00336FAM20B+TRUEAluSx1SINE,Alu
chr2109301897TC0.00306LIMS1+FALSE
chr456295161TA0.00075CLOCK-FALSE(T)nSINE,Alu
chr237327670TC0.00297.FALSE
chr2128951904AG0.00444UGGT1+TRUEAluSx1SINE,Alu
chr153684924AG0.00347C1orf123-FALSEL1MA5ASINE,Alu
chr7129963777TG0.00874CPA4+FALSE(TG)nSINE,Alu
chr136770605CT0.00971THRAP3+FALSE(T)nSINE,Alu
chr237331750TC1.79348E-08.FALSEAluJbSINE,Alu
chr110520331CT0.00043.FALSEAluSx1SINE,Alu
chr1013234356AT3.19668E-07MCM10+FALSE
chr4155457052TA0.00833PLRG1-FALSEL2d2SINE,Alu
chr12124105948CT0.00778EIF2B1-FALSE
chr29629953CA0.00042ADAM17-FALSE
chr136067677TC0.00017PSMB2-TRUEAluSzSINE,Alu
chr128826023AG0.00342PHACTR4+FALSEAluJbSINE,Alu
chr340353799GT0.00906EIF1B+FALSE
chr199672919TC0.00097.FALSEAluSx3SINE,Alu
chr579923990TC0.00812DHFR-TRUEAluSpSINE,Alu
chr347036756CG0.00091NBEAL2+FALSE
chr2219523584CT0.00299ZNF142-FALSE
chr1590820068AG0.00194.FALSEAluYSINE,Alu
chr153288916AG0.00289ZYG11B+TRUEAluJoSINE,Alu
chr110520099TC0.00659.FALSEAluSxSINE,Alu
chr11417974CT0.00677ATAD3B+FALSE
chr136068276TC0.00225PSMB2-TRUEAluScSINE,Alu
chr2185802243CA0.00172ZNF804A+FALSE
chr110042987AG0.00149NMNAT1+TRUEAluScSINE,Alu
chr439552148TC0.00011UGDH-AS1,SMIM14+,-FALSEAluSxSINE,Alu
chr568788642GC3.71778E-05OCLN+FALSE
chr473923605TC0.00366COX18-TRUEAluSq2SINE,Alu
chr729960804CT6.73191E-06SCRN1-FALSE
chr1956090351CT1.52943E-09ZNF579-FALSE
chr136530674AG0.00603.FALSEAluSgSINE,Alu
chr1201846626CA0.00429IPO9+FALSE(CA)nSINE,Alu
chr1179989742GC9.63603E-05CEP350+FALSE
chr2018468404TC0.00301RBBP9-TRUEAluSz6SINE,Alu
chr11593060TC5.25946E-05CDK11B,SLC35E2B-FALSE
chr473922981TC0.00491COX18-TRUEAluSzSINE,Alu
chr3124686323AT0.00146HEG1-FALSE
chr128825337AG0.00904PHACTR4+TRUEAluSgSINE,Alu
chr190496700AG0.00486ZNF326+FALSE
chr1204521580AG0.00169MDM4+TRUEAluSgSINE,Alu
chr166058513AG0.00091LEPR+FALSE
chr142886523TC0.00649RIMKLA+FALSEMIRcSINE,Alu
chr657034841GT0.00581ZNF451,LOC101927211+,-FALSE
chr453364GA0.00714ZNF718,ZNF595+FALSE
chr1109475543AG0.00495GPSM2,CLCC1+,-FALSEAluJoSINE,Alu
chr310193796AG2.82806E-06VHL+TRUEAluSxSINE,Alu
chr1148241604GT0.00756NBPF8-FALSEU1SINE,Alu
chr121810693AG0.00370NBPF3+FALSEL1MC4SINE,Alu
chr275120158AT0.00222HK2+FALSE
chr14100762714TC0.00573SLC25A29-TRUEAluJoSINE,Alu
chr744918736TC4.05417E-05PURB-TRUEAluSgSINE,Alu
chr161922437GT0.00359NFIA+FALSE
chr11419888AG0.00630ATAD3B+TRUEAluSpSINE,Alu
chr624720539GC0.00225.FALSE
chr2152976703TA0.00217STAM2-FALSE
chr1154128835GT0.00032TPM3-FALSE
chr264859679TC0.00824SERTAD2-FALSE
chr3196293764GC0.00392WDR53-FALSE
chr1193054576TC0.00068TROVE2+FALSE(ATTTT)nSINE,Alu
chr120977599CG0.00489PINK1,PINK1-AS+,-FALSE
chr1998582GC0.00073.FALSE
chr6100005419AG2.18273E-06CCNC-FALSEAluSgSINE,Alu
chr1145512024AG0.00084NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr1264842920AG2.84792E-05.FALSEAluSzSINE,Alu
chr1931935TC0.00796.FALSE
chr1987670TG0.00148AGRN+FALSE
chr110517313TC0.00742.FALSEAluJrSINE,Alu
chr3195411239AC5.03065E-05SDHAP2+FALSE
chr220401859AT0.00930SDC1-FALSE(A)nSINE,Alu
chr9131457039CT0.00148SET+FALSE
chr11419746AG0.00016ATAD3B+TRUEAluYk2SINE,Alu
chr632796463AC0.00680.FALSE(CCCCA)nSINE,Alu
chr339453610CT0.00025RPSA+FALSE
chr2018469048TC0.00213RBBP9-TRUEAluJrSINE,Alu
chr116889575TC0.00467NBPF1-TRUE
chr220401856TG0.00265SDC1-FALSE
chr138423055CA0.00015SF3A3-FALSE
chr1423441380TC0.00102AJUBA-TRUEEutr2SINE,Alu
chr138326643TC0.00458INPP5B-TRUEAluJrSINE,Alu
chr1741133087AG0.00141RUNDC1+FALSE
chr3181430144CT0.00043SOX2-OT,SOX2+FALSE
chr19328094AG0.00107H6PD+TRUEAluJrSINE,Alu
chr138326774TC0.00664INPP5B-TRUEAluJrSINE,Alu
chr1114227223GA0.00699MAGI3+FALSE
chr237431681AG0.00436CEBPZOS,CEBPZ+,-FALSEAluScSINE,Alu
chr3112720122TA0.00679GTPBP8+FALSE
chrX102613351AG0.00969TCEAL9+FALSEL1ME4aSINE,Alu
chr553840199GT0.00857SNX18+FALSE
chr348787640TC0.00463PRKAR2A-TRUEAluSpSINE,Alu
chr12121118CT0.00234FAAP20-FALSE
chr1331033317CT0.00254HMGB1-FALSE
chr1681744038TC6.34278E-05CMIP+FALSE(CCGC)nSINE,Alu
chr187012123AG0.00065LAMA1-FALSE
chr16282298TC2.81673E-05ICMT-TRUEAluSzSINE,Alu
chr147843356AT0.00556CMPK1+FALSE
chr357548976AG0.00132PDE12+TRUEFRAMSINE,Alu
chr1144822330CT6.80810E-06NBPF20,NBPF9+FALSE
chr841399648AG0.00037LOC102723729,GINS4+,-FALSEAluSx3SINE,Alu
chr124134721TC0.00113HMGCL-FALSE
chr1990773CT0.00705AGRN+FALSE
chr1228880021CT4.50271E-05RHOU+FALSE
chr6150046603TC0.00763NUP43-TRUEAluSq2SINE,Alu
chr123636274GT0.00165HNRNPR-FALSE
chr116913677TC0.00638NBPF1-FALSE
chr3119212010AG0.00685POGLUT1+FALSE
chr339138082CT8.26379E-05WDR48+FALSE
chr286979093GA0.00591RMND5A+FALSE
chr363996262CT0.00273PSMD6-AS2,PSMD6+,-FALSE
chr229170756AT0.00573WDR43+FALSE
chr119543456TC0.00760LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr126755175GC0.00211LIN28A+FALSEAluSx1SINE,Alu
chr151822219GA0.00283EPS15-FALSE
chr133148740AG0.00210SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr133149425AG0.00849SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr471682381TC0.00037GRSF1-TRUEAluSz6SINE,Alu
chr1761502459TA0.00161TANC2+FALSE
chr1226333558AC0.00722ACBD3-FALSE(CAAAA)nSINE,Alu
chr119542463TC0.00060LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr1183105705GA0.00074LAMC1+FALSE
chr349763338TC2.41941E-06IP6K1-FALSE
chr116944809GC0.00072CROCCP2-FALSE
chr310193797AG0.00199VHL+TRUEAluSxSINE,Alu
chr119585553AG4.91829E-14MRTO4+TRUEAluSc8SINE,Alu
chr534906662TC4.70471E-07RAD1-TRUEAluJoSINE,Alu
chr1145512059AG0.00053NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr19163334TC0.00889.FALSEAluSpSINE,Alu
chr193297605CG0.00319RPL5+FALSE
chr131905886CA0.00226SERINC2+FALSE
chr2234066969CG0.00590INPP5D+FALSE
chr1963721TG0.00602WASH5P-FALSE
chr136067760TC0.00032PSMB2-TRUEAluSzSINE,Alu
chr339450156AG0.00985RPSA+FALSE
chr128825433AG0.00019PHACTR4+TRUEAluSgSINE,Alu
chr11252723TC7.44553E-05CPSF3L-TRUEAluSpSINE,Alu
chr110517508TC0.00034.FALSEAluSx1SINE,Alu
chr223918891CT1.03047E-06KLHL29+FALSE
chr19162206TC0.00882.FALSEAluSxSINE,Alu
chr116932931CA0.00169NBPF1-FALSEL1MC2SINE,Alu
chr717384437AG0.00192AHR+TRUEAluSxSINE,Alu
chr110520117TC0.00188.FALSEAluSxSINE,Alu
chr1179326847AG0.00577SOAT1+TRUEAluJoSINE,Alu
chr1161753841GA0.00039ATF6+FALSE
chr483406548AT0.00020TMEM150C-FALSE
chr1298943149AG0.00019TMPO+TRUEAluSzSINE,Alu
chr568858545CG0.00034GTF2H2C,GTF2H2C_2+FALSEAluSzSINE,Alu
chr812283473CT0.00582FAM86B2-FALSE
chr642047553AG0.00359TAF8+TRUEAluSz6SINE,Alu
chr2035521048AT0.00727TLDC2,SAMHD1+,-FALSE
chr110517512TC0.00498.FALSEAluSx1SINE,Alu
chr167874689TC1.72813E-06SERBP1-TRUEAluSx3SINE,Alu
chr152520864AT0.00041TXNDC12-FALSE
chr111814631AG5.11326E-05.FALSE
chr127992799TA0.00017IFI6-FALSEFAMSINE,Alu
chr2220416942GC0.00100OBSL1-FALSE
chr1197476807GC0.00287DENND1B-FALSE
chr118808465TA0.00957KLHDC7A+FALSE
chr110520202TC0.00825.FALSEAluSxSINE,Alu
chr1542860107AG0.00194HAUS2+TRUEAluSgSINE,Alu
chr154692334TC0.00021SSBP3-FALSE(T)nSINE,Alu
chr19161245TC0.00071.FALSEAluSxSINE,Alu
chr1175128444CA0.00036KIAA0040-FALSE
chr147716039AG0.00863STIL-FALSE
chr341281388TG0.00720CTNNB1+FALSE
chr237331065TC0.00527.FALSEAluSx1SINE,Alu
chr5118731273AC0.00843.FALSE
chr1185069561AG0.00675RNF2+FALSE
chr14103372464CA0.00577TRAF3+FALSE(AC)nSINE,Alu
chr410076860GA1.69987E-09WDR1-FALSE
chr12123640853CG0.00667.FALSE
chr3136573440AG0.00038NCK1-AS1,SLC35G2+,-FALSE
chr1153700841AG0.00508INTS3+FALSE
chr136067752TC1.27861E-08PSMB2-TRUEAluSzSINE,Alu
chrM9988TC0.00011.FALSE
chr1327407AG0.00752.FALSE
chr1229730452GA0.00236TAF5L-FALSE
chr119670860AG0.00419CAPZB-FALSE
chr16585215CT0.00286NOL9-FALSEFAMSINE,Alu
chr2201735790GC0.00671PPIL3-FALSE
chr1100489835AG0.00043SLC35A3+TRUEAluSgSINE,Alu
chr116112795AG4.56234E-06FBLIM1+FALSE
chr167896025GA5.77574E-06SERBP1-FALSE
chr477997064AG0.00283CCNI-FALSE(A)nSINE,Alu
chr117085028GA0.00803MST1L,LOC102724562-FALSE
chr1120497841TC0.00673NOTCH2-FALSE
chr2233446265TC0.00177EIF4E2+FALSE
chr17737791AC0.00017CAMTA1+FALSE
chr1100549715TA0.00765SASS6-FALSE
chr1089005496TG0.00138NUTM2A-AS1-FALSEMSTB1SINE,Alu
chr176252687TC0.00021RABGGTB+FALSE
chrX77083952TC0.00045MAGT1-TRUEAluSzSINE,Alu
chr111084345CT0.00558TARDBP+FALSE
chr1675479470TC3.73920E-07TMEM170A-TRUEAluJbSINE,Alu
chr146075663AG0.00240NASP+TRUEAluSx4SINE,Alu
chr119953120GA0.00027MINOS1,MINOS1-NBL1+FALSE
chr1100489452AG0.00741SLC35A3+TRUEAluScSINE,Alu
chr744618353TC0.00168TMED4-TRUEAluSq2SINE,Alu
chr185113229AG0.00687SSX2IP-FALSE
chr1204525548AG0.00027MDM4+TRUEAluSzSINE,Alu
chr1470838268TC0.00365SYNJ2BP-COX16,SYNJ2BP-TRUEAluSgSINE,Alu
chr145975358AG0.00089MMACHC+TRUEAluSg7SINE,Alu
chr261416406TG0.00010USP34-FALSEAluSc8SINE,Alu
chr269746296CT0.00620AAK1-FALSE
chr229023121GT0.00077PPP1CB+FALSE
chr155207985GA0.00156MROH7-TTC4,TTC4+FALSE
chr119542410TC0.00270LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr19642828TA0.00148SLC25A33+FALSE
chr1113672640AG0.00629.FALSEAluJbSINE,Alu
chr6150047376TC0.00612NUP43-TRUEAluScSINE,Alu
chr738763068TC0.00361.FALSEAluSx3SINE,Alu
chr237479862CT0.00603PRKD3-FALSE
chr135658260CG0.00477SFPQ-FALSE
chr224225460AG0.00081.FALSEAluSq2SINE,Alu
chr15102516561TC0.00805WASH3P+FALSE
chr348787909TC6.24209E-06PRKAR2A-TRUEAluJrSINE,Alu
chr439550981TC5.85020E-07UGDH-AS1,SMIM14+,-FALSEAluSzSINE,Alu
chr2132275396TC0.00348LOC150776+FALSE
chr1110201699TC0.00513GSTM4+FALSE
chr540832553AT9.00390E-07RPL37-FALSE
chr16585131CT0.00141NOL9-FALSE

Differential Expression Gene Analysis