RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr2	69688754	T	C	0.00319	AAK1	-	TRUE	AluSq2	SINE,Alu
chr1	19934879	T	C	0.00454	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr17	7123232	C	G	0.00250	DLG4,ACADVL	+,-	FALSE
chr1	35658260	C	G	0.00477	SFPQ	-	FALSE
chr1	111682307	G	C	0.00637	DRAM2,CEPT1	+,-	FALSE
chr1	53684924	A	G	0.00913	C1orf123	-	FALSE	L1MA5A	SINE,Alu
chr1	45279903	C	T	0.00052		.	FALSE	(TCTT)n	SINE,Alu
chr10	63852210	C	T	0.00324	ARID5B	+	FALSE
chr1	53288897	A	G	0.00160	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr1	1717439	T	A	0.00663	GNB1	-	FALSE
chr3	45721891	A	G	0.00163	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	45976112	A	G	1.14998E-06	MMACHC	+	TRUE	AluJr	SINE,Alu
chr4	6644459	C	A	0.00109	MRFAP1	+	FALSE
chr1	94032944	C	T	0.00147	BCAR3	-	FALSE
chr1	28865502	G	A	0.00073	RCC1	+	FALSE
chr4	160279820	C	T	0.00354	RAPGEF2	+	FALSE
chr5	43377330	T	C	0.00039	CCL28	-	TRUE	AluSz	SINE,Alu
chr16	23682631	C	T	0.00960	DCTN5	+	FALSE
chr3	44791547	T	C	0.00184	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr3	99516879	A	T	7.79377E-13	MIR548G	-	FALSE
chr1	109535120	G	A	6.51608E-07	WDR47	-	FALSE
chr7	137561083	T	C	0.00194	CREB3L2	-	FALSE	(GT)n	SINE,Alu
chr16	70284570	A	C	0.00028	EXOSC6	-	FALSE	AluSx	SINE,Alu
chr17	42877749	T	C	0.00287	GJC1	-	TRUE	AluSg	SINE,Alu
chr8	124262076	G	T	0.00115	ZHX1-C8orf76,ZHX1	-	FALSE
chr7	96318078	A	T	0.00790		.	FALSE
chr1	94335191	C	T	0.00382	DNTTIP2	-	FALSE
chr1	36032276	A	T	0.00012	NCDN	+	FALSE	(CA)n	SINE,Alu
chr1	9161231	T	C	0.00481		.	FALSE	AluSx	SINE,Alu
chr2	233446568	G	A	0.00900	EIF4E2	+	FALSE
chr1	6585131	C	T	0.00141	NOL9	-	FALSE
chr16	23582262	T	G	0.00101	UBFD1	+	FALSE
chr20	57603730	A	T	0.00101		.	FALSE
chr2	204298783	A	C	0.00179	RAPH1	-	FALSE	(AT)n	SINE,Alu
chr1	109793319	C	T	0.00027	CELSR2	+	FALSE
chr5	175803244	A	G	0.00245		.	FALSE	AluSc8	SINE,Alu
chr1	145513031	A	G	0.00713	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr2	85133793	G	A	0.00577	TMSB10	+	FALSE
chr1	94343023	A	G	0.00363	DNTTIP2	-	FALSE
chr1	19953132	C	A	0.00910	MINOS1,MINOS1-NBL1	+	FALSE
chr1	109240643	A	C	0.00608	PRPF38B	+	FALSE
chr5	70248477	T	A	0.00163	SMN1,SMN2	+	FALSE	L1MC5a	SINE,Alu
chr2	201253956	A	G	0.00071	SPATS2L	+	FALSE
chr1	26755643	A	G	0.00428	LIN28A	+	FALSE	AluSc	SINE,Alu
chr1	52381348	T	G	0.00500	RAB3B	-	FALSE
chr1	17298140	C	G	0.00584	CROCC	+	FALSE
chr1	71532815	G	A	0.00712	ZRANB2-AS1,ZRANB2	+,-	FALSE
chr7	100031497	T	G	0.00119	MEPCE	+	FALSE
chr3	121351277	A	T	0.00388	HCLS1	-	FALSE
chr4	68587786	G	T	0.00658	UBA6-AS1	+	FALSE	MER41B	SINE,Alu
chr1	16952896	G	A	2.20079E-06	CROCCP2	-	FALSE
chr4	155457049	T	A	0.00434	PLRG1	-	FALSE	L2d2	SINE,Alu
chr1	100549600	G	T	0.00181	SASS6	-	FALSE
chr2	37431521	A	G	0.00783	CEBPZOS,CEBPZ	+,-	FALSE	AluSc	SINE,Alu
chr11	4159457	A	G	0.00764	RRM1	+	FALSE
chr11	65404870	C	T	0.00160	PCNX3	+	FALSE
chr1	65897981	G	A	0.00071	LEPR,LEPROT	+	FALSE
chr12	125511226	A	G	0.00205	THRIL	-	FALSE	AluSx1	SINE,Alu
chr1	44415424	A	G	0.00213	IPO13	+	FALSE
chr19	24103987	A	G	1.84513E-07	ZNF726	+	TRUE	AluSg4	SINE,Alu
chr19	17412218	C	T	0.00790	ABHD8	-	FALSE
chr1	53289860	A	G	6.18707E-07	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr2	10050947	T	C	0.00273	TAF1B	+	FALSE
chr1	1653046	T	A	0.00986	CDK11B,CDK11A	-	FALSE
chr3	176739580	T	C	4.09936E-06	TBL1XR1	-	FALSE
chr1	16011005	G	C	0.00616	PLEKHM2	+	FALSE	(GCG)n	SINE,Alu
chr1	33961147	T	G	0.00196	ZSCAN20	+	FALSE
chr19	21131571	A	G	0.00120	ZNF85	+	FALSE
chr10	121437033	T	G	0.00357	BAG3	+	FALSE
chr1	144604425	C	T	0.00269	NBPF20	+	FALSE
chr7	22981942	G	A	0.00041	FAM126A	-	FALSE
chr1	111489899	C	A	0.00041	LRIF1	-	FALSE
chr3	197612406	A	G	0.00450		.	FALSE	AluSp	SINE,Alu
chr1	28825805	G	A	0.00115	PHACTR4	+	FALSE	AluSp	SINE,Alu
chr3	176739159	A	C	0.00304	TBL1XR1	-	FALSE
chr12	133298069	A	G	6.69127E-09	PGAM5	+	TRUE	AluJo	SINE,Alu
chr5	175816760	T	A	0.00016		.	FALSE
chr19	21302035	A	G	5.57890E-05	ZNF714	+	TRUE	AluSg4	SINE,Alu
chr5	174956494	T	A	2.51545E-05	SFXN1	+	FALSE
chr2	230876757	G	C	0.00321	FBXO36	+	FALSE
chr6	114181223	A	G	0.00365	MARCKS	+	FALSE
chr1	36068276	T	C	0.00339	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	145511962	A	G	0.00187	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr3	42610515	G	A	0.00099	SEC22C	-	FALSE
chr1	179042905	A	G	0.00972	FAM20B	+	TRUE
chr1	10517659	T	C	0.00679		.	FALSE	AluSx1	SINE,Alu
chr1	35319550	C	T	0.00781	SMIM12	-	FALSE	AluSg	SINE,Alu
chr1	46828700	A	G	0.00012	NSUN4	+	FALSE
chr14	66209686	T	A	7.37485E-06	FUT8	+	FALSE	(TT)n	SINE,Alu
chr2	160624383	A	T	0.00142	MARCH7	+	FALSE
chr6	37138024	G	C	0.00892	PIM1	+	FALSE	(GCA)n	SINE,Alu
chr1	19543456	T	C	0.00386	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	26161107	A	T	0.00022	AUNIP	-	FALSE	AluSc8	SINE,Alu
chr10	104661031	A	G	0.00265	BORCS7-ASMT,AS3MT	+	TRUE	AluY	SINE,Alu
chr8	143739435	C	T	7.32829E-06	JRK	-	FALSE
chr6	42045563	A	G	4.21139E-05	TAF8	+	TRUE	AluSz	SINE,Alu
chr1	23408939	T	A	1.04314E-06	KDM1A	+	FALSE
chr1	218617066	A	T	0.00036	TGFB2-OT1,TGFB2	+	FALSE
chr1	144932151	G	T	0.00294	NBPF20,PDE4DIP	+,-	FALSE
chr1	94352570	G	T	0.00097	GCLM	-	FALSE	AluSx1	SINE,Alu
chr6	30572804	C	T	2.81740E-06		.	FALSE
chr3	15483830	A	G	3.44106E-05	EAF1	+	FALSE
chr1	16890644	C	T	0.00533	NBPF1	-	FALSE
chr1	59124223	G	A	0.00256	MYSM1	-	FALSE	MIR3	SINE,Alu
chr1	144606996	G	C	0.00107	NBPF20	+	FALSE
chr1	33148211	A	G	9.09328E-07	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr14	23795222	T	G	0.00162	BCL2L2-PABPN1,PABPN1	+	FALSE
chr1	1593023	G	C	2.84325E-05	CDK11B,SLC35E2B	-	FALSE
chr1	16574382	A	C	0.00704	FBXO42	-	FALSE
chr1	183105534	T	C	0.00125	LAMC1	+	FALSE
chr3	88104073	G	C	0.00887	CGGBP1	-	FALSE
chr1	47184539	C	T	0.00425	EFCAB14	-	FALSE
chr1	16889566	T	C	0.00436	NBPF1	-	TRUE
chr2	86249840	T	C	0.00482	LOC90784	-	TRUE	AluJr	SINE,Alu
chr1	62628531	A	G	0.00716	PATJ	+	TRUE	AluSg4	SINE,Alu
chr16	1819020	A	T	0.00258	MAPK8IP3	+	FALSE
chr1	10519936	T	C	0.00072		.	FALSE	AluJr	SINE,Alu
chr11	65179819	T	C	0.00038	FRMD8	+	FALSE
chr5	64016339	C	T	6.96791E-06	SREK1IP1	-	FALSE
chr1	114443574	A	G	0.00162	AP4B1-AS1,AP4B1	+,-	FALSE	AluSp	SINE,Alu
chr1	179326847	A	G	0.00021	SOAT1	+	TRUE	AluJo	SINE,Alu
chr1	1662764	T	C	0.00505	SLC35E2	-	TRUE	AluY	SINE,Alu
chr1	25168124	G	C	0.00669	CLIC4	+	FALSE
chr7	100957851	T	C	0.00028	LOC101927746,IFT22	+,-	FALSE	MADE1	SINE,Alu
chr8	6615608	C	G	0.00017	AGPAT5	+	FALSE
chr3	14528004	T	C	0.00091	SLC6A6	+	FALSE
chr3	99517483	C	T	0.00070	MIR548G	-	FALSE	(TG)n	SINE,Alu
chr1	214524576	T	C	0.00408	PTPN14	-	TRUE	AluSg	SINE,Alu
chr1	10521237	T	C	0.00200	DFFA	-	TRUE	AluY	SINE,Alu
chr1	27202901	T	C	0.00224		.	FALSE	AluSq2	SINE,Alu
chr2	55516911	A	G	0.00719	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr2	46612340	G	T	3.13955E-05	EPAS1	+	FALSE
chr17	45761109	T	G	0.00018		.	FALSE
chr1	16932495	A	C	0.00199	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	3697137	G	T	0.00250	LRRC47	-	FALSE
chr6	42855182	A	G	0.00583	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr1	10517290	T	C	0.00119		.	FALSE	AluJr	SINE,Alu
chr2	158636910	G	A	0.00160	ACVR1	-	FALSE
chr1	95658342	A	T	0.00123	TMEM56-RWDD3,LOC101928118,TMEM56	+,-	FALSE
chrX	77083641	T	C	0.00055	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr1	78414329	G	A	0.00303	FUBP1	-	FALSE	A-rich	SINE,Alu
chr3	101579158	A	G	0.00022	NFKBIZ	+	FALSE	AluJo	SINE,Alu
chr1	32557486	A	G	0.00525	TMEM39B	+	FALSE
chr1	207942535	A	G	0.00102	CD46	+	TRUE	AluSg4	SINE,Alu
chr1	10519982	T	C	0.00572		.	FALSE	AluJr	SINE,Alu
chr2	191556847	G	T	9.96724E-06	NAB1	+	FALSE
chr1	145281656	A	T	0.00839	NBPF20,NOTCH2NL	+	FALSE
chr4	57326875	A	G	0.00797	PAICS	+	TRUE	AluSx1	SINE,Alu
chr10	75534488	C	T	0.00025	FUT11	+	FALSE
chr9	132573290	C	T	0.00881	TOR1B	+	FALSE
chr1	116943511	T	C	0.00236	ATP1A1,ATP1A1-AS1	+,-	FALSE
chr1	19543973	T	C	0.00236	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr9	132575828	A	T	0.00445	TOR1A	-	FALSE
chr19	42375602	A	G	0.00011		.	FALSE	AluSx	SINE,Alu
chr4	3213832	G	A	0.00012	HTT	+	FALSE
chr1	19542456	T	C	0.00193	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	148004548	T	C	0.00110	NBPF8	-	FALSE
chr4	2940371	T	C	0.00150	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr3	112720120	T	G	0.00573	GTPBP8	+	FALSE
chr8	27661036	C	A	0.00339	ESCO2	+	FALSE	A-rich	SINE,Alu
chr7	158536267	T	C	0.00298	ESYT2	-	FALSE
chr6	32148031	A	G	1.10299E-06		.	FALSE
chr2	202029998	T	A	0.00350	CFLAR	+	FALSE	(TTA)n	SINE,Alu
chr3	47554503	T	G	0.00720	ELP6	-	FALSE	AluSx	SINE,Alu
chr1	28859265	C	G	0.00030	RCC1	+	FALSE
chr17	62541203	G	A	0.00660	SMURF2	-	FALSE
chr1	10517998	T	C	0.00821		.	FALSE	AluJr	SINE,Alu
chr1	144521099	A	G	0.00196	NBPF20	+	FALSE
chr6	109786003	T	C	0.00245	MICAL1,ZBTB24	-	TRUE	AluJr	SINE,Alu
chr5	180682612	A	T	0.00235	CTC-338M12.4	+	FALSE
chr1	20978294	T	A	0.00985	PINK1-AS,DDOST	-	FALSE
chr1	201488143	A	G	0.00492		.	FALSE	AluSz	SINE,Alu
chr4	120979770	T	C	0.00437		.	FALSE	AluSg	SINE,Alu
chr1	9161011	T	C	3.85416E-05		.	FALSE	AluJb	SINE,Alu
chr1	26143727	A	T	0.00917	SEPN1	+	FALSE	AluSx	SINE,Alu
chr1	51822219	G	A	0.00283	EPS15	-	FALSE
chr1	16889138	T	C	0.00356	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr7	86816663	A	G	0.00103	DMTF1	+	TRUE	AluJr	SINE,Alu
chr6	116600774	C	G	0.00180	DSE,TSPYL1	+,-	FALSE
chr1	159887904	A	T	8.82173E-05	TAGLN2	-	FALSE
chr4	2940125	T	C	4.75438E-05	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr5	140720886	A	G	0.00980	PCDHGA1,PCDHGA2	+	FALSE
chr3	124688639	C	A	0.00165	HEG1	-	FALSE
chr1	53288870	A	G	0.00122	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr3	17202334	A	C	0.00770	TBC1D5	-	FALSE
chr1	118166096	C	T	0.00861	FAM46C	+	FALSE
chr1	1344757	A	G	0.00024		.	FALSE	AluSx1	SINE,Alu
chr3	62282907	C	T	9.50704E-05	PTPRG-AS1	-	FALSE
chr1	229795330	T	C	0.00334	URB2	+	FALSE
chr1	93827995	C	T	0.00714	DR1	+	FALSE
chr2	98272734	A	G	0.00996	ACTR1B	-	FALSE
chr19	19793875	A	G	0.00198	ZNF101	+	TRUE	AluSc8	SINE,Alu
chr4	57326917	A	G	5.41162E-06	PAICS	+	TRUE	AluSx1	SINE,Alu
chr2	201842391	T	C	0.00081	FAM126B	-	TRUE	AluJb	SINE,Alu
chr1	156256064	C	T	0.00619	SMG5,TMEM79	+,-	FALSE
chr7	299940	G	A	8.49279E-08	FAM20C	+	FALSE
chr2	86252080	T	C	0.00017	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr4	187509420	G	A	0.00121	FAT1	-	FALSE
chr1	67874859	T	C	0.00374	SERBP1	-	TRUE	AluSx	SINE,Alu
chr17	49041897	T	C	4.67707E-06	SPAG9	-	TRUE	AluSx	SINE,Alu
chr16	10625102	T	C	0.00129	EMP2	-	TRUE	AluSx3	SINE,Alu
chr5	179382563	T	C	0.00704	RNF130	-	FALSE
chr3	148748199	C	A	3.38210E-05	HLTF	-	FALSE
chr1	179829401	T	C	0.00118	TOR1AIP2	-	TRUE	AluJr	SINE,Alu
chr2	191556842	T	A	0.00812	NAB1	+	FALSE
chr1	145369709	A	G	0.00258	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr1	86118417	T	G	0.00211	ZNHIT6	-	FALSE
chr7	91502407	C	G	0.00183	MTERF1	-	FALSE
chr2	96915238	T	C	0.00510		.	FALSE	AluJr	SINE,Alu
chr15	52840681	C	T	0.00789	ARPP19	-	FALSE	AluSx1	SINE,Alu
chr2	198416726	T	A	0.00378	HSPE1-MOB4,MOB4	+	FALSE
chr1	10518826	T	C	0.00292		.	FALSE	AluSx1	SINE,Alu
chr5	102345546	A	C	0.00463	PAM	+	FALSE
chr9	132268359	A	G	0.00436	LINC00963	+	TRUE	AluJb	SINE,Alu
chr17	79838088	T	C	6.81311E-05		.	FALSE	AluSx	SINE,Alu
chr3	195963500	C	T	0.00014		.	FALSE
chr12	27574182	G	C	0.00014	ARNTL2,ARNTL2-AS1	+,-	FALSE
chr1	2336210	C	T	0.00206	RER1	+	FALSE
chr4	123816376	A	T	0.00445	FGF2,NUDT6	+,-	FALSE
chr2	202031433	A	G	0.00611	CFLAR	+	FALSE	SVA_A	SINE,Alu
chr1	16889864	C	A	0.00598	NBPF1	-	FALSE
chr2	39050141	A	C	0.00924	DHX57	-	FALSE
chr1	1597403	C	T	0.00015	CDK11B,SLC35E2B	-	FALSE
chr2	85773689	T	C	0.00104	GGCX	-	TRUE	AluSx1	SINE,Alu
chr1	32799434	C	T	0.00227	MARCKSL1	-	FALSE
chr1	40537940	A	C	0.00155	CAP1	+	FALSE	(A)n	SINE,Alu
chr1	36299630	A	G	0.00828	AGO4	+	FALSE
chr6	33377511	T	C	5.31992E-06		.	FALSE	(TG)n	SINE,Alu
chr10	79552092	C	T	0.00159	DLG5	-	FALSE
chr7	2274221	T	C	0.00579	MRM2	-	TRUE	AluJr	SINE,Alu
chr1	45242861	A	G	0.00911	RPS8	+	TRUE	AluSz	SINE,Alu
chr1	27204436	T	C	1.54117E-06		.	FALSE	AluSg7	SINE,Alu
chr1	16889423	G	C	6.70783E-10	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr12	53435627	A	G	0.00133	EIF4B	+	FALSE
chr5	76728039	T	G	0.00092	WDR41	-	FALSE
chr1	144833386	A	G	0.00325	NBPF20	+	FALSE	L1MEc	SINE,Alu
chr1	24796069	A	C	0.00403	NIPAL3	+	FALSE
chr1	155230131	C	T	0.00829	SCAMP3	-	FALSE
chr1	33148365	G	C	0.00062	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr3	52084040	C	T	4.81509E-06	DUSP7	-	FALSE
chr3	14986104	T	C	6.84901E-10	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr3	196659884	G	T	0.00217	SENP5	+	FALSE
chr1	40982042	G	A	0.00330	EXO5	+	FALSE	AluSx	SINE,Alu
chr1	32661615	A	T	0.00225	TXLNA	+	FALSE
chr4	39551008	T	C	0.00017	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr1	10517691	T	C	9.61087E-05		.	FALSE	AluSx1	SINE,Alu
chr1	9161203	T	C	3.69156E-05		.	FALSE	AluSx	SINE,Alu
chr1	46033497	T	C	0.00719	AKR1A1	+	FALSE	AluYk3	SINE,Alu
chr1	19542250	T	C	0.00780	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr2	232196570	A	G	0.00765	ARMC9	+	FALSE
chr15	40955103	A	G	0.00372		.	FALSE	AluJb	SINE,Alu
chr3	196080528	T	C	0.00700	UBXN7	-	TRUE	AluSx	SINE,Alu
chr1	20978024	C	A	0.00175	PINK1-AS	-	FALSE
chr15	41597484	A	G	0.00619		.	FALSE	AluSz6	SINE,Alu
chr2	173462230	G	T	0.00100	PDK1	+	FALSE	MIRc	SINE,Alu
chr16	48387215	A	G	0.00864	LONP2,MIR5095	+	TRUE	AluJb	SINE,Alu
chr10	13320111	G	T	0.00571	PHYH	-	FALSE
chr1	44818549	C	T	0.00108	ERI3	-	FALSE
chr12	7045885	A	C	0.00473	ATN1	+	FALSE	(CAG)n	SINE,Alu
chr2	203742324	T	C	0.00482		.	FALSE	AluJb	SINE,Alu
chr1	52816691	T	C	0.00353	CC2D1B	-	TRUE	AluSx1	SINE,Alu
chr17	4849959	G	T	0.00636	PFN1	-	FALSE
chr1	75171751	T	C	0.00100	CRYZ	-	FALSE
chr1	1717473	A	C	0.00925	GNB1	-	FALSE
chr17	48828384	G	T	0.00283	LUC7L3	+	FALSE
chr3	45721905	A	G	0.00238	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr2	74349080	A	G	0.00094		.	FALSE	AluSz	SINE,Alu
chr6	13788297	T	C	0.00077	MCUR1	-	TRUE	AluSx	SINE,Alu
chr1	10517486	T	C	0.00626		.	FALSE	AluSx1	SINE,Alu
chr1	117645998	A	G	0.00057		.	FALSE
chr1	28661576	A	G	0.00021	MED18	+	TRUE	AluSg	SINE,Alu
chr4	40631476	C	A	5.49937E-05	RBM47	-	FALSE
chr1	19542631	T	C	0.00198	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr15	84873635	C	T	0.00059	LOC440300,GOLGA2P7	+,-	FALSE
chr15	42707317	A	T	8.30558E-05	ZNF106	-	FALSE
chr1	90493918	G	A	0.00166	ZNF326	+	FALSE
chr7	129472333	C	T	0.00670	UBE2H	-	FALSE	(CA)n	SINE,Alu
chr5	112312528	T	C	0.00827	DCP2	+	FALSE
chr1	21766776	G	C	0.00343	NBPF3	+	FALSE
chr12	101295434	A	G	0.00695	ANO4	+	FALSE
chr2	39664278	C	A	0.00053	MAP4K3	-	FALSE	(CGC)n	SINE,Alu
chr1	168169452	G	A	0.00600	TIPRL	+	FALSE
chr1	19586455	A	G	0.00772	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	151862656	T	C	0.00933	THEM4	-	TRUE	AluSp	SINE,Alu
chr1	16910172	G	A	0.00085	NBPF1	-	FALSE
chr1	6582470	T	C	0.00522	NOL9	-	TRUE	AluSx1	SINE,Alu
chr1	19585917	T	A	0.00308	MRTO4	+	FALSE	AluJr	SINE,Alu
chr15	31619607	G	A	0.00887	KLF13	+	FALSE
chr2	206981856	T	C	0.00174		.	FALSE	AluJb	SINE,Alu
chr1	17766126	A	G	0.00017	RCC2	-	FALSE
chr5	35058802	T	C	0.00152	PRLR	-	FALSE
chr1	1595586	T	C	0.00108	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr1	44463185	T	G	0.00397	SLC6A9	-	FALSE
chr2	37431485	A	G	0.00339	CEBPZOS,CEBPZ	+,-	FALSE	AluSc	SINE,Alu
chr2	37327677	T	C	0.00019		.	FALSE
chr1	85331816	A	G	0.00921	LPAR3	-	FALSE
chr4	1388115	C	G	0.00682	CRIPAK	+	FALSE	L1MB4	SINE,Alu
chr14	50792837	A	G	0.00550	ATP5S	+	TRUE	AluSx	SINE,Alu
chr5	149823789	G	T	0.00793		.	FALSE
chr2	220406239	T	G	0.00014	CHPF	-	FALSE	MIRb	SINE,Alu
chr5	37290571	T	C	0.00097		.	FALSE	AluSz	SINE,Alu
chr12	133298121	A	G	0.00026	PGAM5	+	TRUE	AluJo	SINE,Alu
chr1	16944809	G	C	9.47535E-05	CROCCP2	-	FALSE
chr19	39981168	A	G	0.00446	TIMM50	+	TRUE	AluJr	SINE,Alu
chr1	155403831	A	G	0.00676	ASH1L,POU5F1P4	+,-	FALSE
chr1	203766875	T	C	3.09664E-07	ZC3H11A,ZBED6	+	FALSE
chr5	139680027	A	G	0.00155	PFDN1	-	FALSE
chr7	55433880	G	C	0.00115	LANCL2	+	FALSE
chr1	16889563	C	A	0.00037	NBPF1	-	FALSE
chr1	9645101	C	T	0.00726		.	FALSE	(ATATTC)n	SINE,Alu
chr1	154128839	G	T	0.00534	TPM3	-	FALSE
chr1	86852621	A	G	0.00930	ODF2L	-	FALSE
chr6	34254585	G	T	0.00519		.	FALSE	AluSq2	SINE,Alu
chr22	16148871	T	G	0.00071		.	FALSE	Tigger1	SINE,Alu
chr1	10520764	T	C	0.00542	DFFA	-	TRUE	AluSc8	SINE,Alu
chr2	206988075	G	A	0.00672	NDUFS1	-	FALSE
chr3	33907945	A	G	3.34896E-07	PDCD6IP	+	FALSE
chr16	75479377	T	C	0.00639	TMEM170A	-	TRUE	AluJb	SINE,Alu
chr5	79276281	A	G	0.00026	MTX3	-	FALSE
chr2	85776590	T	C	0.00950	GGCX	-	TRUE	AluSz6	SINE,Alu
chr1	117644949	C	G	0.00440	TTF2	+	FALSE
chr3	12942852	C	A	0.00458	IQSEC1	-	FALSE
chr1	31905905	G	C	0.00948	SERINC2	+	FALSE
chr4	4291825	C	T	1.35815E-09	LYAR	-	FALSE
chr1	949608	G	A	0.00435	ISG15	+	FALSE
chr1	144521099	A	G	0.00049	NBPF20	+	FALSE
chr1	16892274	A	T	0.00119	NBPF1	-	FALSE
chr15	85185045	T	C	0.00210	WDR73,SCAND2P	+,-	FALSE	AluSz	SINE,Alu
chr6	74493432	A	C	0.00611	CD109	+	FALSE
chr2	86249930	T	C	6.06022E-05	LOC90784	-	TRUE	AluJr	SINE,Alu
chr2	24225554	A	G	0.00419		.	FALSE	AluSq2	SINE,Alu
chr2	11728089	C	T	0.00352	GREB1	+	FALSE	AluSz	SINE,Alu
chr8	143413136	C	T	0.00267	TSNARE1	-	FALSE
chr2	203743821	T	C	0.00880		.	FALSE	AluSx3	SINE,Alu
chr1	168215575	G	A	0.00688	ANKRD36BP1	-	FALSE
chr7	44842099	A	G	1.82502E-05	PPIA	+	TRUE
chr2	208620129	A	G	0.00167	CCNYL1	+	TRUE	EutTc1-N1	SINE,Alu
chr1	6283305	T	C	0.00496	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	10517659	T	C	0.00010		.	FALSE	AluSx1	SINE,Alu
chr1	92195511	C	T	0.00681	TGFBR3	-	FALSE
chr1	16912138	A	G	0.00197	NBPF1	-	FALSE
chr3	44790772	T	C	0.00024	KIAA1143	-	TRUE	AluY	SINE,Alu
chr10	121588038	A	C	0.00100	INPP5F	+	FALSE
chr4	129796171	A	G	0.00540	JADE1	+	FALSE
chr3	181430143	G	T	0.00126	SOX2-OT,SOX2	+	FALSE
chr1	61921200	A	T	0.00177	NFIA	+	FALSE
chr9	19373161	A	G	0.00647	DENND4C	+	TRUE	MADE1	SINE,Alu
chr1	117945049	G	A	0.00030	MAN1A2	+	FALSE
chr19	12742509	A	G	0.00717		.	FALSE	AluSx	SINE,Alu
chr3	98518158	A	T	0.00960	DCBLD2	-	FALSE
chr2	64863970	C	T	9.52027E-09	SERTAD2	-	FALSE
chr6	33384325	G	T	0.00456		.	FALSE
chr2	32533707	A	G	0.00054		.	FALSE	AluSp	SINE,Alu
chr1	19934838	C	T	2.17786E-05	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr1	16932845	T	G	0.00732	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	9329105	T	A	0.00233	H6PD	+	FALSE
chr1	36388197	C	T	0.00315	AGO1	+	FALSE
chr1	10520180	T	C	0.00267		.	FALSE	AluSx	SINE,Alu
chr2	99812988	A	G	0.00474	MRPL30	+	TRUE	AluJb	SINE,Alu
chr3	194789663	T	C	0.00754	XXYLT1	-	FALSE	MARNA	SINE,Alu
chr1	10517306	T	C	0.00102		.	FALSE	AluJr	SINE,Alu
chr11	34379275	T	C	0.00994	ABTB2	-	FALSE
chr2	9629955	G	T	0.00866	ADAM17	-	FALSE
chr1	23409538	G	A	0.00292	KDM1A	+	FALSE
chr1	244572645	T	G	0.00218	ADSS	-	FALSE
chr4	103718454	T	A	0.00446	LOC102723704,UBE2D3	+,-	FALSE
chr1	38463218	G	A	1.86271E-07	FHL3	-	FALSE
chr3	185826764	C	T	0.00364	ETV5	-	FALSE
chr3	10320968	T	A	0.00237	TATDN2	+	FALSE
chr2	55459824	C	T	0.00786	RPS27A	+	FALSE
chr1	11346336	A	G	0.00288	UBIAD1	+	FALSE
chr1	46830447	A	C	0.00168	NSUN4	+	FALSE	LTR108a_Mam	SINE,Alu
chr14	23795219	C	T	0.00201	BCL2L2-PABPN1,PABPN1	+	FALSE
chr1	234744480	G	A	0.00409	IRF2BP2	-	FALSE
chr1	148010952	C	T	0.00393	NBPF8	-	FALSE
chr2	197001673	T	C	0.00043	STK17B	-	FALSE
chr1	19543459	T	C	0.00540	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr2	62095566	C	T	0.00471	CCT4	-	FALSE
chr7	94060361	C	T	2.02320E-06	COL1A2	+	FALSE
chr3	44869002	G	T	0.00012	KIF15	+	FALSE
chr3	37407769	A	T	0.00406	GOLGA4	+	FALSE
chr2	56150885	G	A	0.00624	EFEMP1	-	FALSE
chr2	206981487	T	C	0.00281		.	FALSE	AluSg	SINE,Alu
chr2	241825926	T	C	7.75373E-05	C2orf54	-	FALSE
chr3	179116220	T	C	0.00233	GNB4	-	TRUE	AluSz6	SINE,Alu
chr5	7885959	A	G	0.00628	MTRR	+	FALSE
chr15	63616881	G	A	0.00026	CA12	-	FALSE
chr19	42376843	A	G	0.00221		.	FALSE	AluSp	SINE,Alu
chr16	88763958	G	A	7.55606E-05	RNF166	-	FALSE
chr10	22825288	G	A	0.00051	PIP4K2A	-	FALSE
chr1	11084103	T	A	0.00162	TARDBP	+	FALSE

RBP	SF3A3
Knock-Method	shRNA
RBP Family	SF3a60_bindingd
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR374NMJ
Platform	HiSeq
Pubmed ID	32252787

SF3A3 - Target Gene Network