Dataset Overview
RBPRBM17
Knock-MethodshRNA
RBP FamilyG-patch
Biosample NameK562
Tissue TypeHaematopoietic_and_lymphoid_tissue
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR898OPN
PlatformHiSeq
Pubmed ID32252787

RBM17 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of RBM17
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of RBM17


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr161922059CA0.00132NFIA+FALSE(A)nSINE,Alu
chr310193358AG0.00765VHL+TRUEL1ME4aSINE,Alu
chr1667715890TC9.92672E-05GFOD2-TRUEAluJrSINE,Alu
chr1145323668GC0.00241NBPF20,NBPF10+FALSE
chr8128752685GA2.94991E-09MYC+FALSE
chr1156233189CT5.51743E-05SMG5-FALSE
chr162380298GA0.00025PATJ+FALSE
chr128825830AG0.00549PHACTR4+TRUEAluSpSINE,Alu
chr10119038371CT0.00058SLC18A2+FALSE(ATTTGGCA)nSINE,Alu
chr11595048TC0.00646CDK11B,SLC35E2B-TRUEAluSgSINE,Alu
chr1173860808AG0.00042.FALSEFLAM_ASINE,Alu
chr1155282600AG0.00019FDPS+TRUEAluSpSINE,Alu
chr1109818161CT0.00382CELSR2+FALSE
chr136068237TC0.00150PSMB2-TRUEAluScSINE,Alu
chr439551976TC0.00041UGDH-AS1,SMIM14+,-FALSEAluSxSINE,Alu
chr1298943162AG5.01524E-05TMPO+TRUEAluSzSINE,Alu
chr2206480819CT0.00663PARD3B+FALSE
chr128662157AG0.00159MED18+TRUEAluSq2SINE,Alu
chr47765043GA0.00071AFAP1,AFAP1-AS1+,-FALSE
chr140537941AC0.00627CAP1+FALSE(A)nSINE,Alu
chr178414310CA0.00131FUBP1-FALSE
chr1669151495TA0.00304HAS3+FALSE(T)nSINE,Alu
chr133148096AG0.00404SYNC,RBBP4+,-FALSEAluSgSINE,Alu
chr132706126GA0.00932MTMR9LP-FALSE
chr398517013TC1.12976E-12DCBLD2-FALSE
chr136186320TC0.00281.FALSEAluSgSINE,Alu
chr19160982TC0.00695.FALSEAluJbSINE,Alu
chr128661657AG0.00910MED18+TRUEAluSgSINE,Alu
chr375779650GC0.00116ZNF717-FALSE
chr136770605CT8.58098E-05THRAP3+FALSE(T)nSINE,Alu
chr111979814GA0.00697KIAA2013-FALSE
chr286249930TC6.06022E-05LOC90784-TRUEAluJrSINE,Alu
chr153290298AG0.00063ZYG11B+TRUEAluSg4SINE,Alu
chr13545183AT0.00347TPRG1L+FALSE
chr1231377081CT0.00895GNPAT+FALSE
chr2242447628TG0.00020STK25-FALSE
chr133149363AG0.00368SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr126131654GA0.00149SEPN1+FALSE
chr345722287AG0.00197LIMD1,LIMD1-AS1+,-FALSEAluSzSINE,Alu
chr477996987TC0.00240CCNI-FALSE
chr799917927TC0.00320SPDYE3+FALSEAluJbSINE,Alu
chr117393260TC0.00094PADI2-FALSE
chr4155457601TC0.00423PLRG1-FALSE
chr716640491GA0.00478ANKMY2-FALSE
chr895804615AG0.00968DPY19L4+TRUEAluSq2SINE,Alu
chr165898251AT0.00143LEPR,LEPROT+FALSEMIRcSINE,Alu
chr75085646CT0.00168RBAK-RBAKDN,RBAK+FALSE
chr457801194AT0.00834REST+FALSE
chr312940374TG0.00505IQSEC1-FALSE
chr1745761110GT0.00816.FALSE
chr1214524129TC0.00052PTPN14-TRUEAluSxSINE,Alu
chr1179989742GC0.00019CEP350+FALSE
chr1549419124TC1.84263E-05COPS2-TRUEMARNASINE,Alu
chr21652354GA0.00114PXDN-FALSE
chr1146495576GC0.00107LOC728989-FALSE
chr1144595886GA0.00242NBPF20+FALSEAluJbSINE,Alu
chr192862862AG0.00024.FALSEAluJrSINE,Alu
chr11595500TC0.00845CDK11B,SLC35E2B-TRUEAluJrSINE,Alu
chr5150647719TC0.00112GM2A+FALSEAluScSINE,Alu
chr495586727GT0.00996PDLIM5+FALSE
chr167874859TC0.00374SERBP1-TRUEAluSxSINE,Alu
chr110042955AG0.00430NMNAT1+TRUEAluScSINE,Alu
chr315456307TC0.00939METTL6-TRUEAluJrSINE,Alu
chr112628188TC3.43513E-08DHRS3-FALSE
chr457326126AG0.00017PAICS+TRUEAluJrSINE,Alu
chr5177576461AT0.00659.FALSE
chr16282371TC0.00054ICMT-TRUEAluSzSINE,Alu
chr1757279258AG0.00095PRR11+TRUEAluSq2SINE,Alu
chr861693942GA0.00350CHD7+FALSE
chr1114938247GA0.00197TRIM33-FALSE
chr43213832GA0.00012HTT+FALSE
chr136282608GT0.00886AGO4+FALSE
chr243625184TA0.00587THADA-FALSE
chr1231468953GA0.00085EXOC8-FALSE
chr1168523337TC0.00016CPT1A-TRUEAluSqSINE,Alu
chr126755643AG0.00728LIN28A+FALSEAluScSINE,Alu
chr150906945CT0.00178FAF1-FALSE
chr132373858AT0.00100PTP4A2-FALSE
chr556177846GC0.00952MAP3K1+FALSE
chr1591044384TG0.00440IQGAP1+FALSE
chr3179117646GA0.00812GNB4-FALSE
chr537290492TC8.25709E-07.FALSEAluSzSINE,Alu
chr126840209GA0.00820COPS7A+FALSE
chr317199207TA0.00075TBC1D5-FALSEA-richSINE,Alu
chr344869002GT0.00012KIF15+FALSE
chr1153599390TC0.00135S100A13-FALSE
chr116945570AG0.00251CROCCP2-FALSE
chr9131812176CT0.00220MIGA2+FALSE
chr195658342AT0.00123TMEM56-RWDD3,LOC101928118,TMEM56+,-FALSE
chr457326875AG0.00797PAICS+TRUEAluSx1SINE,Alu
chr133148635AG0.00168SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr119586458AG0.00333MRTO4+TRUEAluSzSINE,Alu
chr3196662641TC0.00059NCBP2-FALSE
chr1179042555AG0.00922FAM20B+TRUEAluSx1SINE,Alu
chr1183105534TC0.00125LAMC1+FALSE
chr3194362721GA5.25740E-07LSG1-FALSE
chr153291382AG0.00132ZYG11B+TRUEAluJrSINE,Alu
chr138174665GA0.00339CDCA8+FALSE
chr489181451TC8.32748E-05PPM1K-TRUEAluSx1SINE,Alu
chr131905886CA0.00273SERINC2+FALSE
chr3195965115AT0.00098PCYT1A-FALSE
chr765992794TC0.00820.FALSEAluJrSINE,Alu
chr570952934CT0.00315MCCC2+FALSEMIRSINE,Alu
chr1490509587GT0.00203TDP1+FALSE
chr744841238TA0.00108PPIA+FALSE
chr5180001389GA0.00138CNOT6+FALSE
chr128835847AG5.60567E-05SNHG3,RCC1+TRUEAluSx4SINE,Alu
chr1958372763AG0.00479ZNF587+TRUEAluSxSINE,Alu
chr119810693GC0.00042CAPZB-FALSE
chr11650832AG0.00065CDK11B,CDK11A-FALSE
chr417804785TC0.00083DCAF16-TRUEAluSxSINE,Alu
chr237429737AG3.16512E-05CEBPZOS,CEBPZ+,-FALSEAluSzSINE,Alu
chr1022824828AT0.00225PIP4K2A-FALSE
chr117345245CT0.00701SDHB-FALSE
chr2207027628AG2.96026E-05EEF1B2+FALSE
chr237328034TC6.77479E-07.FALSE
chr126608014CA0.00328.FALSE
chr989626839TG0.00016LOC440173-FALSE
chr193298516AG0.00493FAM69A,RPL5+,-FALSE
chr110521237TC0.00200DFFA-TRUEAluYSINE,Alu
chr120519965GT0.00011UBXN10+FALSE
chr1109856391GC0.00569SORT1-FALSE
chr2152314385GA0.00040RIF1+FALSE
chr145975345AG0.00227MMACHC+TRUEAluSg7SINE,Alu
chr2208619675AG0.00012CCNYL1+TRUEAluJbSINE,Alu
chr1145688664AT0.00081NBPF20,NBPF10,RNF115+FALSE
chr729960315CT0.00015SCRN1-FALSE
chr231491075AG0.00061EHD3+FALSE
chr152520867TA7.48778E-05TXNDC12-FALSE
chr139990456GA0.00749BMP8A,PPIEL+,-FALSEL2bSINE,Alu
chr1220232144TC1.06602E-07RNU5F-1,BPNT1+,-FALSEAluSzSINE,Alu
chr674493432AC0.00611CD109+FALSE
chr5176728458GT0.00901RAB24-FALSE
chr3101399945AG0.00965RPL24-FALSE
chr110518591AT0.00030.FALSE
chr15102506389CT0.00153WASH3P+FALSE
chr136534086AG0.00157.FALSEFLAM_ASINE,Alu
chr11573181CA0.00038CDK11B-FALSE
chr194342564CA0.00098DNTTIP2-FALSE
chr1060047608AG0.00356CISD1+FALSE(A)nSINE,Alu
chr315114317TC0.00113RBSN-TRUEAluYSINE,Alu
chr10102315864TA0.00290.FALSE
chr1160966301TC8.33949E-06F11R-TRUEAluSgSINE,Alu
chr291805833AG1.63980E-13.FALSEMLT1H1SINE,Alu
chr1755752444CT0.00000MSI2+FALSE
chr2057603729AT0.00444.FALSE
chr1610623577TC0.00408EMP2-TRUEAluSpSINE,Alu
chr110520331CT0.00065.FALSEAluSx1SINE,Alu
chr3195411498GA0.00722SDHAP2+FALSE
chr12520435GC0.00041FAM213B+FALSE
chr1623536684TC0.00012EARS2-FALSE
chr13545204CG0.00829TPRG1L+FALSE
chr41982726CT0.00828WHSC1+FALSE
chr4159176109CA0.00042TMEM144+FALSEMIRSINE,Alu
chr2231683849AG0.00786CAB39+FALSE
chr1912740463AG0.00120ZNF791+TRUEAluYh3a3SINE,Alu
chr642856954AG0.00037RPL7L1+TRUEAluSpSINE,Alu
chr1179044100AG0.00487FAM20B+TRUEAluSxSINE,Alu
chr131732602CA0.00148SNRNP40-FALSE
chr314986110TC1.11022E-16FGD5-AS1-TRUEFLAM_CSINE,Alu
chr2204055626GT0.00130NBEAL1+FALSE
chr3155660961AG6.62819E-05.FALSEAluSzSINE,Alu
chr136068369TC0.00012PSMB2-TRUEAluScSINE,Alu
chr116133914TC0.00156UQCRHL-TRUE
chr296573123CT0.00413ANKRD36C-FALSE
chr1475202834AG7.36085E-05FCF1+TRUEAluSxSINE,Alu
chr735737649GA0.00566LOC101930085+FALSEAluSzSINE,Alu
chr1847014856TA0.00722RPL17-C18orf32,RPL17-FALSE
chr3172365832TG0.00011NCEH1-FALSE
chr16603884CG0.00118CAPN15+FALSE
chr16651457GA0.00614KLHL21-FALSE
chr447514685CT2.65771E-05ATP10D+FALSE
chr274333235CT0.00022TET3+FALSE
chr6111348022AT2.41155E-06RPF2+FALSE
chr75107572AC0.00563RBAK-RBAKDN,RBAK+FALSEL1ME3ASINE,Alu
chr1423795204GT0.00938BCL2L2-PABPN1,PABPN1+FALSE
chr162628531AG0.00716PATJ+TRUEAluSg4SINE,Alu
chr1779514129GA0.00164FAAP100-FALSE
chr1144930596CA0.00103NBPF20,PDE4DIP+,-FALSE
chr133066859AG0.00403ZBTB8A+TRUEAluSq4SINE,Alu
chr1461112736TG0.00418SIX1-FALSE(T)nSINE,Alu
chr1154128836AT0.00090TPM3-FALSE
chr596350710GA0.00302LNPEP+FALSE
chr1108742632CT0.00933SLC25A24-FALSE
chr2143638992TA0.00089KYNU+FALSE
chr116952481AG0.00093CROCCP2-FALSE
chr315114353TC8.61483E-05RBSN-TRUEAluYSINE,Alu
chr111187199GT0.00047MTOR-FALSE
chr7128142691AG0.00017METTL2B+TRUEAluSx1SINE,Alu
chr578532658CT0.00882JMY+FALSE
chr120945264AC0.00605CDA+FALSE
chr3195678003CG0.00146.FALSEL4_A_MamSINE,Alu
chr8103841636TC2.19081E-06AZIN1-TRUE
chr3179117164TC0.00234GNB4-FALSEAluSzSINE,Alu
chr110521254TC0.00684DFFA-TRUEAluYSINE,Alu
chr136068231TC0.00582PSMB2-TRUEAluScSINE,Alu
chr2239360542CA0.00989ASB1+FALSE
chr16583474TC0.00438NOL9-TRUEAluSqSINE,Alu
chr129098987TA0.00180M6PR-FALSE
chr1145511968AG0.00411NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr9115936771CT1.86133E-10FKBP15-FALSE
chr353268235AC0.00452TKT-FALSE
chr110519936TC0.00607.FALSEAluJrSINE,Alu
chr122400702TC0.00883CDC42+FALSEAluSc8SINE,Alu
chr1292537721AT0.00057BTG1-FALSE
chr1168218522AG0.00153.FALSEAluSzSINE,Alu
chr1150937960GC0.00014CERS2-FALSEG-richSINE,Alu
chr2201735790GC0.00671PPIL3-FALSE
chr322424405TA0.00766.FALSE
chr444176960TC0.00043KCTD8-FALSE
chr145452227GC0.00084EIF2B3-FALSE
chr3197611758AG0.00958.FALSEFLAM_CSINE,Alu
chr7100271438GT0.00460GNB2+FALSE
chr16695423TG9.25675E-05THAP3,DNAJC11+,-FALSE
chr2112874290AT0.00455TMEM87B+FALSE
chrX77083614TC6.82446E-05MAGT1-TRUEAluSz6SINE,Alu
chr1145688973AG0.00017NBPF20,NBPF10,RNF115+TRUEAluSc8SINE,Alu
chr138423184CT4.70100E-06SF3A3-FALSEAluJoSINE,Alu
chr76442892CA0.00675RAC1+FALSE
chr791742141TC0.00100CYP51A1-FALSEAluSx3SINE,Alu
chr153291425AG2.55913E-05ZYG11B+TRUEAluJrSINE,Alu
chr720178434TC0.00178MACC1,LOC101927668-TRUEAluYSINE,Alu
chr7148700782GA0.00209PDIA4-FALSE
chr2203745105TC0.00644.FALSEAluSxSINE,Alu
chr348787715TC0.00863PRKAR2A-TRUEAluSpSINE,Alu
chr16583066TC0.00209NOL9-TRUEAluSx4SINE,Alu
chr2102793246AG0.00904IL1R1+FALSE
chr642857542TA0.00029RPL7L1+FALSEMIRcSINE,Alu
chr297020049TC0.00070NCAPH+FALSE
chr436121334CG0.00057ARAP2-FALSE
chr1241796950CA1.24743E-05OPN3,CHML-FALSE
chr114590GA0.00050WASH7P-FALSE
chr1244182706AG0.00788IRAK4+FALSEMSTB-intSINE,Alu
chr237330612TC0.00136.FALSEAluSq2SINE,Alu
chr1205738302GA0.00661RAB29-FALSE
chr1829410068CT0.00807TRAPPC8-FALSE
chr5149829071TC0.00360RPS14-FALSE
chr136068052GT1.43241E-12PSMB2-FALSEL1ME4bSINE,Alu
chr1229736656GC0.00793TAF5L-FALSE
chr14103372469AC0.00683TRAF3+FALSE(AC)nSINE,Alu
chr116912085TC0.00206NBPF1-FALSE
chr1171751051AG0.00522METTL13+FALSE
chr1298943214AG4.64520E-05TMPO+TRUEAluSzSINE,Alu
chr110520258TC0.00152.FALSEAluSxSINE,Alu
chr6134492481AC0.00340SGK1-FALSE
chr123636031TA0.00965HNRNPR-FALSE
chr1153932212GC0.00340SLC39A1-FALSE
chr119543309TC0.00769LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr110517635TC0.00124.FALSEAluSx1SINE,Alu
chr1145511797TG0.00894NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSE(T)nSINE,Alu
chr123636277AT0.00632HNRNPR-FALSE
chr136067752TC0.00402PSMB2-TRUEAluSzSINE,Alu
chr131905889AG0.00483SERINC2+FALSE
chr111783001AG0.00012.FALSEAluSxSINE,Alu
chr145244413TA0.00748.FALSE
chr126449340GA0.00711PDIK1L+FALSE
chr3179117128TC0.00112GNB4-TRUEAluSzSINE,Alu
chr9137330716AC0.00058RXRA+FALSE
chr1762109CT0.00026LINC00115-FALSE
chr186986227GA3.73397E-05LAMA1-FALSE
chr119543352TC0.00087LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr2162165008AT0.00539PSMD14+FALSE
chr1205687341CT0.00494NUCKS1-FALSE(T)nSINE,Alu
chr19162206TC0.00882.FALSEAluSxSINE,Alu
chr2025428547AG7.92315E-05GINS1+TRUEAluJbSINE,Alu
chr273460315CT0.00315PRADC1-FALSE(CGGCGC)nSINE,Alu
chr7128142395AC0.00300METTL2B+FALSE
chr124796069AC0.00403NIPAL3+FALSE
chr738764332TC0.00209VPS41-TRUEAluSpSINE,Alu
chr8117858600TA0.00015RAD21-FALSE
chr1765335291TC0.00113PSMD12-TRUEAluSxSINE,Alu
chr3193385047CT0.00259OPA1+FALSE
chr143394612TC0.00154SLC2A1-FALSE
chr7143003524GT3.66232E-05CASP2+FALSEAluYSINE,Alu
chr372424929AG0.00988RYBP-FALSE
chr1161338504CG0.00343.FALSE
chr1109465168TA0.00246GPSM2+FALSE
chr1229586611TC0.00794NUP133-TRUEAluSzSINE,Alu
chr1523313171AG0.00257HERC2P2-FALSE
chr175175797GA0.00203CRYZ-FALSE
chr119586455AG3.44081E-06MRTO4+TRUEAluSzSINE,Alu
chr541917695CT0.00019C5orf51+FALSE
chr153290057AG0.00142ZYG11B+TRUEAluSg4SINE,Alu
chr2105964472CT0.00398C2orf49+FALSE(TTTCTCC)nSINE,Alu
chr13114748384CT0.00050RASA3-FALSE
chr352448770AG0.00498PHF7+TRUEAluJbSINE,Alu
chr1153617980AG8.13079E-05CHTOP+FALSE
chr128825331AG0.00051PHACTR4+TRUEAluSgSINE,Alu
chr146075720AG0.00105NASP+TRUEAluSx4SINE,Alu
chr1098281480TA0.00620TM9SF3-FALSE
chr1269237020AG0.00378MDM2+TRUE
chr116889866GA0.00051NBPF1-FALSE
chr633384326AT0.00678.FALSE
chr1205272926CT0.00690NUAK2-FALSE
chr1423795219CT0.00201BCL2L2-PABPN1,PABPN1+FALSE
chr16932082TA0.00330CAMTA1+FALSE
chr11255402CG0.00333CPSF3L-FALSE(GCAGG)nSINE,Alu
chr2128601556TC3.22117E-06.FALSEAluJrSINE,Alu
chr3170113815GT0.00586SKIL+FALSE
chr7100958270TC0.00087LOC101927746,IFT22+,-FALSE
chr2018469048TC0.00213RBBP9-TRUEAluJrSINE,Alu
chr5139931628AC0.00804SRA1-FALSE
chr236704033TA0.00012CRIM1+FALSE
chr136068325TC0.00049PSMB2-TRUEAluScSINE,Alu
chr333430398TA0.00025UBP1-FALSE
chr1959093999AG0.00018CENPBD1P1+TRUEAluYSINE,Alu
chr830535980TC0.00038GSR-TRUEAluJrSINE,Alu
chr3197611125AG0.00948.FALSEAluSx1SINE,Alu
chr1113212974AT0.00424CAPZA1+FALSE
chr16583592TC0.00939NOL9-TRUEAluSqSINE,Alu
chr110043527AG0.00811NMNAT1+TRUEAluSx3SINE,Alu
chr132631809CT2.91083E-08KPNA6+FALSE
chr1209605646AC0.00478MIR205HG+FALSE(AGC)nSINE,Alu
chr11593060TC0.00538CDK11B,SLC35E2B-FALSE
chr1900720AT0.00065KLHL17+FALSE(TTTA)nSINE,Alu
chr1179042687AG0.00782FAM20B+TRUEAluSx1SINE,Alu
chr7102006488AT0.00168LOC100289561,LOC100630923+FALSE
chr1116237273AG0.00309VANGL1+FALSE
chr139500293TA0.00552NDUFS5+FALSE
chr4177252326AG0.00098SPCS3+TRUE
chr315112495TC0.00030RBSN-TRUEAluSq2SINE,Alu
chr1894375GA0.00052NOC2L-FALSE
chr224494671TC0.00244ITSN2-FALSE(TATCCT)nSINE,Alu
chr9137330711TA0.00194RXRA+FALSE(GCTG)nSINE,Alu
chr238522138GT0.00769ATL2-FALSE
chr136068276TC0.00339PSMB2-TRUEAluScSINE,Alu
chr1201845903AG0.00041IPO9+FALSE
chr417803604TC0.00174DCAF16-TRUEAluYSINE,Alu
chr345960561TA9.94810E-07FYCO1-FALSE
chr2151326173AC0.00143RND3-FALSE
chr261764916AC0.00189XPO1-FALSE(AC)nSINE,Alu
chr144071221GA0.00105PTPRF+FALSE
chr131192650TG0.00727MATN1,MATN1-AS1+,-FALSE
chr3100084203CG0.00484TOMM70-FALSE
chr119586501AG0.00019MRTO4+TRUEAluSzSINE,Alu
chr1748828384GT0.00283LUC7L3+FALSE
chr1145688663TG0.00081NBPF20,NBPF10,RNF115+FALSE

Differential Expression Gene Analysis