Dataset Overview
RBP
SMN1
Knock-Method
shRNA
RBP Family
SMN
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR090UMI
Platform
HiSeq
Pubmed ID
32252787
SMN1 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of SMN1
Show
10
25
50
100
entries
Search:
Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1BG
15.89
4.38
-1.81635
1.16841E-26
2.03515E-25
A1CF
30.66
23.45
-0.45034
1.18789E-09
5.96108E-09
A2M
2149.68
1083.63
-1.21395
4.20548E-56
2.43647E-54
A2M-AS1
0.33
0.91
1.22359
0.00015
0.00039
AACS
15.28
12.81
-0.37851
6.48651E-06
2.02876E-05
AADAT
4.81
9.77
0.83753
4.07916E-11
2.38581E-10
AAED1
6.5
4.75
-0.79030
8.38381E-11
4.71948E-10
AAGAB
8.9
20.32
1.10421
4.64351E-33
1.12335E-31
AAK1
2.42
5.54
1.00283
3.48667E-14
2.68033E-13
AAMDC
23.01
15.11
-0.74374
1.27446E-07
4.99243E-07
Showing 1 to 10 of 8,759 entries
Previous
1
2
3
4
5
…
876
Next
Function Analysis of Target Genes of SMN1
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
Show
10
25
50
100
entries
Search:
RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABHD12
25319520_25319640_25303960_25304066_25319862_25319987
0.00755
-0.022
DataSet_01_206
View details
ABI1
27044583_27044670_27040526_27040712_27047990_27048167
0.00091
-0.271
DataSet_01_206
View details
ADD3
111892062_111892158_111890120_111890244_111893083_111893969
0.00868
0.255
DataSet_01_206
View details
AGPAT1
32143590_32143722_32139026_32139282_32144286_32144857
0.00537
0.312
DataSet_01_206
View details
AHSG
186337663_186337729_186336285_186336426_186338374_186339107
0.00190
-0.482
DataSet_01_206
View details
ALB
74272345_74272478_74270017_74270123_74275071_74275140
0.00370
-0.127
DataSet_01_206
View details
ANAPC11
79851427_79851490_79849598_79849717_79852342_79852462
0.00238
-0.143
DataSet_01_206
View details
ANKHD1
139851823_139851880_139844251_139844361_139862164_139862252
0.00373
0.132
DataSet_01_206
View details
AP1G2
24032408_24032484_24031712_24031802_24032588_24032711
0.00114
-0.083
DataSet_01_206
View details
APOL1
36649883_36650037_36649178_36649265_36650982_36651045
0.00004
0.054
DataSet_01_206
View details
Showing 1 to 10 of 186 entries
Previous
1
2
3
4
5
…
19
Next
Show
10
25
50
100
entries
Search:
RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCD4
74764678_74764772_74766250_74766378_74763035_74763152
0.00685
-0.164
DataSet_01_206
View details
ABI1
27044583_27044670_27047990_27048167_27040526_27040712
0.00577
0.168
DataSet_01_206
View details
ACADSB
124797262_124797363_124799981_124800188_124793871_124794031
0.00000
-0.19
DataSet_01_206
View details
AFG3L1P
90044046_90044210_90045217_90045286_90038993_90039173
0.00066
-0.201
DataSet_01_206
View details
AFP
74310709_74310839_74313330_74313393_74309063_74309161
0.00045
-0.26
DataSet_01_206
View details
AFP
74310709_74310839_74313178_74313393_74309063_74309161
0.00210
-0.077
DataSet_01_206
View details
AGT
230841678_230841946_230845740_230846599_230839938_230840083
0.00000
0.445
DataSet_01_206
View details
AHSG
186334933_186335139_186337645_186337729_186334231_186334316
0.00903
0.499
DataSet_01_206
View details
ALB
74275071_74275140_74275140_74275204_74274354_74274522
0.00006
-0.082
DataSet_01_206
View details
ALDH7A1
125918542_125918666_125919623_125919704_125912770_125912903
0.00000
0.16
DataSet_01_206
View details
Showing 1 to 10 of 163 entries
Previous
1
2
3
4
5
…
17
Next
Show
10
25
50
100
entries
Search:
RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACSS2
33509765_33509906_33509765_33509795_33511125_33511234
0.00643
-0.345
DataSet_01_206
View details
ALG11
52586549_52586710_52586549_52586598_52593048_52593279
0.00888
-0.067
DataSet_01_206
View details
AUP1
74755877_74756409_74756258_74756409_74755379_74755616
0.00447
-0.122
DataSet_01_206
View details
EIF3F
8013327_8013518_8013327_8013398_8013630_8013710
0.00777
0.016
DataSet_01_206
View details
EIF4G2
10823207_10823756_10823595_10823756_10822496_10822634
0.00000
0.211
DataSet_01_206
View details
ENPP3
131995301_131995550_131995301_131995421_131996219_131996329
0.00887
-0.096
DataSet_01_206
View details
ENPP3
131995301_131995502_131995301_131995421_131996219_131996329
0.00415
-0.075
DataSet_01_206
View details
HNRNPH1
179043869_179044111_179044021_179044111_179043098_179043219
0.00001
0.064
DataSet_01_206
View details
KMT2C
151842237_151842380_151842249_151842380_151841797_151841966
0.00161
-0.222
DataSet_01_206
View details
LTV1
144178475_144178720_144178475_144178581_144178888_144179144
0.00957
-0.065
DataSet_01_206
View details
Showing 1 to 10 of 22 entries
Previous
1
2
3
Next
Show
10
25
50
100
entries
Search:
RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCC3
48736542_48736729_48736597_48736729_48735795_48735857
0.00904
-0.081
DataSet_01_206
View details
AMBP
116838877_116839038_116838877_116838963_116840372_116840752
0.00869
-0.5
DataSet_01_206
View details
APOA2
161192707_161192840_161192707_161192784_161193139_161193215
0.00349
0.007
DataSet_01_206
View details
APOA2
161192707_161193056_161192707_161192784_161193139_161193215
0.00429
0.018
DataSet_01_206
View details
ATP6V1G2-DDX39B
31508258_31508343_31508258_31508311_31509726_31509925
0.00012
-0.147
DataSet_01_206
View details
ATP6V1G2-DDX39B
31508258_31508354_31508258_31508311_31509726_31509925
0.00029
-0.154
DataSet_01_206
View details
ATP7B
52532446_52532680_52532446_52532536_52534283_52534458
0.00628
0.074
DataSet_01_206
View details
C17orf76-AS1
16342894_16343017_16342973_16343017_16342640_16342728
0.00948
-0.172
DataSet_01_206
View details
C19orf48
51301921_51302215_51301921_51302039_51302550_51302614
0.00468
-0.215
DataSet_01_206
View details
CCNL2
1333612_1333798_1333612_1333722_1333976_1334051
0.00784
-0.018
DataSet_01_206
View details
Showing 1 to 10 of 42 entries
Previous
1
2
3
4
5
Next
Show
10
25
50
100
entries
Search:
RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AAMP
219130301_219130669_219130301_219130405_219130553_219130669
0.00633
-0.034
DataSet_01_206
View details
ABCD4
74763035_74764772_74763035_74763152_74764632_74764772
0.00453
-0.079
DataSet_01_206
View details
ACAA1
38167652_38168191_38167652_38167832_38168000_38168191
0.00021
-0.093
DataSet_01_206
View details
ACAD11
132297639_132298402_132297639_132297725_132298335_132298402
0.00820
0.157
DataSet_01_206
View details
APOA2
161193170_161193418_161193170_161193215_161193384_161193418
0.00000
-0.142
DataSet_01_206
View details
ARAP1
72407593_72408240_72407593_72407699_72408027_72408240
0.00000
-0.045
DataSet_01_206
View details
ARRDC1
140507347_140507962_140507347_140507458_140507911_140507962
0.00520
0.306
DataSet_01_206
View details
ATAT1
30613671_30613886_30613671_30613751_30613843_30613886
0.00251
0.276
DataSet_01_206
View details
ATF4
39916568_39917676_39916568_39916756_39917358_39917676
0.00010
0.056
DataSet_01_206
View details
ATG16L1
234198499_234198999_234198499_234198620_234198893_234198999
0.00585
-0.141
DataSet_01_206
View details
Showing 1 to 10 of 57 entries
Previous
1
2
3
4
5
6
Next
Differential Variants in RNA (DVRs)
Show
10
25
50
100
entries
Search:
Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
28150601
A
T
0.00382
STX12
+
FALSE
chr1
15905501
G
A
0.00359
AGMAT
-
FALSE
chr1
1344749
A
G
3.37361E-05
.
FALSE
AluSx1
SINE,Alu
chr1
1653093
A
G
0.00642
CDK11B,CDK11A
-
FALSE
L2
SINE,Alu
chr1
1309885
A
G
0.00010
AURKAIP1
-
FALSE
chr1
1650657
C
G
0.00379
CDK11B,CDK11A
-
FALSE
chr1
109746745
A
G
0.00073
KIAA1324
+
TRUE
AluJb
SINE,Alu
chr1
9162223
T
C
0.00997
.
FALSE
AluSx
SINE,Alu
chr1
32661600
C
T
0.00235
TXLNA
+
FALSE
(T)n
SINE,Alu
chr1
21810587
A
G
0.00563
NBPF3
+
FALSE
Showing 1 to 10 of 319 entries
Previous
1
2
3
4
5
…
32
Next
Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression