RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	160967833	T	C	0.00717	F11R	-	TRUE	AluSp	SINE,Alu
chr2	9629305	A	T	0.00079	ADAM17	-	FALSE
chr2	37327662	T	C	9.50751E-10		.	FALSE
chr1	10520099	T	C	5.82547E-06		.	FALSE	AluSx	SINE,Alu
chr8	144684474	T	C	0.00058		.	FALSE
chr1	16893721	A	C	0.00179	NBPF1	-	FALSE
chr7	2274221	T	C	0.00579	MRM2	-	TRUE	AluJr	SINE,Alu
chr1	109746601	A	G	0.00024	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr3	39137789	G	A	0.00579	WDR48	+	FALSE
chr18	28571649	A	T	0.00301	DSC3	-	FALSE	MER65C	SINE,Alu
chr1	144521099	A	G	0.00196	NBPF20	+	FALSE
chr1	16889633	T	C	0.00217	NBPF1	-	TRUE
chr1	149943157	G	A	0.00024	OTUD7B	-	FALSE
chr5	40832552	G	T	1.14652E-07	RPL37	-	FALSE
chr3	178740415	G	A	0.00227	ZMAT3	-	FALSE
chr2	176792535	T	G	0.00211	LNPK	-	FALSE
chr2	1636938	C	T	0.00072	PXDN	-	FALSE	(T)n	SINE,Alu
chr2	10923581	C	T	0.00593	ATP6V1C2,PDIA6	+,-	FALSE
chr6	107113953	C	G	0.00300	QRSL1	+	FALSE	AluSg	SINE,Alu
chr6	13788387	T	C	0.00240	MCUR1	-	TRUE	AluSx	SINE,Alu
chr19	9672919	T	C	0.00097		.	FALSE	AluSx3	SINE,Alu
chr2	232319613	C	T	0.00022	NCL	-	FALSE
chr1	109795026	T	C	0.00355	CELSR2	+	FALSE
chr12	124146073	A	G	0.00085	GTF2H3	+	FALSE	AluSx4	SINE,Alu
chr19	7084638	A	G	0.00024	ZNF557	+	TRUE	AluJb	SINE,Alu
chr1	31426815	A	G	0.00797	PUM1	-	FALSE
chr2	99772827	A	G	4.47582E-05	LIPT1	+	TRUE	AluSx1	SINE,Alu
chr3	5258236	G	C	3.37681E-06	EDEM1	+	FALSE
chr1	26144434	G	T	0.00945	SEPN1	+	FALSE
chr3	15838717	A	C	0.00673	ANKRD28	-	FALSE	(A)n	SINE,Alu
chr1	28662253	A	G	0.00117	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	45279813	T	C	0.00614		.	FALSE	(TCTT)n	SINE,Alu
chr5	53841241	T	A	0.00179	SNX18	+	FALSE
chr1	220231330	T	C	0.00427	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr2	86249961	T	C	0.00173	LOC90784	-	TRUE	AluJr	SINE,Alu
chr10	75008965	T	C	0.00017	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr3	160283126	A	C	0.00564	KPNA4	-	FALSE
chr10	117823568	T	A	0.00483	GFRA1	-	FALSE	(ATC)n	SINE,Alu
chr1	87573325	C	T	0.00121	HS2ST1	+	FALSE	(AT)n	SINE,Alu
chr1	38327700	T	C	0.00509	INPP5B	-	TRUE	AluSx3	SINE,Alu
chr1	19543247	T	C	0.00813	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	53290298	A	G	0.00258	ZYG11B	+	TRUE	AluSg4	SINE,Alu
chr2	99812876	A	G	0.00394	MRPL30	+	TRUE	AluJb	SINE,Alu
chr19	42375611	A	G	0.00426		.	FALSE	AluSx	SINE,Alu
chr1	117530273	A	G	0.00601	PTGFRN	+	FALSE
chr1	156878044	G	A	9.48586E-05	PEAR1	+	FALSE
chr1	23240263	G	A	5.22984E-05	EPHB2	+	FALSE
chr1	20945264	A	C	0.00605	CDA	+	FALSE
chr3	178741082	A	C	0.00145	ZMAT3	-	FALSE
chr8	144662353	G	A	0.00951	EEF1D	-	FALSE
chr3	182637840	C	T	1.61172E-05	ATP11B	+	FALSE
chr1	1653046	T	A	0.00686	CDK11B,CDK11A	-	FALSE
chr7	130629624	T	C	0.00568	LINC-PINT	-	TRUE
chr3	183861243	A	G	0.00049	EIF2B5	+	FALSE
chr2	206980072	G	A	1.35396E-05		.	FALSE	MLT1A1	SINE,Alu
chr1	93603177	T	C	0.00364	MTF2	+	FALSE
chr7	75958151	G	C	0.00250	YWHAG	-	FALSE
chr1	155161702	G	C	0.00020	MUC1	-	FALSE
chr1	145442111	C	A	0.00090	NBPF20,NBPF10,TXNIP	+	FALSE
chr3	48787118	T	C	0.00359	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr1	25894471	G	A	0.00778	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr1	6282426	T	C	0.00513	ICMT	-	TRUE	AluSz	SINE,Alu
chr14	21929014	T	C	0.00749	RAB2B	-	TRUE	AluSp	SINE,Alu
chr1	148556726	G	T	0.00976		.	FALSE
chr3	48787640	T	C	0.00038	PRKAR2A	-	TRUE	AluSp	SINE,Alu
chr14	78390880	T	C	0.00050	ADCK1	+	FALSE
chr1	6583592	T	C	0.00939	NOL9	-	TRUE	AluSq	SINE,Alu
chr5	175811093	A	G	0.00730	NOP16	-	FALSE
chr1	161931628	G	C	0.00476	ATF6	+	FALSE
chr2	72403387	C	A	0.00486	EXOC6B	-	FALSE
chr4	152020782	C	T	0.00989	RPS3A	+	FALSE
chr1	244571947	C	T	0.00775	ADSS	-	FALSE
chr2	24223265	A	G	0.00417	UBXN2A	+	TRUE	AluSc	SINE,Alu
chr5	6668842	C	T	4.46208E-05	SRD5A1	+	FALSE
chr4	103809324	A	C	0.00658	CISD2,SLC9B1	+,-	FALSE
chr6	34252328	T	A	0.00062		.	FALSE	(T)n	SINE,Alu
chr6	29910557	T	A	0.00196		.	FALSE
chr3	44791398	T	C	0.00204	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr1	46075187	A	C	0.00024	NASP	+	FALSE	A-rich	SINE,Alu
chr1	36067817	T	C	1.59583E-06	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	87213188	C	A	0.00236	SH3GLB1	+	FALSE
chr6	33384326	A	T	0.00678		.	FALSE
chr1	36067760	T	C	0.00021	PSMB2	-	TRUE	AluSz	SINE,Alu
chr4	165998226	T	C	0.00754	TMEM192	-	TRUE	AluSx	SINE,Alu
chr7	20177519	T	C	0.00885	MACC1,LOC101927668	-	TRUE	AluSx	SINE,Alu
chr2	74375276	A	C	0.00328	BOLA3-AS1	+	FALSE
chr3	10302056	A	G	0.00018	TATDN2	+	FALSE
chr3	40503561	A	T	0.00012	RPL14	+	FALSE
chr2	46612340	G	T	3.13955E-05	EPAS1	+	FALSE
chr1	33149376	A	G	0.00357	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	26755291	A	G	0.00044	LIN28A	+	TRUE	AluSx1	SINE,Alu
chr2	3609064	G	A	0.00212	RNASEH1-AS1	+	FALSE	MER33	SINE,Alu
chr1	33148721	A	G	0.00359	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	59123655	C	T	0.00655	MYSM1	-	FALSE
chr1	16061035	G	C	0.00089	PLEKHM2	+	FALSE
chr5	6748659	T	C	0.00032	PAPD7	+	FALSE
chr17	49042395	T	C	0.00326	SPAG9	-	TRUE	AluJb	SINE,Alu
chr4	9909923	G	A	0.00416	SLC2A9	-	FALSE
chr1	120612194	C	G	1.19417E-05	NOTCH2	-	FALSE	(CCG)n	SINE,Alu
chr1	117644949	C	G	0.00862	TTF2	+	FALSE
chr16	74698531	T	C	0.00702	RFWD3	-	TRUE	AluSx3	SINE,Alu
chr2	3592638	T	C	0.00941	RNASEH1	-	TRUE	AluSz6	SINE,Alu
chr1	9910358	T	C	0.00083	CTNNBIP1	-	FALSE
chr4	153898334	A	G	0.00662	FHDC1	+	FALSE	AluJo	SINE,Alu
chr1	94351064	A	T	0.00620	GCLM	-	FALSE
chr17	43002237	C	A	0.00141	KIF18B	-	FALSE
chr2	72405098	C	A	0.00646	EXOC6B	-	FALSE
chr2	55776561	T	A	0.00092	PPP4R3B	-	FALSE
chr2	206862015	G	A	0.00026	INO80D	-	FALSE
chr1	179044206	A	G	0.00015	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	246831356	G	A	0.00616	CNST	+	FALSE
chr2	91805816	G	A	2.75786E-10		.	FALSE
chr1	85785548	C	T	0.00353	DDAH1	-	FALSE
chr7	138730361	T	C	0.00316	ZC3HAV1	-	FALSE	L2-1_AMi	SINE,Alu
chr5	21883662	T	G	0.00108	CDH12	-	FALSE
chr1	28662105	A	G	9.98367E-05	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	36067925	T	C	1.81623E-06	PSMB2	-	TRUE	AluSz	SINE,Alu
chr5	81571878	A	T	8.61300E-05	RPS23	-	FALSE
chr1	156675377	G	C	0.00935	CRABP2	-	FALSE
chr1	67874696	T	C	0.00245	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr9	19063167	C	T	0.00539	HAUS6	-	FALSE
chr1	19542631	T	C	0.00741	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr12	125511404	A	G	0.00201	THRIL	-	FALSE	AluSx1	SINE,Alu
chr1	113455441	C	A	0.00020	SLC16A1	-	FALSE	(A)n	SINE,Alu
chr9	119162301	A	T	0.00778	PAPPA,PAPPA-AS1	+,-	FALSE	(GAAA)n	SINE,Alu
chr10	51026705	C	G	0.00456	PARG	-	FALSE
chr4	186081538	T	A	0.00077	CFAP97	-	FALSE
chr1	28836048	G	A	0.00035	SNHG3,RCC1	+	FALSE	AluSx4	SINE,Alu
chr3	49714225	T	C	0.00023	APEH	+	FALSE
chrX	77083614	T	C	6.82446E-05	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr1	1573181	C	A	0.00038	CDK11B	-	FALSE
chr3	40353799	G	T	0.00906	EIF1B	+	FALSE
chr3	40577755	A	G	0.00044	ZNF621	+	TRUE	AluSz	SINE,Alu
chr1	207247478	C	T	0.00995	PFKFB2	+	FALSE	MER5B	SINE,Alu
chr10	61548857	C	A	0.00046	CCDC6	-	FALSE
chr2	74442550	A	T	0.00242		.	FALSE
chr1	154919080	C	T	0.00376	PBXIP1	-	FALSE
chr1	160967899	T	C	0.00011	F11R	-	TRUE	AluSp	SINE,Alu
chr16	24807247	G	A	0.00417	TNRC6A	+	FALSE
chr10	114209888	A	G	0.00386	VTI1A	+	TRUE	AluSx3	SINE,Alu
chr5	125962176	A	G	0.00020	PHAX	+	TRUE	AluSc	SINE,Alu
chr1	19665310	C	T	0.00618	CAPZB	-	FALSE	(TTTCT)n	SINE,Alu
chr14	74524944	T	C	0.00567	BBOF1,ALDH6A1	+,-	FALSE	AluSc8	SINE,Alu
chr7	102006488	A	T	0.00168	LOC100289561,LOC100630923	+	FALSE
chr1	227845283	C	A	0.00809	ZNF678	+	FALSE
chr2	47703548	G	A	5.05442E-05	MSH2	+	FALSE
chr2	61277798	A	G	0.00077	PEX13	+	TRUE	AluY	SINE,Alu
chr3	52567617	A	G	0.00025	NT5DC2	-	FALSE	G-rich	SINE,Alu
chr7	30825575	C	A	0.00101	INMT-FAM188B,FAM188B	+	FALSE
chr10	61548852	G	A	0.00693	CCDC6	-	FALSE
chr1	39470978	T	A	0.00378	AKIRIN1	+	FALSE	AluSx1	SINE,Alu
chr12	12967264	C	G	0.00781	DDX47	+	FALSE
chr1	27205871	G	T	0.00931		.	FALSE
chr1	10518591	A	T	0.00169		.	FALSE
chr11	8707908	A	G	0.00262	RPL27A	+	TRUE	AluSx1	SINE,Alu
chr3	88104162	T	C	0.00106	CGGBP1	-	FALSE
chr1	10520130	T	C	0.00355		.	FALSE	AluSx	SINE,Alu
chr1	53289759	A	G	0.00383	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr8	124027562	C	T	0.00674	DERL1	-	FALSE
chr1	6614230	G	A	0.00509	NOL9	-	FALSE
chr1	110596904	A	G	0.00364	STRIP1	+	FALSE
chr1	148251009	T	C	0.00065	NBPF8,NBPF14,NBPF9	-	TRUE
chr6	158613395	C	A	0.00031	GTF2H5	+	FALSE
chr10	99504630	G	T	0.00544	ZFYVE27	+	FALSE
chr1	115248084	C	T	0.00171	NRAS	-	FALSE
chr20	43996145	T	A	0.00611	SYS1-DBNDD2,SYS1	+	FALSE
chr2	128620435	C	A	0.00602	AMMECR1L	-	FALSE
chr2	217366499	A	G	0.00063		.	FALSE	AluSz	SINE,Alu
chr1	25570563	A	T	0.00276	RSRP1	-	FALSE	Alu	SINE,Alu
chr2	176792488	G	T	0.00195	LNPK	-	FALSE
chr1	224621934	G	C	0.00245	WDR26	-	FALSE	(GGA)n	SINE,Alu
chr3	10193475	A	G	0.00110	VHL	+	TRUE	AluJr	SINE,Alu
chr2	3597974	T	C	1.93309E-05	RNASEH1	-	FALSE
chr1	40147817	C	A	0.00982	HPCAL4	-	FALSE
chr1	203822584	T	C	5.41257E-07	ZC3H11A	+	FALSE
chr1	62579758	G	A	0.00250	PATJ	+	FALSE
chr1	148341981	T	C	0.00226	NBPF8,NBPF14,NBPF9	-	FALSE
chr1	22400707	C	G	0.00232	CDC42	+	FALSE	AluSc8	SINE,Alu
chr1	68940566	A	C	0.00126	DEPDC1	-	FALSE
chr3	127341226	A	G	0.00049	MCM2	+	FALSE
chr5	130494984	A	T	0.00018	HINT1	-	FALSE
chr1	79356178	C	A	0.00678	ADGRL4	-	FALSE
chr1	19565338	C	T	0.00631	LOC101927895,EMC1	+,-	FALSE
chr8	9639522	A	G	0.00823	TNKS	+	TRUE	MER53	SINE,Alu
chr2	37330611	T	C	0.00629		.	FALSE	AluSq2	SINE,Alu
chr1	179813613	T	C	7.15786E-05	TOR1AIP2	-	FALSE
chr6	29910583	C	T	4.95604E-05		.	FALSE
chr1	145689537	A	G	0.00028	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr2	38971040	G	T	0.00651	SRSF7	-	FALSE
chr4	2951804	A	G	7.08227E-08	NOP14-AS1,NOP14	+,-	FALSE
chr11	8707396	C	A	0.00081	RPL27A	+	FALSE
chr1	145282799	G	A	0.00882	NBPF20,NOTCH2NL	+	FALSE
chr2	234386134	A	G	0.00196	USP40	-	FALSE
chr6	160100926	T	C	0.00028	SOD2	-	TRUE	AluSz	SINE,Alu
chr12	69237056	A	G	0.00372	MDM2	+	TRUE
chr1	20811795	G	C	0.00047	CAMK2N1	-	FALSE
chr1	2336210	C	T	0.00509	RER1	+	FALSE
chr1	44447004	G	A	0.00768	B4GALT2	+	FALSE	(CAG)n	SINE,Alu
chrM	5265	C	A	0.00026		.	FALSE
chr1	19543797	T	C	0.00754	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr21	46353985	A	G	0.00985	LINC01547	-	FALSE	MER5A	SINE,Alu
chr7	137561078	G	A	0.00558	CREB3L2	-	FALSE	(GT)n	SINE,Alu
chr1	10042988	A	G	0.00095	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr3	44790781	T	C	0.00158	KIAA1143	-	TRUE	AluY	SINE,Alu
chr1	145282904	A	G	0.00542	NBPF20,NOTCH2NL	+	FALSE	L2a	SINE,Alu
chr4	103809241	A	T	0.00073	CISD2,SLC9B1	+,-	FALSE
chr19	9673275	T	C	0.00081		.	FALSE	Tigger1	SINE,Alu
chr1	168220364	A	G	6.18665E-05		.	FALSE	AluSz6	SINE,Alu
chr19	1037984	T	C	0.00908	CNN2	+	FALSE	(TT)n	SINE,Alu
chr1	16889575	T	C	0.00467	NBPF1	-	TRUE

RBP	FKBP4
Knock-Method	shRNA
RBP Family	Non-canonical_RBP
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR639LKS
Platform	HiSeq
Pubmed ID	32252787

FKBP4 - Target Gene Network