RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	164473	T	C	0.00152		.	FALSE	AluSq2	SINE,Alu
chr1	15989141	C	G	0.00677		.	FALSE
chr1	230416399	G	T	5.37638E-05	GALNT2	+	FALSE
chr1	52817376	T	C	0.00175	CC2D1B	-	TRUE	AluSg4	SINE,Alu
chr19	198079	T	C	0.00933	LINC01002	-	FALSE
chr1	33149495	A	G	0.00421	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	10520725	T	C	0.00795	DFFA	-	TRUE	AluSc8	SINE,Alu
chr20	25427823	A	G	0.00054	GINS1	+	TRUE	AluSz	SINE,Alu
chr1	78142911	T	C	0.00925	ZZZ3	-	TRUE	AluSx	SINE,Alu
chr5	10265488	A	G	0.00120	CCT5	+	FALSE
chr3	15113657	T	C	2.06253E-05	RBSN	-	TRUE	AluSz6	SINE,Alu
chr2	192555801	C	A	0.00628	LOC105747689	+	FALSE
chr1	39989926	T	C	0.00354	BMP8A,PPIEL	+,-	FALSE
chr2	100897573	G	A	0.00231	LONRF2	-	FALSE
chr19	12742506	A	G	2.74962E-05		.	FALSE	AluSx	SINE,Alu
chr1	97543764	C	T	0.00353	DPYD	-	FALSE
chr4	120219638	A	T	0.00970	C4orf3	-	FALSE
chr1	19542310	T	C	0.00112	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr3	49460407	C	T	0.00080	NICN1	-	FALSE	L2c	SINE,Alu
chr2	37327702	T	C	0.00179		.	FALSE
chr1	46076462	A	G	1.23194E-07	NASP	+	TRUE	AluSx	SINE,Alu
chr5	31554465	A	T	1.69098E-06	C5orf22	+	FALSE
chr2	191184475	A	G	0.00895	HIBCH	-	FALSE
chr1	145273431	A	G	0.00203	NBPF20,NOTCH2NL	+	FALSE
chr2	9630231	C	T	0.00895	ADAM17	-	FALSE
chr1	32373858	A	T	0.00100	PTP4A2	-	FALSE
chr1	200589813	C	A	0.00034	KIF14	-	FALSE
chr3	40578843	A	G	0.00221	ZNF621	+	TRUE	AluJr	SINE,Alu
chr6	26095468	A	G	0.00980	HFE	+	TRUE	AluY	SINE,Alu
chr1	10520888	C	T	0.00960	DFFA	-	FALSE
chr1	28826023	A	G	0.00342	PHACTR4	+	FALSE	AluJb	SINE,Alu
chr3	88104168	C	T	0.00919	CGGBP1	-	FALSE
chr5	118174745	T	C	0.00084	DTWD2	-	TRUE	AluY	SINE,Alu
chr1	52817432	T	C	0.00518	CC2D1B	-	TRUE	AluSg4	SINE,Alu
chr1	9328120	A	G	4.35354E-06	H6PD	+	TRUE	AluJr	SINE,Alu
chr1	100488177	C	T	0.00080	SLC35A3	+	FALSE
chr2	272203	C	T	1.58440E-08	ACP1	+	FALSE
chr1	32801724	T	G	0.00816	MARCKSL1	-	FALSE
chr2	191067764	A	T	0.00165	C2orf88	+	FALSE
chr11	118875356	A	G	0.00051	CCDC84	+	TRUE
chr1	26158907	A	G	0.00061	MTFR1L,AUNIP	+,-	FALSE
chr1	36530674	A	G	0.00603		.	FALSE	AluSg	SINE,Alu
chr1	45976723	T	C	0.00340	MMACHC,PRDX1	+,-	FALSE
chr1	227922767	G	T	0.00202	SNAP47,JMJD4	+,-	FALSE
chr1	94351062	T	A	0.00189	GCLM	-	FALSE
chr2	32447868	A	G	0.00663	SLC30A6	+	FALSE
chr2	206987205	T	C	0.00039		.	FALSE	AluSx	SINE,Alu
chr1	114443608	A	G	0.00147	AP4B1-AS1,AP4B1	+,-	FALSE	AluSp	SINE,Alu
chr1	2323041	T	C	0.00970	MORN1	-	FALSE
chr1	1252309	A	T	0.00403	CPSF3L	-	FALSE	AluSx	SINE,Alu
chr1	40537924	G	A	0.00404	CAP1	+	FALSE	(A)n	SINE,Alu
chr1	10437995	G	A	0.00427	KIF1B	+	FALSE	AluSg	SINE,Alu
chr1	6582701	T	C	1.54245E-05	NOL9	-	TRUE	AluSg	SINE,Alu
chr17	3561396	C	T	0.00322	CTNS	+	FALSE
chr16	75479474	T	C	2.06057E-06	TMEM170A	-	TRUE	AluJb	SINE,Alu
chr4	76568479	T	A	0.00825	G3BP2	-	FALSE
chr1	46075715	A	G	0.00842	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	203771852	G	T	0.00883	ZC3H11A	+	FALSE	(T)n	SINE,Alu
chr19	7084638	A	G	0.00024	ZNF557	+	TRUE	AluJb	SINE,Alu
chr22	38285016	A	G	0.00030		.	FALSE	AluSz	SINE,Alu
chr1	9162206	T	C	0.00882		.	FALSE	AluSx	SINE,Alu
chr1	17345250	A	T	0.00183	SDHB	-	FALSE
chr1	160967856	T	C	0.00027	F11R	-	TRUE	AluSp	SINE,Alu
chr1	156495520	T	A	0.00048	IQGAP3	-	FALSE
chr1	21102501	G	A	0.00148	HP1BP3	-	FALSE
chr1	201434740	G	A	0.00471	PHLDA3	-	FALSE
chr1	29446554	C	A	0.00682	EPB41,TMEM200B	+,-	FALSE
chr2	32582399	T	G	0.00147	BIRC6	+	FALSE	(GGC)n	SINE,Alu
chr1	20826781	C	T	1.74444E-05	MUL1	-	FALSE
chr2	99812817	A	G	0.00201	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	78414329	G	A	0.00303	FUBP1	-	FALSE	A-rich	SINE,Alu
chr13	31033325	C	A	0.00792	HMGB1	-	FALSE
chr12	56510697	G	A	0.00055	RPL41	+	FALSE
chr1	10440643	A	G	0.00055	KIF1B	+	TRUE	AluSx	SINE,Alu
chr9	33046889	T	A	0.00932	SMU1	-	FALSE	AluSz	SINE,Alu
chr1	85785550	C	A	0.00156	DDAH1	-	FALSE
chr14	75202312	A	G	3.27721E-05	FCF1	+	TRUE	AluSc	SINE,Alu
chr1	16945027	T	C	0.00819	CROCCP2	-	FALSE	L1ME3Cz	SINE,Alu
chr2	170403030	T	C	0.00294	FASTKD1	-	FALSE
chr1	242012149	C	T	0.00334	EXO1	+	FALSE
chr1	16933631	G	A	0.00927	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr1	118167515	C	T	0.00852	FAM46C	+	FALSE
chr15	41593352	A	G	0.00083		.	FALSE	AluSz6	SINE,Alu
chr1	144604425	C	T	0.00269	NBPF20	+	FALSE
chr9	135172412	A	G	0.00394	SETX	-	FALSE
chr9	119162301	A	T	0.00778	PAPPA,PAPPA-AS1	+,-	FALSE	(GAAA)n	SINE,Alu
chr1	10520588	T	C	0.00341		.	FALSE	AluSc8	SINE,Alu
chr6	31378387	T	C	0.00207		.	FALSE
chr1	179044100	A	G	0.00897	FAM20B	+	TRUE	AluSx	SINE,Alu
chr14	23795222	T	G	0.00162	BCL2L2-PABPN1,PABPN1	+	FALSE
chr9	139417333	G	A	0.00463	NOTCH1	-	FALSE
chr2	74349080	A	G	0.00094		.	FALSE	AluSz	SINE,Alu
chr1	52520867	T	A	7.48778E-05	TXNDC12	-	FALSE
chr1	11982544	T	C	4.37710E-05	KIAA2013	-	FALSE
chr2	36706788	C	G	0.00481	CRIM1	+	FALSE
chr10	104417853	T	A	0.00393	TRIM8	+	FALSE	(AAT)n	SINE,Alu
chr1	1595540	T	C	0.00830	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr1	145513112	A	G	0.00080	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	150446028	G	T	0.00624	RPRD2	+	FALSE
chr1	16203171	C	T	3.13656E-06	SPEN	+	FALSE
chr1	109818160	T	G	0.00745	CELSR2	+	FALSE
chr1	16889642	T	C	0.00017	NBPF1	-	TRUE
chr3	98298600	C	T	3.56177E-11	CPOX	-	FALSE
chr19	9673113	T	C	0.00330		.	FALSE	AluSx3	SINE,Alu
chr1	78029905	T	A	0.00256	ZZZ3	-	FALSE
chr3	124948047	C	G	0.00670	ZNF148	-	FALSE
chr1	205687344	C	T	0.00633	NUCKS1	-	FALSE	(T)n	SINE,Alu
chr10	115526177	A	G	0.00237	PLEKHS1	+	FALSE
chr1	144614931	G	A	0.00469	NBPF20	+	FALSE
chr1	1246978	A	T	0.00760	PUSL1,CPSF3L	+,-	FALSE
chr1	16529004	A	C	3.00007E-07	ARHGEF19	-	FALSE
chr17	57281021	A	G	9.11421E-05	PRR11	+	TRUE	AluSz	SINE,Alu
chr8	48890109	A	G	0.00750	MCM4	+	TRUE	AluJb	SINE,Alu
chr1	45975673	A	G	0.00827	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr1	36067760	T	C	0.00044	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	10042988	A	G	0.00095	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr12	125514120	A	G	0.00232		.	FALSE	(TA)n	SINE,Alu
chr5	174955746	G	C	0.00768	SFXN1	+	FALSE
chr19	63721	T	G	0.00602	WASH5P	-	FALSE
chr17	49042242	T	C	0.00054	SPAG9	-	TRUE	AluJb	SINE,Alu
chr1	36755235	A	G	0.00562	THRAP3	+	FALSE
chr6	143661166	A	C	0.00536	AIG1	+	FALSE
chr15	41590839	A	G	0.00344	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr1	41972198	A	T	0.00276	HIVEP3	-	FALSE
chr1	36068325	T	C	3.42972E-06	PSMB2	-	TRUE	AluSc	SINE,Alu
chr4	761850	T	C	0.00026	PCGF3	+	FALSE
chr1	10366487	T	G	0.00187	KIF1B	+	FALSE
chr1	173862270	G	C	0.00197		.	FALSE	AluSz6	SINE,Alu
chr2	206984202	T	C	0.00849		.	FALSE	AluSx	SINE,Alu
chr2	178129405	C	T	0.00295	NFE2L2	-	FALSE	(CGG)n	SINE,Alu
chr1	154919080	C	T	0.00376	PBXIP1	-	FALSE
chr12	27955296	C	T	3.87648E-07	KLHL42	+	FALSE
chr4	145031951	T	A	0.00377	GYPA	-	FALSE	(TG)n	SINE,Alu
chr1	32508397	T	C	0.00166	KHDRBS1	+	FALSE
chr9	89627066	A	G	0.00588	LOC440173	-	FALSE
chr19	11560483	A	G	0.00775	PRKCSH	+	TRUE	AluSx	SINE,Alu
chr1	10520684	T	C	0.00842	DFFA	-	TRUE	AluSc8	SINE,Alu
chr5	149823789	G	T	0.00793		.	FALSE
chr1	36068294	T	C	0.00321	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	37328013	T	C	0.00010		.	FALSE
chr7	137561078	G	A	0.00558	CREB3L2	-	FALSE	(GT)n	SINE,Alu
chr1	46164493	T	C	0.00330	IPP	-	TRUE	AluJb	SINE,Alu
chr15	92715131	A	T	0.00306	SLCO3A1	+	FALSE
chr1	9162394	T	C	0.00072		.	FALSE	AluSx	SINE,Alu
chr1	111489903	A	C	0.00666	LRIF1	-	FALSE
chr1	78029102	G	A	0.00086	ZZZ3	-	FALSE
chr7	65618786	A	G	3.58027E-08	CRCP	+	TRUE	AluSx3	SINE,Alu
chr2	37872508	G	A	5.12140E-05	CDC42EP3	-	FALSE
chr1	19543352	T	C	0.00087	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chrX	24095325	A	G	7.48023E-10	EIF2S3	+	TRUE	AluSx	SINE,Alu
chr5	140564263	C	T	0.00475	PCDHB16	+	FALSE
chr8	22111410	A	G	0.00396		.	FALSE	AluSz	SINE,Alu
chr16	88763958	G	A	7.55606E-05	RNF166	-	FALSE
chr1	47717189	A	G	0.00384	STIL	-	FALSE
chr2	37330606	T	C	0.00136		.	FALSE	AluSq2	SINE,Alu
chr7	6500726	A	T	0.00560	KDELR2	-	FALSE
chr3	10976876	A	G	0.00343	SLC6A11	+	FALSE
chr19	11256725	T	C	0.00096	SPC24	-	TRUE	AluJr4	SINE,Alu
chr4	141600320	A	G	0.00179	TBC1D9	-	FALSE
chr1	214524496	T	C	0.00114	PTPN14	-	TRUE	AluSg	SINE,Alu
chr12	100562932	G	T	0.00079	GOLGA2P5	-	FALSE	AluSg	SINE,Alu
chr5	43298557	C	T	0.00643	HMGCS1	-	FALSE
chr7	22981942	G	A	0.00041	FAM126A	-	FALSE
chr3	191114266	T	C	0.00258	CCDC50	+	FALSE
chr1	145283733	A	G	0.00458	NBPF20,NOTCH2NL	+	FALSE
chr1	28920944	A	G	0.00446	RAB42	+	TRUE	AluSx	SINE,Alu
chr1	38327545	T	C	0.00602	INPP5B	-	TRUE	AluSx3	SINE,Alu
chr2	61764895	C	A	0.00862	XPO1	-	FALSE	(AC)n	SINE,Alu
chr1	63924020	C	T	0.00139	ITGB3BP	-	FALSE
chr5	147793406	A	G	0.00323	FBXO38	+	FALSE
chr15	49454018	C	T	0.00053	GALK2	+	FALSE	AluSx1	SINE,Alu
chr2	174090331	A	C	0.00901	ZAK,MLK7-AS1	+,-	FALSE	AluSx	SINE,Alu
chr2	85547772	G	C	0.00871	TGOLN2	-	FALSE
chr1	90048248	C	T	3.54659E-05	LRRC8B	+	FALSE
chr19	39981168	A	G	0.00446	TIMM50	+	TRUE	AluJr	SINE,Alu
chr1	9160996	T	C	0.00023		.	FALSE	AluJb	SINE,Alu
chr1	53680205	C	T	4.54902E-05	C1orf123	-	FALSE
chr10	60047609	A	G	0.00979	CISD1	+	FALSE	(A)n	SINE,Alu
chr1	168218504	T	C	0.00748		.	FALSE	AluSz	SINE,Alu
chr3	10192798	A	G	0.00014	VHL	+	TRUE	AluSx1	SINE,Alu
chr4	57327092	A	G	0.00091	PAICS	+	TRUE	AluSx1	SINE,Alu
chr2	217366919	A	G	0.00197		.	FALSE	AluSz6	SINE,Alu
chr13	52952680	G	A	7.53266E-06	THSD1	-	FALSE
chr1	204520250	A	G	0.00706	MDM4	+	TRUE	AluJb	SINE,Alu
chr8	124262076	G	T	0.00115	ZHX1-C8orf76,ZHX1	-	FALSE
chr2	37331077	T	C	0.00937		.	FALSE	AluSx1	SINE,Alu
chr1	28825781	A	G	0.00166	PHACTR4	+	TRUE	AluSp	SINE,Alu
chr2	37331125	T	C	0.00036		.	FALSE	AluSx1	SINE,Alu
chr7	924602	A	G	0.00195	GET4	+	TRUE	AluJb	SINE,Alu
chr2	32534897	A	G	0.00111		.	FALSE	AluSx1	SINE,Alu
chr1	6684050	G	A	2.21294E-05	PHF13	+	FALSE
chr1	16574382	A	C	0.00704	FBXO42	-	FALSE
chr1	160967843	T	C	0.00247	F11R	-	TRUE	AluSp	SINE,Alu
chr22	16148871	T	G	0.00071		.	FALSE	Tigger1	SINE,Alu
chr1	42881767	G	C	0.00437	RIMKLA	+	FALSE
chr2	128602913	G	A	0.00230		.	FALSE
chr1	204524546	A	G	0.00054	MDM4	+	TRUE	AluY	SINE,Alu
chr1	21100862	C	A	0.00012	HP1BP3	-	FALSE	(AC)n	SINE,Alu
chr11	126147713	C	G	0.00384	FOXRED1	+	FALSE
chr1	26608019	T	A	3.63623E-05		.	FALSE
chr1	27992800	C	A	5.71645E-05	IFI6	-	FALSE	FAM	SINE,Alu
chr1	45244433	G	A	0.00060		.	FALSE
chr2	61276750	A	G	0.00231	PEX13	+	TRUE	AluSp	SINE,Alu
chr13	47325380	G	A	0.00270	LRCH1	+	FALSE

RBP	CNOT8
Knock-Method	shRNA
RBP Family	CAF1
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR312HJY
Platform	HiSeq
Pubmed ID	32252787

CNOT8 - Target Gene Network