RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	9162224	T	C	0.00523		.	FALSE	AluSx	SINE,Alu
chr1	145586403	G	T	0.00075	NBPF20,NBPF10,PIAS3	+	FALSE
chr2	113287200	C	T	0.00087	TTL	+	FALSE	(T)n	SINE,Alu
chr1	101444071	G	A	0.00963	SLC30A7	+	FALSE	MIR3	SINE,Alu
chr1	32742441	G	A	2.50972E-10	LCK	+	FALSE
chr7	138740037	G	C	0.00598	ZC3HAV1	-	FALSE
chr15	63356574	G	A	0.00845	TPM1	+	FALSE
chr4	17803026	T	C	0.00396	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	16576295	G	A	0.00139	FBXO42	-	FALSE	A-rich	SINE,Alu
chr1	36024788	C	T	5.60663E-14	NCDN	+	FALSE
chr1	36602178	A	T	0.00764	TRAPPC3	-	FALSE
chr6	42045545	A	G	0.00440	TAF8	+	TRUE	AluSz	SINE,Alu
chr4	6302519	G	A	0.00195	WFS1	+	FALSE
chr1	160967890	T	C	0.00876	F11R	-	TRUE	AluSp	SINE,Alu
chr1	38280010	C	T	0.00393	MTF1	-	FALSE
chr2	3592638	T	C	0.00941	RNASEH1	-	TRUE	AluSz6	SINE,Alu
chr1	207247477	T	C	2.68116E-05	PFKFB2	+	FALSE	MER5B	SINE,Alu
chr1	9331254	A	G	0.00793	H6PD	+	TRUE	AluSx	SINE,Alu
chr4	2940085	T	C	8.20099E-05	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	93804952	G	A	0.00421	CCDC18-AS1	-	FALSE
chr2	37331546	T	C	0.00936		.	FALSE	AluJb	SINE,Alu
chr17	53470462	C	T	0.00230	MMD	-	FALSE
chr1	10520532	T	C	0.00142		.	FALSE	AluSx1	SINE,Alu
chr1	145375869	G	A	0.00480	NBPF20,NBPF10	+	FALSE
chr3	160969268	C	T	0.00835	NMD3	+	FALSE
chr1	65147002	C	T	6.62669E-07	CACHD1	+	FALSE
chr3	120115286	T	G	0.00077	FSTL1	-	FALSE
chr16	75479474	T	C	2.06057E-06	TMEM170A	-	TRUE	AluJb	SINE,Alu
chr2	99812988	A	G	8.76694E-05	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	16112795	A	G	0.00499	FBLIM1	+	FALSE
chr2	206861649	T	A	0.00066	INO80D	-	FALSE
chr2	215674224	G	A	9.97816E-05	BARD1	-	FALSE
chr1	109855150	A	C	0.00251	SORT1	-	FALSE	A-rich	SINE,Alu
chr1	12058869	C	T	0.00027	MFN2	+	FALSE
chr1	10519912	T	C	0.00750		.	FALSE	AluJr	SINE,Alu
chr1	183596136	A	G	0.00123	ARPC5	-	FALSE
chr1	206579936	A	G	0.00424	SRGAP2	+	FALSE
chr1	36067886	T	C	0.00925	PSMB2	-	TRUE	AluSz	SINE,Alu
chr5	98128999	G	A	0.00663	RGMB	+	FALSE
chr1	19542455	T	C	0.00048	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	68167935	A	G	0.00390	GNG12	-	FALSE
chr1	3731965	G	A	0.00209	CEP104	-	FALSE
chr1	19934900	G	A	0.00605	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr2	217366570	A	G	0.00332		.	FALSE	AluSz	SINE,Alu
chr2	99813003	A	G	0.00370	MRPL30	+	TRUE	AluJb	SINE,Alu
chr2	44459528	G	A	0.00100	PPM1B	+	FALSE
chr1	168214098	T	G	0.00134		.	FALSE
chr19	49619561	T	C	2.39173E-05	LIN7B	+	FALSE
chr1	53291382	A	G	0.00114	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	144598755	G	A	0.00044	NBPF20	+	FALSE
chr4	144442611	T	C	0.00899	SMARCA5	+	FALSE
chr1	67874731	T	C	0.00125	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr2	206983267	T	C	0.00133		.	FALSE	AluJb	SINE,Alu
chr19	7116159	G	T	0.00368	INSR	-	FALSE
chr1	36068295	T	C	2.11660E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	23381596	T	C	0.00762	KDM1A	+	FALSE
chr3	195962244	G	T	0.00083		.	FALSE
chr1	155106227	A	T	0.00214	EFNA1	+	FALSE
chr3	71005566	C	T	0.00209	FOXP1	-	FALSE	(T)n	SINE,Alu
chr3	196662641	T	C	0.00089	NCBP2	-	FALSE
chr2	217366195	C	A	0.00929		.	FALSE
chr10	53456599	A	G	0.00339	PRKG1,CSTF2T	+,-	FALSE
chr12	56510709	G	A	0.00047	RPL41	+	FALSE
chr2	180810264	A	T	1.24157E-05	CWC22	-	FALSE
chr15	52203664	A	C	0.01000	TMOD3	+	FALSE
chr3	186505900	T	G	1.87786E-07	EIF4A2	+	FALSE
chr1	94352553	C	T	0.00136	GCLM	-	FALSE	AluSx1	SINE,Alu
chr19	42375554	A	G	0.00458		.	FALSE	AluSx	SINE,Alu
chr1	89648329	T	C	0.00093	GBP4	-	TRUE	AluYg6	SINE,Alu
chr20	35521047	T	A	0.00064	TLDC2,SAMHD1	+,-	FALSE
chr14	19686228	C	T	0.00106	DUXAP10	+	FALSE
chr1	10519912	T	C	0.00185		.	FALSE	AluJr	SINE,Alu
chr1	153587308	C	T	0.00077	S100A14	-	FALSE
chr2	86364710	T	C	0.00273	PTCD3	+	FALSE
chr1	1595527	T	C	0.00139	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr5	1574319	T	A	0.00158	SDHAP3	-	FALSE
chr5	125961649	A	G	3.29658E-05	PHAX	+	TRUE	AluSz6	SINE,Alu
chr2	113289701	T	G	0.00994	TTL	+	FALSE
chr1	120839682	A	G	0.00073	FAM72B	+	FALSE
chr1	19585493	A	G	3.52757E-05	MRTO4	+	TRUE	AluSc8	SINE,Alu
chr5	1317949	C	T	0.00173	CLPTM1L	-	FALSE
chr1	16889414	T	C	0.00384	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr2	56611541	G	A	0.00521	CCDC85A	+	FALSE
chr2	61705068	A	T	0.00103		.	FALSE
chr1	45244411	C	A	0.00362	RPS8	+	FALSE
chr1	155429590	G	T	0.00356	ASH1L	-	FALSE
chr14	23300663	G	A	0.00120	MRPL52	+	FALSE	MIRb	SINE,Alu
chr1	117530213	G	T	0.00256	PTGFRN	+	FALSE
chr1	10520153	T	C	0.00907		.	FALSE	AluSx	SINE,Alu
chr6	46128910	A	G	0.00782	ENPP5	-	FALSE	(GT)n	SINE,Alu
chr16	48387238	A	G	0.00013	LONP2,MIR5095	+	TRUE	AluJb	SINE,Alu
chr17	57281125	A	G	0.00204	PRR11	+	TRUE	AluSz	SINE,Alu
chr1	26901090	C	T	0.00952	RPS6KA1	+	FALSE
chr22	16148871	T	G	0.00071		.	FALSE	Tigger1	SINE,Alu
chr1	45975266	A	G	0.00188	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr1	162354203	A	G	0.00956	C1orf226	+	FALSE
chr5	90074268	G	A	0.00240	ADGRV1	+	FALSE
chr1	184761312	T	C	0.00443	FAM129A	-	TRUE	AluJo	SINE,Alu
chr4	17802819	T	C	0.00316	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	1572530	A	C	0.00425	CDK11B	-	FALSE
chr5	40835311	A	T	0.00632	RPL37	-	FALSE
chr1	9161365	T	C	4.68504E-05		.	FALSE	AluSx	SINE,Alu
chr1	118503786	A	G	0.00135	SPAG17	-	FALSE	AluSx3	SINE,Alu
chr3	8922054	T	C	0.00464	RAD18	-	FALSE
chr1	156565045	C	A	0.00995	GPATCH4	-	FALSE
chr19	1981317	T	A	0.00539	CSNK1G2	+	FALSE
chr1	32638906	C	T	5.73102E-10	KPNA6	+	FALSE
chr7	17384395	A	G	0.00856	AHR	+	TRUE	AluSx	SINE,Alu
chr6	13788342	T	C	0.00048	MCUR1	-	TRUE	AluSx	SINE,Alu
chr3	39137793	C	T	0.00363	WDR48	+	FALSE
chr1	19586455	A	G	0.00772	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	10517688	T	C	0.00020		.	FALSE	AluSx1	SINE,Alu
chr3	123332546	C	G	0.00964	MYLK-AS1,MYLK	+,-	FALSE
chr2	46524711	C	T	0.00513	EPAS1	+	FALSE
chr1	46075783	A	G	0.00755	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	89447856	A	G	0.00465	KYAT3,RBMXL1	-	FALSE
chr1	36531781	G	A	0.00288		.	FALSE
chr3	49142142	G	T	6.70614E-05	QARS	-	FALSE
chr3	15114759	G	A	1.99109E-05	RBSN	-	FALSE
chr1	569492	T	C	0.00336		.	FALSE
chr1	28826085	A	G	0.00281	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	567783	T	C	0.00817	MIR6723	-	FALSE
chr1	42886523	T	C	0.00649	RIMKLA	+	FALSE	MIRc	SINE,Alu
chr1	31426815	A	G	0.00797	PUM1	-	FALSE
chr5	130540369	C	A	0.00196	LYRM7	+	FALSE	Tigger4a	SINE,Alu
chr7	77409288	A	G	7.47972E-05		.	FALSE	AluSc	SINE,Alu
chr15	65442506	T	C	0.00088	CLPX	-	TRUE	AluSg4	SINE,Alu
chr6	29704336	G	A	0.00207		.	FALSE	L1ME3A	SINE,Alu
chr1	19542463	T	C	0.00060	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr3	10193732	A	G	0.00472	VHL	+	TRUE	AluJr	SINE,Alu
chr1	26604691	G	C	0.00043	CEP85	+	FALSE
chr2	64687665	C	A	0.00976	LGALSL	+	FALSE
chr16	80636808	C	T	0.00881	CDYL2	-	FALSE
chr2	85772404	C	A	0.00015	GGCX	-	FALSE
chr4	2940371	T	C	0.00905	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	31902343	T	C	1.48709E-05	SERINC2	+	FALSE
chr3	49397323	T	C	0.00000	RHOA	-	TRUE
chr2	242384368	G	A	0.00096	FARP2	+	FALSE	AluJr	SINE,Alu
chr1	85733095	G	A	0.00651	BCL10	-	FALSE
chr1	65897981	G	A	0.00025	LEPR,LEPROT	+	FALSE
chr3	15114385	T	C	0.00146	RBSN	-	TRUE	AluY	SINE,Alu
chr4	39550981	T	C	5.85020E-07	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr1	59004766	G	T	0.00213	OMA1	-	FALSE
chr1	10521172	T	C	1.01590E-06	DFFA	-	TRUE	AluY	SINE,Alu
chr1	40214333	A	G	0.00112	PPIE	+	TRUE	AluSq2	SINE,Alu
chr2	71298486	T	C	0.00408	NAGK	+	FALSE
chr16	75479467	T	C	0.00160	TMEM170A	-	TRUE	AluJb	SINE,Alu
chr4	120979673	T	C	0.00074		.	FALSE	AluSg	SINE,Alu
chr1	9163290	T	C	0.00130		.	FALSE	AluSp	SINE,Alu
chr2	50147865	T	A	0.00112	NRXN1	-	FALSE	(GT)n	SINE,Alu
chr1	11982580	G	A	2.06927E-05	KIAA2013	-	FALSE
chr3	10005392	T	C	8.76084E-06	EMC3	-	FALSE	AluSg7	SINE,Alu
chr11	119533726	A	G	0.00169	NECTIN1	-	FALSE
chr1	145689025	A	G	0.00541	NBPF20,NBPF10	+	TRUE	AluSc8	SINE,Alu
chr4	1006333	G	A	0.00117	FGFRL1	+	FALSE	(CTG)n	SINE,Alu
chr1	11298093	C	T	1.54321E-14	MTOR	-	FALSE
chr1	33148214	A	G	0.00734	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	15989141	C	G	0.00364		.	FALSE
chr5	118174757	T	C	0.00032	DTWD2	-	TRUE	AluY	SINE,Alu
chr1	31732602	C	A	0.00336	SNRNP40	-	FALSE
chr1	24022910	G	A	0.00702	RPL11	+	FALSE
chr3	81539382	C	T	1.63276E-05	GBE1	-	FALSE
chr1	28939803	C	T	1.99823E-11	TAF12	-	FALSE
chr1	24022914	A	G	0.00347	RPL11	+	FALSE
chr1	6354955	G	A	0.00282	ACOT7	-	FALSE
chr11	20101744	C	A	0.00540	NAV2	+	FALSE
chr1	149913733	T	C	0.00143	OTUD7B	-	TRUE	MER96B	SINE,Alu
chr1	211918115	C	T	0.00979	LPGAT1	-	FALSE	MER63D	SINE,Alu
chr1	201845903	A	G	0.00041	IPO9	+	FALSE
chr2	9629954	T	C	0.00308	ADAM17	-	FALSE
chr2	29135468	C	G	0.00262	WDR43	+	FALSE
chr2	85132775	C	G	7.25564E-06	TMSB10	+	FALSE
chr1	10520117	T	C	0.00188		.	FALSE	AluSx	SINE,Alu
chr1	16890176	A	C	0.00753	NBPF1	-	FALSE
chr3	45266555	T	C	1.22536E-07	TMEM158	-	FALSE
chr1	16889575	T	C	0.00969	NBPF1	-	TRUE
chr1	569991	T	G	0.00980		.	FALSE
chr1	32799508	A	C	8.53764E-05	MARCKSL1	-	FALSE
chr2	191799592	A	G	0.00010	GLS	+	TRUE
chr4	169911126	C	A	0.00122	CBR4	-	FALSE
chr1	205737659	C	T	0.00024	RAB29	-	FALSE	AluSq2	SINE,Alu
chr1	36068166	T	C	0.00686	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	220406239	T	G	0.00014	CHPF	-	FALSE	MIRb	SINE,Alu
chr1	158631171	A	C	0.00815	SPTA1	-	FALSE
chr1	207219603	T	C	0.00341	YOD1	-	FALSE
chr3	48787042	T	C	1.97898E-05	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr1	144614931	G	A	0.00469	NBPF20	+	FALSE
chr1	23636031	T	A	0.00965	HNRNPR	-	FALSE
chr1	145512944	A	G	0.00171	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	121133779	C	G	2.29819E-05	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	L1MB4	SINE,Alu
chr1	36770605	C	T	8.58098E-05	THRAP3	+	FALSE	(T)n	SINE,Alu
chr2	61764916	A	C	0.00189	XPO1	-	FALSE	(AC)n	SINE,Alu
chr1	31837516	G	C	5.10721E-05	ZCCHC17	+	FALSE
chr1	144902696	A	T	0.00997	NBPF20,PDE4DIP	+,-	FALSE
chr2	183642878	G	A	0.00373	DNAJC10	+	FALSE
chr1	203277245	G	A	0.00115	BTG2	+	FALSE
chr20	35521048	A	T	0.00727	TLDC2,SAMHD1	+,-	FALSE
chr2	216903544	T	C	0.00929	PECR	-	TRUE	AluSx3	SINE,Alu
chr15	63445744	A	T	0.00539	RPS27L	-	FALSE
chr2	99812429	A	G	0.00504	MRPL30	+	TRUE	AluSx	SINE,Alu
chr4	10443059	A	T	0.00187	ZNF518B	-	FALSE
chrX	2824916	T	C	6.31541E-06	ARSD	-	TRUE	AluSx1	SINE,Alu
chr1	16889050	A	C	0.00669	NBPF1	-	FALSE
chr1	28835847	A	G	4.14471E-06	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr2	37328082	T	C	1.18454E-08		.	FALSE
chr1	112266790	C	T	0.00892	FAM212B	-	FALSE
chr1	153591278	G	T	0.00119	S100A13	-	FALSE
chr2	198572076	A	C	0.00532	MARS2	+	FALSE
chr2	208619742	A	G	0.00500	CCNYL1	+	TRUE	AluJb	SINE,Alu
chr4	10076658	T	C	6.66134E-16	WDR1	-	FALSE
chr1	16933629	A	G	0.00310	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr1	180943529	C	T	0.00297	STX6	-	FALSE
chr2	55516911	A	G	0.00719	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr1	156084582	T	C	0.00195	LMNA	+	FALSE
chr3	72424929	A	G	0.00988	RYBP	-	FALSE
chr3	188602081	A	C	7.06828E-05	LPP	+	FALSE	MIRc	SINE,Alu
chr22	21304408	A	G	0.00967	CRKL	+	FALSE
chr3	10302056	A	G	0.00018	TATDN2	+	FALSE
chr12	125511242	A	G	0.00015	THRIL	-	FALSE	AluSx1	SINE,Alu
chr7	91502407	C	G	0.00183	MTERF1	-	FALSE
chr18	47919174	A	G	0.00820	SKA1	+	TRUE	AluYk4	SINE,Alu
chr5	125961611	A	G	0.00113	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	31905888	C	A	0.00667	SERINC2	+	FALSE
chr1	203822584	T	C	5.41257E-07	ZC3H11A	+	FALSE
chr1	145291494	A	G	0.00738	NBPF20	+	FALSE	MIRb	SINE,Alu
chr1	201350983	C	T	0.00768	LAD1	-	FALSE
chr1	65900357	G	T	0.00041	LEPR,LEPROT	+	FALSE
chr4	39550978	T	C	0.00023	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr1	1595602	A	G	9.14189E-05	CDK11B,SLC35E2B	-	FALSE	AluJr	SINE,Alu
chr1	144932199	C	A	0.00584	NBPF20,PDE4DIP	+,-	FALSE
chr3	45153708	G	A	4.36430E-08	CDCP1	-	FALSE
chr1	109746728	A	G	0.00171	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr1	169101269	T	G	0.00207	ATP1B1	+	FALSE	(T)n	SINE,Alu
chr1	16945409	T	A	0.00105	CROCCP2	-	FALSE
chr8	26492397	C	T	0.00709	DPYSL2	+	FALSE
chr2	23865260	T	C	0.00262	KLHL29	+	FALSE
chr4	2940413	T	C	0.00311	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr7	20178562	T	C	1.84789E-06	MACC1,LOC101927668	-	TRUE	AluY	SINE,Alu
chr1	180991777	T	C	0.00629	STX6	-	FALSE
chr11	118880839	A	G	0.00922	CCDC84	+	TRUE	AluJb	SINE,Alu
chr4	7761211	C	T	8.70555E-11	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	16841561	G	A	0.00025		.	FALSE
chr1	145281633	C	A	0.00059	NBPF20,NOTCH2NL	+	FALSE
chr1	10520154	T	C	0.00380		.	FALSE	AluSx	SINE,Alu
chr3	148748339	G	T	0.00666	HLTF	-	FALSE
chrM	9988	T	C	0.00011		.	FALSE
chr6	42856156	A	G	0.00105	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	10518733	T	C	0.00541		.	FALSE	AluSx1	SINE,Alu
chr1	1595540	T	C	0.00048	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr1	155695985	A	G	0.00031	DAP3	+	TRUE	AluSp	SINE,Alu
chr1	120458004	A	T	0.00247	NOTCH2	-	FALSE
chr4	40138676	A	G	0.00157	N4BP2	+	FALSE
chr1	24933701	A	G	0.00372	NCMAP	+	TRUE	AluJr	SINE,Alu
chr2	37329352	T	C	0.00403		.	FALSE	AluJr4	SINE,Alu
chr2	37075013	T	A	0.00754	STRN	-	FALSE
chr7	4809333	A	G	0.00067	FOXK1	+	TRUE	AluSx1	SINE,Alu
chr1	161338504	C	G	0.00343		.	FALSE
chr8	99053985	T	G	4.76792E-05	RPL30	-	FALSE
chr1	225706943	C	T	0.00229	ENAH	-	FALSE
chr3	10192744	A	G	3.36147E-05	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	45975269	A	G	0.00827	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr1	32373437	G	A	3.32434E-12	PTP4A2	-	FALSE
chr2	114352238	G	A	1.72390E-05	WASH2P	+	FALSE
chr1	28825427	A	G	0.00484	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr4	73923605	T	C	0.00366	COX18	-	TRUE	AluSq2	SINE,Alu
chr11	94801637	T	C	0.00726	SRSF8	+	FALSE
chr19	58374130	C	T	0.00124	ZNF587	+	FALSE

RBP	RBFOX2
Knock-Method	shRNA
RBP Family	Fox-1_C
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR767LLP
Platform	HiSeq
Pubmed ID	32252787

RBFOX2 - Target Gene Network