Dataset Overview
RBP
RBFOX2
Knock-Method
shRNA
RBP Family
Fox-1_C
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR767LLP
Platform
HiSeq
Pubmed ID
32252787
RBFOX2 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of RBFOX2
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A4GALT
0.64
1.31
1.26447
0.00086
0.02982
AAR2
9.53
5.76
-0.67141
0.00311
0.07014
AATF
20.53
27.53
0.51395
0.01830
0.19553
AB019441.29
1.98
3.11
0.88216
0.04893
0.32412
ABAT
18.3
23.2
0.43851
0.02272
0.21760
ABCA7
18.68
28.54
0.77268
0.00027
0.01303
ABCB7
13.55
10.52
-0.44180
0.04937
0.32563
ABCC3
24.36
18.0
-0.58526
0.00241
0.05864
ABCC6
21.36
15.9
-0.48665
0.02394
0.22297
ABCC6P1
41.33
24.2
-0.59108
0.00215
0.05524
Showing 1 to 10 of 1,987 entries
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Function Analysis of Target Genes of RBFOX2
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCC6
16314129_16314245_16313678_16313804_16315505_16315688
0.00879
-0.074
DataSet_01_214
View details
ABI1
27060003_27060018_27059173_27059274_27065993_27066170
0.00509
-0.042
DataSet_01_214
View details
AC003002.6
57902089_57902213_57901251_57901482_57905555_57905591
0.00695
-0.279
DataSet_01_214
View details
AC018865.8
130792251_130792404_130791882_130791950_130792706_130792835
0.00860
0.288
DataSet_01_214
View details
ACSL4
108934231_108934360_108926364_108926601_108939372_108939425
0.00714
0.035
DataSet_01_214
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ACSS2
33509765_33509906_33509450_33509669_33511125_33511234
0.00388
0.052
DataSet_01_214
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AFMID
76202026_76202131_76198783_76198832_76202991_76203782
0.00895
0.044
DataSet_01_214
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AIDA
222884720_222884887_222876489_222876559_222885549_222885605
0.00420
0.067
DataSet_01_214
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AKAP8L
15509440_15509577_15508524_15508666_15510112_15510221
0.00495
0.081
DataSet_01_214
View details
APBB2
40937093_40937156_40936630_40936716_40946881_40947090
0.00416
-0.322
DataSet_01_214
View details
Showing 1 to 10 of 146 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A1CF
52601621_52601752_52603747_52603882_52595833_52596072
0.00063
0.331
DataSet_01_214
View details
ABCC1
16149948_16150152_16162012_16162159_16146580_16146673
0.00002
0.345
DataSet_01_214
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ABCF1
30546246_30546354_30547707_30547782_30546124_30546162
0.00005
-0.077
DataSet_01_214
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ABHD12
25295560_25295606_25300834_25300954_25290081_25290211
0.00000
-0.285
DataSet_01_214
View details
AC022816.2
14280600_14280738_14285108_14285253_14277455_14277545
0.00354
-0.255
DataSet_01_214
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ACAA1
38170780_38170879_38173086_38173129_38168000_38168191
0.00858
0.079
DataSet_01_214
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ACAP3
1229781_1230008_1230097_1230196_1229469_1229579
0.00000
-0.301
DataSet_01_214
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ACLY
40024961_40025038_40025295_40025378_40024013_40024157
0.00000
-0.196
DataSet_01_214
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ACSS2
33481371_33481425_33496707_33496746_33470596_33470792
0.00171
0.095
DataSet_01_214
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ACTN4
39200896_39200982_39201915_39202001_39200034_39200116
0.00421
-0.043
DataSet_01_214
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Showing 1 to 10 of 208 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AKAP8L
15509440_15510221_15510112_15510221_15508524_15508666
0.00441
0.076
DataSet_01_214
View details
AP1G2
24036805_24036992_24036947_24036992_24036319_24036528
0.00392
-0.034
DataSet_01_214
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APEX1
20923384_20923548_20923384_20923487_20923736_20923862
0.00496
-0.067
DataSet_01_214
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CTNND1
57529268_57529591_57529268_57529518_57558856_57559145
0.00323
0.237
DataSet_01_214
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DDB2
47256820_47257051_47256820_47256963_47259387_47259552
0.00019
-0.109
DataSet_01_214
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DDX47
12976136_12976334_12976136_12976253_12976803_12976950
0.00048
-0.053
DataSet_01_214
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DHRS2
24113617_24113763_24113617_24113752_24114035_24114091
0.00121
0.017
DataSet_01_214
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ENO2
7025817_7025998_7025817_7025893_7026201_7026423
0.00377
0.083
DataSet_01_214
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ESPN
6508700_6509151_6508700_6508862_6511662_6511808
0.00629
0.123
DataSet_01_214
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FKBP10
39975781_39976301_39975781_39975927_39976520_39976713
0.00542
0.062
DataSet_01_214
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Showing 1 to 10 of 20 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AP1G2
24031170_24031394_24031170_24031275_24031496_24031624
0.00583
-0.052
DataSet_01_214
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AP1G2
24034329_24034551_24034329_24034408_24034814_24034910
0.00109
-0.199
DataSet_01_214
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ARGLU1
107209852_107210052_107209852_107209964_107211779_107212005
0.00388
0.111
DataSet_01_214
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CARS
3062125_3062261_3062125_3062214_3063394_3063486
0.00234
-0.134
DataSet_01_214
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CCDC23
43282101_43282276_43282101_43282251_43282860_43282923
0.00439
-0.053
DataSet_01_214
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CFB
31912756_31912963_31912954_31912963_31912503_31912630
0.00406
0.043
DataSet_01_214
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CLINT1
157216370_157216575_157216370_157216521_157218710_157219003
0.00504
-0.129
DataSet_01_214
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DDX39B
31508098_31508441_31508098_31508311_31509726_31510225
0.00308
-0.084
DataSet_01_214
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FN1
216236631_216237098_216236631_216237023_216238044_216238134
0.00001
-0.027
DataSet_01_214
View details
FTH1
61732458_61732617_61732458_61732577_61732840_61733001
0.00769
-0.466
DataSet_01_214
View details
Showing 1 to 10 of 37 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACADVL
7125985_7126556_7125985_7126184_7126451_7126556
0.00000
-0.139
DataSet_01_214
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APEX1
20923384_20923862_20923384_20923487_20923736_20923862
0.00332
-0.057
DataSet_01_214
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CDC37
10505903_10506219_10505903_10506019_10506110_10506219
0.00001
0.107
DataSet_01_214
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CPSF7
61183137_61183991_61183137_61183256_61183576_61183991
0.00140
0.102
DataSet_01_214
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EIF2B5
183860839_183862012_183860839_183861353_183861886_183862012
0.00682
0.114
DataSet_01_214
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ENO2
7025834_7026271_7025834_7025893_7026201_7026271
0.00474
0.09
DataSet_01_214
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EPS8L2
721115_721352_721115_721206_721284_721352
0.00146
-0.051
DataSet_01_214
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ERBB3
56492283_56492689_56492283_56492359_56492542_56492689
0.00167
-0.029
DataSet_01_214
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FTH1
61734783_61735103_61734783_61734843_61734929_61735103
0.00000
0.108
DataSet_01_214
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GPS2
7217806_7218438_7217806_7217916_7218277_7218438
0.00627
0.064
DataSet_01_214
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
9162224
T
C
0.00523
.
FALSE
AluSx
SINE,Alu
chr1
145586403
G
T
0.00075
NBPF20,NBPF10,PIAS3
+
FALSE
chr1
101444071
G
A
0.00963
SLC30A7
+
FALSE
MIR3
SINE,Alu
chr1
32742441
G
A
2.50972E-10
LCK
+
FALSE
chr1
16576295
G
A
0.00139
FBXO42
-
FALSE
A-rich
SINE,Alu
chr1
36024788
C
T
5.60663E-14
NCDN
+
FALSE
chr1
36602178
A
T
0.00764
TRAPPC3
-
FALSE
chr1
160967890
T
C
0.00876
F11R
-
TRUE
AluSp
SINE,Alu
chr1
38280010
C
T
0.00393
MTF1
-
FALSE
chr1
207247477
T
C
2.68116E-05
PFKFB2
+
FALSE
MER5B
SINE,Alu
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression