RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr12	123253711	A	G	0.00066	DENR	+	TRUE	(AT)n	SINE,Alu
chr2	64687777	G	T	7.38315E-07	LGALSL	+	FALSE
chr6	28873868	T	C	0.00041		.	FALSE	AluJo	SINE,Alu
chr2	37506939	A	G	0.00119	PRKD3	-	FALSE
chr2	128601556	T	C	3.22117E-06		.	FALSE	AluJr	SINE,Alu
chr6	108364582	T	C	0.00577	OSTM1	-	FALSE
chr1	93599279	G	A	0.00849	MTF2	+	FALSE
chr4	106767318	A	G	1.71247E-06	GSTCD	+	TRUE	AluJb	SINE,Alu
chr1	144922523	C	T	0.00566	NBPF20,PDE4DIP	+,-	FALSE
chr1	100658578	G	A	0.00030	DBT	-	FALSE
chr19	39433140	G	T	0.00260	FBXO17	-	FALSE	AluJb	SINE,Alu
chr1	235392546	T	C	0.00312	ARID4B	-	FALSE
chr8	146016990	C	T	0.00027	RPL8	-	FALSE
chr15	90815820	A	G	0.00171		.	FALSE	FRAM	SINE,Alu
chr14	69254646	T	C	0.00181	ZFP36L1	-	FALSE
chr4	53463566	C	T	5.12751E-05	USP46	-	FALSE
chr5	25415881	T	C	0.00911		.	FALSE
chr5	77655342	T	C	0.00919	SCAMP1-AS1	-	TRUE	AluSx4	SINE,Alu
chr5	37290400	T	C	0.00282		.	FALSE	AluSz	SINE,Alu
chr19	56090351	C	T	1.52943E-09	ZNF579	-	FALSE
chr1	6283296	T	C	0.00225	ICMT	-	TRUE	AluSx3	SINE,Alu
chr4	128757345	A	G	0.00040		.	FALSE	AluY	SINE,Alu
chr2	101893244	C	A	0.00332	RNF149	-	FALSE	(A)n	SINE,Alu
chr1	10366487	T	G	0.00187	KIF1B	+	FALSE
chr16	74734743	G	C	0.00436	MLKL	-	FALSE
chr1	145688664	A	T	0.00081	NBPF20,NBPF10,RNF115	+	FALSE
chr2	37328087	T	C	0.00335		.	FALSE
chr1	220231263	T	C	0.00300	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr1	92147985	C	A	0.00370	TGFBR3	-	FALSE
chr1	145511988	A	G	0.00965	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	79108421	A	T	7.77428E-05	IFI44L	+	FALSE
chr2	1652354	G	A	0.00000	PXDN	-	FALSE
chr1	10517485	T	C	0.00260		.	FALSE	AluSx1	SINE,Alu
chr2	20648961	T	C	0.00304	RHOB	+	FALSE
chr4	89181431	T	C	5.21801E-05	PPM1K	-	TRUE	AluSx1	SINE,Alu
chr1	6283439	T	C	0.00786	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	33148698	A	G	0.00736	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	17313654	C	T	0.00714	ATP13A2	-	FALSE
chr5	53181731	C	T	0.00707	ARL15	-	FALSE
chr1	52817432	T	C	0.00518	CC2D1B	-	TRUE	AluSg4	SINE,Alu
chr1	155214017	C	A	0.00261	GBA	-	FALSE	AluSx3	SINE,Alu
chr1	26138325	G	A	0.00027	SEPN1	+	FALSE
chr4	165998694	T	C	0.00041	TMEM192	-	TRUE	AluSg	SINE,Alu
chr1	10519932	T	C	0.00710		.	FALSE	AluJr	SINE,Alu
chr1	16889339	C	T	0.00129	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr1	10519912	T	C	0.00750		.	FALSE	AluJr	SINE,Alu
chr9	115447518	T	C	0.00084	INIP	-	TRUE	AluJb	SINE,Alu
chr1	23689522	G	T	0.00570	ZNF436	-	FALSE
chr3	10193743	T	C	0.00456	VHL	+	FALSE	AluJr	SINE,Alu
chr3	15112630	C	T	0.00017	RBSN	-	FALSE	AluSq2	SINE,Alu
chr17	65334967	T	C	0.00045	PSMD12	-	TRUE	AluSq	SINE,Alu
chr5	79923361	T	C	0.00050	DHFR	-	TRUE	AluJr	SINE,Alu
chr1	197477932	C	T	0.00488	DENND1B	-	FALSE
chr1	54692341	T	C	0.00045	SSBP3	-	FALSE	(T)n	SINE,Alu
chr1	3731965	G	A	0.00209	CEP104	-	FALSE
chr1	200522059	A	T	0.00163	KIF14	-	FALSE	AluSg	SINE,Alu
chr5	125961079	A	G	0.00258	PHAX	+	TRUE	AluSz	SINE,Alu
chr7	129472333	C	T	0.00670	UBE2H	-	FALSE	(CA)n	SINE,Alu
chr1	16133987	T	C	0.00830	UQCRHL	-	FALSE
chr14	50792966	A	T	0.00852		.	FALSE	AluSx	SINE,Alu
chr1	16927419	G	A	0.00493	NBPF1	-	FALSE
chr1	59123655	C	T	0.00655	MYSM1	-	FALSE
chr7	44841239	T	A	0.00199	PPIA	+	FALSE
chr2	208466270	A	G	0.00713	CREB1,METTL21A	+,-	FALSE
chr5	14510071	G	T	0.00130	TRIO	+	FALSE
chr6	31236900	G	A	0.00167		.	FALSE
chr1	226171400	T	C	0.00359	SDE2	-	TRUE	BC200	SINE,Alu
chr12	125511961	A	G	1.08093E-06	THRIL	-	FALSE	AluSx1	SINE,Alu
chr2	24224040	A	G	0.00882		.	FALSE	AluSp	SINE,Alu
chr1	90401562	C	A	0.00057	LRRC8D	+	FALSE
chr8	145159713	G	C	0.00137	MAF1	+	FALSE
chr7	66421684	T	G	0.00042	TMEM248	+	FALSE	AluJr	SINE,Alu
chr3	45722396	A	G	0.00231	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr3	45266555	T	C	1.22536E-07	TMEM158	-	FALSE
chr1	158065762	C	T	0.00310	KIRREL	+	FALSE
chr1	70718276	G	T	0.00493		.	FALSE
chr14	65400786	T	G	0.00077	CHURC1-FNTB,CHURC1	+	FALSE	AluSx	SINE,Alu
chr3	196670092	C	G	0.00393	NCBP2-AS2	+	FALSE
chr2	61277776	A	G	0.00178	PEX13	+	TRUE	AluY	SINE,Alu
chr8	141461185	A	G	0.00793	TRAPPC9	-	FALSE
chr1	114940211	G	T	8.00129E-05	TRIM33	-	FALSE	(T)n	SINE,Alu
chr11	8708789	A	G	0.00237	RPL27A	+	TRUE	AluSp	SINE,Alu
chr1	16932368	T	A	0.00336	NBPF1	-	FALSE	MLT1F-int	SINE,Alu
chr17	26672363	G	A	0.00599	TNFAIP1	+	FALSE
chr1	144596317	C	T	0.00020	NBPF20	+	FALSE	AluJb	SINE,Alu
chr1	156499969	T	C	8.53229E-06	IQGAP3	-	FALSE
chr1	20978294	T	A	0.00985	PINK1-AS,DDOST	-	FALSE
chr3	193385047	C	T	0.00259	OPA1	+	FALSE
chr1	1361641	C	T	0.00928	TMEM88B	+	FALSE
chr1	13936953	C	T	0.00515	PDPN	+	FALSE
chr10	75008876	T	C	0.00255	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr1	10043363	A	G	0.00429	NMNAT1	+	TRUE	AluSx3	SINE,Alu
chr1	3730400	T	C	0.00894	CEP104	-	TRUE	AluSx3	SINE,Alu
chr12	98942644	A	G	0.00133	TMPO	+	TRUE	AluSc	SINE,Alu
chr5	125962354	A	G	3.71532E-05	PHAX	+	TRUE	AluSc	SINE,Alu
chr2	178084651	A	G	1.09207E-09	HNRNPA3	+	FALSE
chr1	171561203	T	G	0.00119	PRRC2C	+	FALSE
chr16	88789699	A	C	0.00936	PIEZO1	-	FALSE
chr2	206987629	T	C	0.00208		.	FALSE	AluJb	SINE,Alu
chr17	8286136	T	A	0.00706	RPL26	-	FALSE
chr1	204520442	A	G	7.81381E-05	MDM4	+	TRUE	AluJb	SINE,Alu
chr12	32532499	A	T	0.00119		.	FALSE
chr1	19578192	G	A	0.00778	MRTO4	+	FALSE
chr1	16953672	C	T	0.00243	CROCCP2	-	FALSE
chr3	172350135	A	T	9.93187E-07	NCEH1	-	FALSE
chr5	122165482	C	T	0.00367	SNX2	+	FALSE	(AC)n	SINE,Alu
chr1	36602178	A	T	0.00764	TRAPPC3	-	FALSE
chr6	31379931	G	A	0.00093		.	FALSE
chr1	101442570	A	T	0.00377	SLC30A7	+	FALSE
chr16	48386442	A	G	0.00964	LONP2,MIR5095	+	TRUE	AluSz6	SINE,Alu
chr1	120612168	C	T	0.00607	NOTCH2	-	FALSE
chr3	15113799	T	C	0.00200	RBSN	-	TRUE	AluSz6	SINE,Alu
chr5	56559238	T	C	0.00149	GPBP1	+	FALSE
chr1	201355943	C	T	0.00355	LAD1	-	FALSE
chr1	148753279	G	T	0.00358		.	FALSE
chr1	32631809	C	T	1.50957E-07	KPNA6	+	FALSE
chr1	145283718	G	A	0.00989	NBPF20,NOTCH2NL	+	FALSE
chr17	61897188	G	T	0.00465	FTSJ3	-	FALSE
chr1	1001422	G	T	0.00998		.	FALSE	LTR13A	SINE,Alu
chr19	42376872	A	G	0.00647		.	FALSE	AluSp	SINE,Alu
chr16	84778690	C	T	0.00799	USP10	+	FALSE
chr1	19585553	A	G	0.00039	MRTO4	+	TRUE	AluSc8	SINE,Alu
chr2	37327590	T	C	0.00364		.	FALSE
chr2	99812464	A	G	0.00998	MRPL30	+	TRUE	AluSx	SINE,Alu
chr4	17803537	T	C	0.00366	DCAF16	-	TRUE	AluY	SINE,Alu
chr2	114352238	G	A	8.42668E-06	WASH2P	+	FALSE
chr3	72424929	A	G	0.00988	RYBP	-	FALSE
chr6	111348022	A	T	2.41155E-06	RPF2	+	FALSE
chr3	42594019	C	T	3.51223E-05	SEC22C	-	FALSE
chr12	69237042	A	G	0.00413	MDM2	+	TRUE
chr2	37327662	T	C	9.50751E-10		.	FALSE
chr10	124913908	C	A	0.00784	BUB3	+	FALSE
chr2	105962339	G	A	0.00079	C2orf49	+	FALSE	AluSp	SINE,Alu
chr1	38326661	T	C	0.00023	INPP5B	-	TRUE	AluJr	SINE,Alu
chr10	51612914	T	C	0.00063	TIMM23B,TIMM23	+,-	FALSE
chr2	187544223	T	G	0.00254	ITGAV	+	FALSE
chr1	19543352	T	C	0.00087	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr5	130537933	A	G	0.00084	LYRM7	+	TRUE	AluSp	SINE,Alu
chr6	42856978	A	G	0.00819	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr1	3371371	C	G	0.00367	ARHGEF16	+	FALSE
chr1	20976163	C	T	0.00091	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr1	36534086	A	G	0.00157		.	FALSE	FLAM_A	SINE,Alu
chr1	45187511	T	C	7.71832E-06	C1orf228	+	FALSE	U5	SINE,Alu
chr1	3548832	G	C	0.00051	WRAP73	-	FALSE
chr1	121133779	C	G	0.00567	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	L1MB4	SINE,Alu
chr19	57804362	G	A	0.00191	ZNF460	+	FALSE
chr10	23408278	C	T	0.00042	MSRB2	+	FALSE
chr1	40537940	A	C	0.00155	CAP1	+	FALSE	(A)n	SINE,Alu
chr3	23962339	T	A	0.00925	RPL15	+	FALSE
chr5	118729619	A	G	0.00586	TNFAIP8	+	FALSE
chr15	41573612	C	A	0.00355	CHP1	+	FALSE
chr3	39138082	C	T	8.26379E-05	WDR48	+	FALSE
chr2	37328100	T	C	0.00027		.	FALSE
chr1	6582701	T	C	1.54245E-05	NOL9	-	TRUE	AluSg	SINE,Alu
chr10	124815149	C	G	0.00993	ACADSB	+	FALSE	THE1A-int	SINE,Alu
chr1	36806071	G	A	0.00126	STK40	-	FALSE
chr1	19954014	G	T	0.00055	MINOS1,MINOS1-NBL1	+	FALSE	L2c	SINE,Alu
chr8	42883403	A	G	0.00204	HOOK3	+	TRUE	AluJb	SINE,Alu
chr1	16952481	A	G	0.00093	CROCCP2	-	FALSE
chr2	37075013	T	A	0.00119	STRN	-	FALSE
chr3	156258319	T	C	0.00909	SSR3	-	TRUE	AluYk3	SINE,Alu
chr4	101946461	G	T	0.00442	PPP3CA	-	FALSE	(T)n	SINE,Alu
chr1	25890189	A	G	0.00961	LDLRAP1	+	FALSE
chr1	63881552	C	T	0.00021	ALG6	+	FALSE
chr4	109733172	T	C	0.00480	COL25A1	-	FALSE
chr7	44047240	G	A	0.00588	POLR2J4,SPDYE1	+,-	FALSE
chr7	137612915	G	A	0.00057	CREB3L2	-	FALSE
chr7	6442892	C	A	0.00675	RAC1	+	FALSE
chr7	102089261	A	G	0.00028	ORAI2	+	TRUE	AluSq2	SINE,Alu
chrX	77083955	T	C	0.00065	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	36068184	T	C	0.00150	PSMB2	-	TRUE	AluSc	SINE,Alu
chr16	10623639	T	C	0.00392	EMP2	-	TRUE	AluSp	SINE,Alu
chr3	88103602	C	A	0.00284	CGGBP1	-	FALSE
chr1	33149495	A	G	0.00421	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	169101273	T	G	0.00522	ATP1B1	+	FALSE	(T)n	SINE,Alu
chr5	68505909	A	G	0.00178	CENPH	+	TRUE	AluSx3	SINE,Alu
chr2	113287424	T	A	0.00616	TTL	+	FALSE
chr2	55452459	G	T	5.59903E-07	CLHC1	-	FALSE
chr1	168218671	A	G	0.00974		.	FALSE	AluSz	SINE,Alu
chr1	144594373	C	G	0.00715	NBPF20	+	FALSE
chr1	10520669	T	C	0.00022	DFFA	-	FALSE	AluSc8	SINE,Alu
chr1	201846635	A	T	0.00293	IPO9	+	FALSE	(CA)n	SINE,Alu
chr3	99517485	C	A	0.00088	MIR548G	-	FALSE	(TG)n	SINE,Alu
chr2	10567337	G	C	0.00940	HPCAL1	+	FALSE
chr5	137891109	C	G	0.00031	HSPA9	-	FALSE
chr3	45960556	C	T	0.00500	FYCO1	-	FALSE
chr1	22400707	C	G	0.00158	CDC42	+	FALSE	AluSc8	SINE,Alu
chr7	6501819	A	T	0.00037	KDELR2	-	FALSE
chr4	7060935	G	C	0.00543	GRPEL1	-	FALSE	Tigger4a	SINE,Alu
chr12	27953267	T	G	0.00233	KLHL42	+	FALSE
chr2	203742126	T	C	0.00451		.	FALSE	AluJb	SINE,Alu
chr1	1421531	C	A	0.00409	ATAD3B	+	FALSE
chr1	46751319	G	A	0.00085	LRRC41	-	FALSE
chr1	38326774	T	C	0.00664	INPP5B	-	TRUE	AluJr	SINE,Alu
chr1	10520174	T	C	0.00163		.	FALSE	AluSx	SINE,Alu
chr2	201774342	T	C	0.00127		.	FALSE	AluSz	SINE,Alu
chr17	5288084	T	A	0.00232	RABEP1	+	FALSE
chr19	42375627	A	G	0.00058		.	FALSE	AluSx	SINE,Alu
chr1	229736656	G	C	0.00793	TAF5L	-	FALSE
chr1	204189357	C	T	0.00835	PLEKHA6	-	FALSE
chr4	57326917	A	G	5.41162E-06	PAICS	+	TRUE	AluSx1	SINE,Alu
chr8	48890293	A	G	0.00125	MCM4	+	TRUE	AluJb	SINE,Alu
chr1	148004548	T	C	0.00220	NBPF8	-	FALSE
chr1	117117182	C	T	0.00270	IGSF3	-	FALSE
chr19	16661541	T	C	0.00120	SLC35E1	-	TRUE	AluSz	SINE,Alu
chr5	125961573	A	G	0.00217	PHAX	+	TRUE	AluSz6	SINE,Alu
chr5	37290323	T	C	8.21848E-08		.	FALSE	AluSz	SINE,Alu
chr3	195411498	G	A	0.00722	SDHAP2	+	FALSE
chr1	36068369	T	C	0.00404	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	46076642	A	G	0.00552	NASP	+	TRUE	AluSx	SINE,Alu
chr14	53243434	T	C	5.94655E-10	GNPNAT1	-	TRUE	AluSx3	SINE,Alu

RBP	KIF1C
Knock-Method	shRNA
RBP Family	Non-canonical_RBP
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR823WTA
Platform	HiSeq
Pubmed ID	32252787

KIF1C - Target Gene Network