RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	231398555	A	G	0.00401	GNPAT	+	FALSE
chr1	1662754	T	C	0.00856	SLC35E2	-	TRUE	AluY	SINE,Alu
chr7	44841239	T	A	0.00199	PPIA	+	FALSE
chr1	19543465	T	C	0.00117	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	25812110	T	C	0.00639	TMEM57	+	FALSE
chr5	150827307	G	T	0.00708	SLC36A1	+	FALSE
chr1	35648710	G	C	0.00377	SFPQ	-	FALSE
chr2	120439459	C	A	0.00273	TMEM177	+	FALSE
chr6	52860743	T	G	1.01575E-05		.	FALSE	7SK	SINE,Alu
chr3	15113736	T	C	0.00641	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	31342611	A	C	0.00145	SDC3	-	FALSE
chr3	33138549	G	A	0.00612	GLB1	-	FALSE
chr1	118066459	A	G	1.18472E-05	MAN1A2	+	FALSE
chr2	86979093	G	A	0.00591	RMND5A	+	FALSE
chr2	206986926	T	C	0.00913		.	FALSE	AluJr	SINE,Alu
chr1	152884247	A	G	0.00642	IVL	+	FALSE
chr1	6282301	T	C	0.00480	ICMT	-	TRUE	AluSz	SINE,Alu
chr2	11674374	A	G	0.00559	GREB1	+	FALSE	Tigger9b	SINE,Alu
chr1	46828700	A	G	0.00012	NSUN4	+	FALSE
chr1	28826023	A	G	0.00342	PHACTR4	+	FALSE	AluJb	SINE,Alu
chr6	43582795	A	G	0.00087	POLH	+	TRUE	AluSx1	SINE,Alu
chr1	6683582	C	A	0.00152	PHF13	+	FALSE
chr1	28662057	A	G	3.94650E-05	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	148561089	T	C	0.00975	NBPF15	+	FALSE
chr12	69237056	A	G	0.00372	MDM2	+	TRUE
chr1	100490000	A	G	0.00066	SLC35A3	+	TRUE	AluSg	SINE,Alu
chr1	53711218	A	T	0.00838	LRP8	-	FALSE
chr2	110373938	T	G	0.00413	SOWAHC	+	FALSE	(GAAT)n	SINE,Alu
chr19	42375584	A	G	0.00021		.	FALSE	AluSx	SINE,Alu
chr1	38174583	A	C	0.00644	CDCA8	+	FALSE
chr1	10519048	T	C	0.00089		.	FALSE	AluSx3	SINE,Alu
chr1	204521576	A	G	0.00021	MDM4	+	TRUE	AluSg	SINE,Alu
chr3	44487862	G	A	0.00262	ZNF445	-	FALSE
chr1	10520692	T	C	0.00973	DFFA	-	TRUE	AluSc8	SINE,Alu
chr3	156259229	T	C	0.00225	SSR3	-	TRUE	AluSq2	SINE,Alu
chr2	37431485	A	G	0.00339	CEBPZOS,CEBPZ	+,-	FALSE	AluSc	SINE,Alu
chr14	23795204	G	T	0.00938	BCL2L2-PABPN1,PABPN1	+	FALSE
chr2	102484490	G	T	0.00635	MAP4K4	+	FALSE
chr1	24999101	G	T	0.00100	SRRM1	+	FALSE
chr2	238499528	T	G	0.00332	RAB17	-	FALSE
chr1	168169452	G	A	0.00600	TIPRL	+	FALSE
chr2	131131424	G	C	0.00845	PTPN18	+	FALSE
chr19	18475356	A	G	0.00360	PGPEP1	+	TRUE	AluSx1	SINE,Alu
chr14	21929014	T	C	0.00749	RAB2B	-	TRUE	AluSp	SINE,Alu
chr4	57801196	G	A	0.00485	REST	+	FALSE
chr1	183515428	G	A	0.00232	SMG7	+	FALSE
chr1	22419433	T	G	0.00200	CDC42	+	FALSE
chr2	178406765	T	A	0.00325	AGPS	+	FALSE
chr15	102512797	A	G	0.00080	WASH3P	+	FALSE
chr1	19543247	T	C	5.35430E-06	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	79110518	A	G	0.00997	IFI44L	+	FALSE
chr1	95658344	G	A	0.00100	TMEM56-RWDD3,LOC101928118,TMEM56	+,-	FALSE
chr17	80899281	G	A	0.00053	TBCD	+	FALSE
chr4	119553307	T	C	0.00096	LOC729218	+	FALSE
chr10	33189606	A	G	0.00011	ITGB1	-	FALSE
chr7	56079033	T	C	0.00300	PSPH	-	TRUE	AluYm1	SINE,Alu
chr8	143739343	T	C	0.00999	JRK	-	FALSE
chr1	31905889	A	G	0.00565	SERINC2	+	FALSE
chr1	117945049	G	A	0.00030	MAN1A2	+	FALSE
chr2	105881071	C	A	0.00851	TGFBRAP1	-	FALSE
chr4	186081819	C	T	3.85218E-06	CFAP97	-	FALSE
chr9	14810	C	G	0.00709	WASH1	-	FALSE
chr1	118502732	C	T	0.00151	WDR3,SPAG17	+,-	FALSE
chr5	178508569	C	T	0.00571	ZNF354C	+	FALSE
chr1	16891333	C	T	0.00011	NBPF1	-	FALSE
chr1	36067749	T	C	0.00748	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	16945504	C	T	0.00665	CROCCP2	-	FALSE
chr1	10520099	T	C	6.30717E-05		.	FALSE	AluSx	SINE,Alu
chr6	160100882	T	C	0.00494	SOD2	-	TRUE	AluSz	SINE,Alu
chr1	3730400	T	C	0.00584	CEP104	-	TRUE	AluSx3	SINE,Alu
chr7	32529936	G	C	0.00027	LSM5	-	FALSE
chr1	16892277	G	T	0.00164	NBPF1	-	FALSE
chr1	113672691	A	G	0.00515		.	FALSE	AluJb	SINE,Alu
chr5	149364144	A	G	0.00014	SLC26A2	+	TRUE	AluSc8	SINE,Alu
chr1	109180686	C	T	1.31584E-05	FAM102B	+	FALSE
chr1	10520684	T	C	0.00842	DFFA	-	TRUE	AluSc8	SINE,Alu
chr5	40832555	A	T	5.95918E-06	RPL37	-	FALSE
chr2	26613948	A	G	0.00218	EPT1	+	FALSE
chr12	98943192	A	G	0.00011	TMPO	+	FALSE	AluSz	SINE,Alu
chr2	37330435	T	C	3.14905E-06		.	FALSE	AluSq2	SINE,Alu
chr1	53291344	A	G	0.00088	ZYG11B	+	FALSE	(A)n	SINE,Alu
chr16	10623553	T	C	0.00024	EMP2	-	TRUE	AluSp	SINE,Alu
chr1	109967950	T	A	0.00096	PSMA5	-	FALSE
chr5	125961816	A	G	0.00013	PHAX	+	TRUE	FLAM_C	SINE,Alu
chr6	42060429	T	C	0.00017		.	FALSE	AluSz6	SINE,Alu
chr1	145369556	A	G	0.00373	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr2	203744658	T	C	0.00112		.	FALSE	AluSx1	SINE,Alu
chr1	200521412	G	A	0.00110	KIF14	-	FALSE
chr1	10221302	G	A	0.00119	UBE4B	+	FALSE
chr4	103809328	G	T	0.00284	CISD2,SLC9B1	+,-	FALSE
chr1	38327545	T	C	0.00602	INPP5B	-	TRUE	AluSx3	SINE,Alu
chr1	32799508	A	C	8.53764E-05	MARCKSL1	-	FALSE
chr1	207943325	A	G	0.00158	CD46	+	TRUE	AluSx1	SINE,Alu
chr2	37330517	T	C	0.00324		.	FALSE	AluSq2	SINE,Alu
chr2	39212565	T	G	0.00662	SOS1	-	FALSE
chr1	28662254	A	G	0.00290	MED18	+	TRUE	AluSq2	SINE,Alu
chr2	174090338	A	C	0.00250	ZAK,MLK7-AS1	+,-	FALSE	AluSx	SINE,Alu
chr8	143763622	C	T	0.00470	PSCA	+	FALSE
chr12	56815652	C	T	1.92663E-05	TIMELESS	-	FALSE
chr10	121588038	A	C	0.00100	INPP5F	+	FALSE
chr3	75475670	A	C	0.00506	FAM86DP	-	FALSE
chr1	1337841	C	A	0.00186	MRPL20	-	FALSE
chr1	31345785	T	A	0.00962	SDC3	-	FALSE
chr1	900720	A	T	0.00065	KLHL17	+	FALSE	(TTTA)n	SINE,Alu
chr19	24104040	A	G	0.00476	ZNF726	+	TRUE	AluSg4	SINE,Alu
chr5	134086670	C	A	0.00585	CAMLG	+	FALSE
chr1	114226255	G	A	0.00381	MAGI3	+	FALSE
chr2	37330507	T	C	9.86666E-05		.	FALSE	AluSq2	SINE,Alu
chr7	102277600	T	C	0.00240	POLR2J2,UPK3BL	-	TRUE	AluSc	SINE,Alu
chr2	128604232	A	T	0.00652	POLR2D	-	FALSE
chr7	7283569	G	A	0.00032	C1GALT1	+	FALSE	(AT)n	SINE,Alu
chr1	211918115	C	T	7.42155E-06	LPGAT1	-	FALSE	MER63D	SINE,Alu
chr2	203744240	T	C	0.00595		.	FALSE	AluSx	SINE,Alu
chr1	1477244	T	C	0.00365	SSU72	-	FALSE
chr1	19585493	A	G	3.52757E-05	MRTO4	+	TRUE	AluSc8	SINE,Alu
chr1	52520867	T	A	7.48778E-05	TXNDC12	-	FALSE
chr15	33064148	T	C	1.59288E-05	FMN1	-	FALSE
chr1	95362514	G	T	0.00279	CNN3	-	FALSE
chr1	165877575	A	C	0.00675	UCK2	+	FALSE
chr1	26755643	A	G	0.00068	LIN28A	+	FALSE	AluSc	SINE,Alu
chr1	1419888	A	G	0.00630	ATAD3B	+	TRUE	AluSp	SINE,Alu
chr3	128215735	G	A	0.00734	GATA2-AS1	+	FALSE
chr2	24223159	A	G	0.00717	UBXN2A	+	TRUE	AluSc	SINE,Alu
chr1	53291420	A	G	0.00011	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr8	42882287	A	G	0.00771	HOOK3	+	TRUE	AluSx1	SINE,Alu
chr2	36777209	T	C	0.00299	CRIM1	+	FALSE	(TG)n	SINE,Alu
chr1	144521099	A	G	0.00049	NBPF20	+	FALSE
chr1	28826118	A	G	0.00948	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	6477671	G	T	0.00620	HES2	-	FALSE	AluSx	SINE,Alu
chr1	51822219	G	A	0.00223	EPS15	-	FALSE
chr4	17629434	A	G	0.00661		.	FALSE	AluSx3	SINE,Alu
chr1	109192051	T	C	0.00124	HENMT1	-	TRUE	AluJr	SINE,Alu
chr12	69237021	A	G	0.00229	MDM2	+	TRUE
chr1	17326540	G	A	0.00120	ATP13A2	-	FALSE
chr1	16890484	G	C	0.00704	NBPF1	-	FALSE
chr17	65334766	T	C	4.45484E-05	PSMD12	-	TRUE	AluSq	SINE,Alu
chr5	159520661	T	C	0.00776	PWWP2A	-	FALSE
chr12	125512507	A	G	0.00276		.	FALSE	AluY	SINE,Alu
chr1	10520117	T	C	0.00188		.	FALSE	AluSx	SINE,Alu
chr1	153907287	G	C	0.00122	DENND4B	-	FALSE	(CTG)n	SINE,Alu
chr2	158636910	G	A	0.00160	ACVR1	-	FALSE
chr1	3745924	G	A	0.00612	CEP104	-	FALSE
chr1	93826611	C	G	0.00072	DR1	+	FALSE
chr1	1595077	T	C	0.00031	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr4	10442610	T	C	0.00174	ZNF518B	-	FALSE
chr15	90820068	A	G	0.00194		.	FALSE	AluY	SINE,Alu
chr1	25894462	A	G	0.00101	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr1	204521625	A	G	0.00808	MDM4	+	TRUE	AluSg	SINE,Alu
chr17	49041897	T	C	4.67707E-06	SPAG9	-	TRUE	AluSx	SINE,Alu
chr15	63356574	G	A	0.00845	TPM1	+	FALSE
chr1	19543456	T	C	0.00386	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	46159809	T	A	0.00605	TMEM69	+	FALSE
chr1	150937771	T	A	0.00026	CERS2	-	FALSE	(ATTTTTT)n	SINE,Alu
chr6	150047430	T	C	0.00568	NUP43	-	TRUE	AluSc	SINE,Alu
chr1	1717473	A	C	0.00925	GNB1	-	FALSE
chr1	32638096	C	T	0.00857	KPNA6	+	FALSE
chr1	155161736	G	A	0.00088	MUC1	-	FALSE
chr1	214529320	T	G	0.00365	PTPN14	-	FALSE	AluJb	SINE,Alu
chr20	18468404	T	C	0.00301	RBBP9	-	TRUE	AluSz6	SINE,Alu
chr6	52860743	T	G	1.89710E-05		.	FALSE	7SK	SINE,Alu
chr4	3770069	G	C	0.00018	ADRA2C	+	FALSE
chr19	42375624	A	G	0.00339		.	FALSE	AluSx	SINE,Alu
chr1	28661576	A	G	0.00625	MED18	+	TRUE	AluSg	SINE,Alu
chr1	118068558	G	A	0.00876		.	FALSE
chr11	63394018	C	A	0.00103	ATL3	-	FALSE
chr1	143398850	G	T	0.00639		.	FALSE
chr1	185014720	A	G	0.00989	RNF2	+	FALSE
chr5	180682604	A	T	0.00037	CTC-338M12.4	+	FALSE
chr4	39552022	T	C	0.00015	UGDH-AS1,SMIM14	+,-	FALSE	AluSx	SINE,Alu
chr11	8707397	T	A	0.00046	RPL27A	+	FALSE
chr1	19984098	C	G	0.00826	MINOS1-NBL1,NBL1	+	FALSE
chr3	49396751	T	C	0.00311	RHOA	-	FALSE
chr1	14150116	C	T	7.82303E-05	PRDM2	+	FALSE
chr1	16933327	C	T	6.62916E-05	NBPF1	-	FALSE
chr1	241795525	A	G	0.00165	OPN3,CHML	-	FALSE	THE1B	SINE,Alu
chr1	6683581	A	C	0.00189	PHF13	+	FALSE
chr1	112003957	G	A	0.01000	ATP5F1	+	FALSE	Helitron2Na_Mam	SINE,Alu
chr4	6689813	C	A	0.00141		.	FALSE	L2b	SINE,Alu
chr1	168218735	A	G	0.00924		.	FALSE	AluSz	SINE,Alu
chr1	32637063	C	T	0.00071	KPNA6	+	FALSE
chrX	123046290	A	G	0.00524	XIAP	+	TRUE	AluJb	SINE,Alu
chr3	15112630	C	T	0.00017	RBSN	-	FALSE	AluSq2	SINE,Alu
chr1	180991776	C	A	0.00664	STX6	-	FALSE
chr1	15668319	G	A	0.00489	FHAD1	+	FALSE
chr4	22404391	G	A	0.00338	ADGRA3	-	FALSE
chr1	19542463	T	C	0.00746	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	32661578	C	T	0.00623	TXLNA	+	FALSE	(T)n	SINE,Alu
chr15	42860107	A	G	0.00194	HAUS2	+	TRUE	AluSg	SINE,Alu
chr4	17803545	T	C	0.00710	DCAF16	-	TRUE	AluY	SINE,Alu
chr4	57326291	A	G	0.00279	PAICS	+	TRUE	AluJr	SINE,Alu
chr1	160966301	T	C	8.33949E-06	F11R	-	TRUE	AluSg	SINE,Alu
chr3	183534913	A	G	0.00367	MAP6D1	-	FALSE
chr4	177249593	T	G	0.00038	SPCS3	+	FALSE	(T)n	SINE,Alu
chr1	40705200	G	A	3.20116E-08	RLF	+	FALSE
chr1	23519110	G	A	0.00268	HTR1D	-	FALSE	AluSc	SINE,Alu
chr1	10520219	T	C	0.00201		.	FALSE	AluSx	SINE,Alu
chr16	10623545	T	C	0.00142	EMP2	-	TRUE	AluSp	SINE,Alu
chr10	104417853	T	A	0.00393	TRIM8	+	FALSE	(AAT)n	SINE,Alu
chr19	36033460	C	T	0.00622	GAPDHS,TMEM147-AS1	+,-	FALSE
chr1	2160436	C	T	0.00488	SKI	+	FALSE	(CGC)n	SINE,Alu
chr2	86731654	G	A	0.00931	CHMP3,RNF103-CHMP3	-	FALSE	AluJr	SINE,Alu
chr6	42857179	C	A	0.00492	RPL7L1	+	FALSE	AluSp	SINE,Alu
chr3	5026729	C	T	0.00539	BHLHE40	+	FALSE
chr3	15456307	T	C	0.00939	METTL6	-	TRUE	AluJr	SINE,Alu
chr1	65898263	A	G	0.00767	LEPR,LEPROT	+	FALSE	MIRc	SINE,Alu
chr1	40229368	A	G	0.00154	BMP8B,PPIE	+,-	FALSE
chrM	8859	G	A	0.00929		.	FALSE
chr1	19953120	G	A	0.00212	MINOS1,MINOS1-NBL1	+	FALSE
chr1	148558269	A	G	0.00538	NBPF15	+	FALSE	AluJb	SINE,Alu
chr4	165998019	T	C	0.00849	TMEM192	-	TRUE	AluSx	SINE,Alu
chr1	16890607	G	A	0.00869	NBPF1	-	FALSE
chr5	149823791	G	T	0.00480		.	FALSE
chr1	53289759	A	G	0.00060	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr1	569874	C	T	0.00076		.	FALSE
chr11	8707396	C	A	0.00081	RPL27A	+	FALSE
chr3	48787118	T	C	0.00359	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr1	10517276	T	C	0.00079		.	FALSE	AluJr	SINE,Alu
chr19	7084638	A	G	0.00508	ZNF557	+	TRUE	AluJb	SINE,Alu
chr2	10076828	A	G	0.00026		.	FALSE	AluJr	SINE,Alu
chr1	145292925	C	T	0.00817	NBPF20	+	FALSE
chr3	196082911	T	C	0.00250	UBXN7	-	FALSE
chr14	50053348	G	A	0.00067		.	FALSE	7SLRNA	SINE,Alu
chr1	19542631	T	C	0.00031	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr2	96850885	T	C	0.00699	STARD7	-	FALSE
chr1	179326588	A	G	0.00563	SOAT1	+	TRUE	AluSg	SINE,Alu
chr5	149829071	T	C	0.00407	RPS14	-	FALSE
chr1	86119441	G	A	0.00905	ZNHIT6	-	FALSE
chr1	79125148	G	A	0.00203	IFI44	+	FALSE
chr5	56177849	C	G	0.00921	MAP3K1	+	FALSE	(CAA)n	SINE,Alu
chr1	11084103	T	A	0.00162	TARDBP	+	FALSE
chr19	2426238	T	G	0.00129	TIMM13,TMPRSS9	+,-	FALSE
chr1	90478690	A	C	0.00035	ZNF326	+	FALSE
chr2	55459824	C	T	0.00763	RPS27A	+	FALSE
chr2	128061053	A	G	0.00184	MAP3K2	-	FALSE
chr2	20401854	A	T	2.80783E-05	SDC1	-	FALSE
chr10	11912065	C	G	0.00191	PROSER2-AS1,PROSER2	+,-	FALSE
chr7	6064015	A	T	0.00746	EIF2AK1	-	FALSE
chr11	28134974	C	A	0.00479	METTL15	+	FALSE
chr12	133298121	A	G	0.00026	PGAM5	+	TRUE	AluJo	SINE,Alu
chr19	65146	G	A	0.00761	WASH5P	-	FALSE

RBP	GPKOW
Knock-Method	shRNA
RBP Family	KOW
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR968YWY
Platform	HiSeq
Pubmed ID	32252787

GPKOW - Target Gene Network